Rorug05G0224400
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000418
Physical Location & Seq
Reverse (-)
23275067 .. 23280847
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0224400.1

Sequence Viewer

Length: 1146 bp
ATGGGTAGGCCTCCAAGTAACGGAGGCCCTTCATTCCGCTTCAATCAGACTGAGGTTGCTGAGATGGAAACTATTCTGCATCAACACAATAATACAATGCCAGCACGGGAACTTCTAGTGACCCTTGCAGAGAAGTTCAGTGAAACAGCAGAGCGAAAAGGCAAATTTCAAGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAAAATAGGCGATATGCTATTAGAGCTAAATCAAGTAAGGTTCTTGGGAAGTTAAATGTGTCACCTATGATGCCTCGGGTGGATTCAACTCCAGTGAGAACTGTTCCTCAAGGCCCCCAACCTATAGCTGCTCCTATACATGCTCCTTCAGTTCCAACCTCAGCAAGGGGTGCTTCTGAAAATCCTATCTTGGAGTTTGAAGCTAAATCTGGAAGGGATGCTGCATGGTATGATGTTGCTAACTTTTTATCTCATAGACATTTGGAGGGTGGTGATCCGGACGTGCTGGTTCGGTTTGCTGGATTCGGACCAGAGGAGGATGAGTGGGTTAATGTTCGGAAGCATGTCAGGCAGCGCTCTCTTCCATGTGAGTCATCGGAGTGTGTTGCAGTTCTCCCTGGAGACCTCATACTTTGTTTTCAGGAAGGTAAAGAGCAGGCTTTGTATTTTGATGCCAATGTCCTTGATGCTCAAAGACGAAGACATGATGTAAGAGGTTGTCGTTGTAGGTTTTTAGTGCGCTATGTTCACGATCAGTCCGAGGAAATTGTTCCACTGAGGAAGGTTTGCCGTCGGCCTGAAACGGATTACAGGTTGCATCAACTTCATGCTGAAAACAACACAACAGCAGCGGAGCAGAAAAGTATGGATCATTTTAAGGTGCCTGCTACTTCTGCTGAAATGATACAAAAGCAGCCGAATGCAGATGCAGCGTTTGCGTCCCCGGTTTTTCATACTAATGCTTCTTTTGCTCCCCAAGCTTCAACTCCGGAACTTAGAAAACCCGAAATGAGCATTGTTCTTAGTGCAGGAAATACTTGTGGTCCATCAGGTAGTGCTGGAGTCACTAGTGGTAGTGCTACAGGTTGTGCTGTACTCACAAGCTGCACTGCTACAGTCCTCCCTCATGGCGGTTCTGTTGGGAACATACCGGGAGGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

381

Amino Acids

41.85

Weight (kDa)

8.35

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 131 - 257 2e-43 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 862
AccIII TCCGGA 2 cut(s) 478, 970
AciI CCGC 3 cut(s) 37, 833, 1113
AclWI GGATC 2 cut(s) 470, 858
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 1077
AfeI AGCGCT 1 cut(s) 557
AfiI CCNNNNNNNGG 3 cut(s) 20, 366, 1112
AgsI TTSAA 5 cut(s) 43, 170, 288, 401, 966
AhlI ACTAGT 1 cut(s) 1049
AjiI CACGTC 1 cut(s) 484
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 5 cut(s) 227, 329, 404, 962, 1086
AluI AGCT 5 cut(s) 227, 329, 404, 962, 1086
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 2 cut(s) 470, 858
Ama87I CYCGRG 1 cut(s) 276
Aor13HI TCCGGA 2 cut(s) 478, 970
Aor51HI AGCGCT 1 cut(s) 557
AoxI GGCC 4 cut(s) 8, 25, 313, 776
ApeKI GCWGC 7 cut(s) 329, 422, 553, 830, 895, 911, 1086
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 3 cut(s) 72, 197, 750
AspLEI GCGC 2 cut(s) 558, 723
AspS9I GGNCC 4 cut(s) 26, 314, 509, 1025
AsuC2I CCSGG 2 cut(s) 926, 1134
AsuHPI GGTGA 2 cut(s) 255, 485
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 2 cut(s) 509, 1025
BanI GGYRCC 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 688
BbvCI CCTCAGC 1 cut(s) 361
BbvI GCAGC 7 cut(s) 316, 409, 565, 842, 907, 923, 1073
BccI CCATC 2 cut(s) 58, 1036
BceAI ACGGC 1 cut(s) 756
BciT130I CCWGG 1 cut(s) 600
BcnI CCSGG 2 cut(s) 926, 1134
BcoDI GTCTC 1 cut(s) 597
BcuI ACTAGT 1 cut(s) 1049
BfaI CTAG 2 cut(s) 116, 1050
BfmI CTRYAG 3 cut(s) 324, 1062, 1095
BfoI RGCGCY 1 cut(s) 559
BisI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
BlsI GCNGC 7 cut(s) 331, 424, 555, 832, 897, 913, 1088
Bme1390I CCNGG 3 cut(s) 600, 926, 1134
Bme18I GGWCC 2 cut(s) 509, 1025
BmeT110I CYCGRG 1 cut(s) 276
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 4 cut(s) 26, 314, 509, 1025
BmiI GGNNCC 3 cut(s) 200, 316, 864
BmrFI CCNGG 3 cut(s) 600, 926, 1134
BmsI GCATC 7 cut(s) 88, 261, 409, 643, 658, 808, 898
BpiI GAAGAC 1 cut(s) 688
BpmI CTGGAG 3 cut(s) 276, 621, 1062
Bpu10I CCTNAGC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 2 cut(s) 926, 1134
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 275, 598, 741, 924
BsaWI WCCGGW 2 cut(s) 478, 970
BsaXI ACNNNNNCTCC 2 cut(s) 509, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 366, 1112
Bse1I ACTGG 1 cut(s) 293
BseAI TCCGGA 2 cut(s) 478, 970
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 4 cut(s) 275, 598, 741, 924
BseGI GGATG 2 cut(s) 424, 526
BseLI CCNNNNNNNGG 3 cut(s) 20, 366, 1112
BseMII CTCAG 4 cut(s) 42, 51, 375, 749
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 7 cut(s) 316, 409, 565, 842, 907, 923, 1073
BsgI GTGCAG 2 cut(s) 1029, 1072
BshFI GGCC 4 cut(s) 10, 27, 315, 778
BshNI GGYRCC 1 cut(s) 862
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 4 cut(s) 479, 926, 971, 1133
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 3 cut(s) 20, 366, 1112
BsmAI GTCTC 1 cut(s) 597
BsmFI GGGAC 1 cut(s) 907
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 4 cut(s) 10, 27, 315, 778
Bso31I GGTCTC 1 cut(s) 597
BsoBI CYCGRG 1 cut(s) 276
Bsp13I TCCGGA 2 cut(s) 478, 970
Bsp143I GATC 3 cut(s) 475, 733, 850
BspACI CCGC 3 cut(s) 37, 833, 1113
BspANI GGCC 4 cut(s) 10, 27, 315, 778
BspCNI CTCAG 4 cut(s) 43, 52, 374, 750
BspEI TCCGGA 2 cut(s) 478, 970
BspLI GGNNCC 3 cut(s) 200, 316, 864
BspPI GGATC 2 cut(s) 470, 858
BspT107I GGYRCC 1 cut(s) 862
BspTNI GGTCTC 1 cut(s) 597
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 4 cut(s) 275, 598, 741, 924
BssMI GATC 3 cut(s) 475, 733, 850
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 2 cut(s) 304, 1099
Bst6I CTCTTC 1 cut(s) 567
BstAPI GCANNNNNTGC 2 cut(s) 371, 917
BstC8I GCNNGC 3 cut(s) 102, 639, 867
BstDEI CTNAG 6 cut(s) 51, 60, 361, 758, 977, 1004
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 424, 526
BstH2I RGCGCY 1 cut(s) 559
BstHHI GCGC 2 cut(s) 558, 723
BstKTI GATC 3 cut(s) 478, 736, 853
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 3 cut(s) 475, 733, 850
BstMWI GCNNNNNNNGC 9 cut(s) 181, 224, 371, 550, 875, 911, 917, 950, 959
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 2 cut(s) 344, 548
BstSCI CCNGG 3 cut(s) 598, 924, 1132
BstSFI CTRYAG 3 cut(s) 324, 1062, 1095
BstV1I GCAGC 7 cut(s) 316, 409, 565, 842, 907, 923, 1073
BstV2I GAAGAC 1 cut(s) 688
BsuRI GGCC 4 cut(s) 10, 27, 315, 778
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 2 cut(s) 424, 526
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 4 cut(s) 145, 300, 755, 1089
Cac8I GCNNGC 3 cut(s) 102, 639, 867
CfoI GCGC 2 cut(s) 558, 723
Cfr13I GGNCC 4 cut(s) 26, 314, 509, 1025
CseI GACGC 1 cut(s) 909
Csp6I GTAC 1 cut(s) 1076
CviAII CATG 7 cut(s) 341, 426, 545, 567, 686, 809, 1109
CviQI GTAC 1 cut(s) 1076
DdeI CTNAG 6 cut(s) 51, 60, 361, 758, 977, 1004
DpnI GATC 3 cut(s) 477, 735, 852
DpnII GATC 3 cut(s) 475, 733, 850
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 509, 1025
Eco47III AGCGCT 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 333
Eco88I CYCGRG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoO109I RGGNCCY 2 cut(s) 26, 314
EcoRII CCWGG 1 cut(s) 598
FaeI CATG 7 cut(s) 344, 429, 548, 570, 689, 812, 1112
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FaqI GGGAC 1 cut(s) 907
FatI CATG 7 cut(s) 340, 425, 544, 566, 685, 808, 1108
Fnu4HI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
FokI GGATG 2 cut(s) 431, 533
Fsp4HI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
FspBI CTAG 2 cut(s) 116, 1050
GlaI GCGC 2 cut(s) 557, 722
GluI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
GsuI CTGGAG 3 cut(s) 276, 621, 1062
HaeII RGCGCY 1 cut(s) 559
HaeIII GGCC 4 cut(s) 10, 27, 315, 778
HapII CCGG 4 cut(s) 479, 926, 971, 1133
HgaI GACGC 1 cut(s) 909
HhaI GCGC 2 cut(s) 558, 723
Hin1II CATG 7 cut(s) 344, 429, 548, 570, 689, 812, 1112
Hin6I GCGC 2 cut(s) 556, 721
HinP1I GCGC 2 cut(s) 556, 721
HindIII AAGCTT 1 cut(s) 960
HinfI GANTC 4 cut(s) 284, 504, 572, 1044
HpaII CCGG 4 cut(s) 479, 926, 971, 1133
HphI GGTGA 2 cut(s) 255, 485
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 6 cut(s) 48, 379, 509, 540, 580, 742
Hpy188III TCNNGA 5 cut(s) 411, 479, 623, 731, 971
Hpy8I GTNNAC 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 777
HpyAV CCTTC 5 cut(s) 39, 357, 408, 620, 757
HpyCH4III ACNGT 2 cut(s) 304, 1099
HpyCH4IV ACGT 1 cut(s) 483
HpyF10VI GCNNNNNNNGC 9 cut(s) 181, 224, 371, 550, 875, 911, 917, 950, 959
HpyF3I CTNAG 6 cut(s) 51, 60, 361, 758, 977, 1004
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 7 cut(s) 344, 429, 548, 570, 689, 812, 1112
HspAI GCGC 2 cut(s) 556, 721
Kpn2I TCCGGA 2 cut(s) 478, 970
Kzo9I GATC 3 cut(s) 475, 733, 850
LmnI GCTCC 4 cut(s) 337, 349, 835, 958
Lsp1109I GCAGC 7 cut(s) 316, 409, 565, 842, 907, 923, 1073
LweI GCATC 7 cut(s) 88, 261, 409, 643, 658, 808, 898
MaeI CTAG 2 cut(s) 116, 1050
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 4 cut(s) 17, 118, 261, 1045
MalI GATC 3 cut(s) 477, 735, 852
MboI GATC 3 cut(s) 475, 733, 850
MboII GAAGA 2 cut(s) 554, 693
MluCI AATT 4 cut(s) 164, 193, 747, 1141
MlyI GAGTC 2 cut(s) 581, 1053
MmeI TCCRAC 1 cut(s) 380
MroI TCCGGA 2 cut(s) 478, 970
MroXI GAANNNNTTC 3 cut(s) 72, 197, 750
MseI TTAA 3 cut(s) 254, 531, 858
MslI CAYNNNNRTG 2 cut(s) 580, 939
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 4 cut(s) 479, 926, 971, 1133
MspR9I CCNGG 3 cut(s) 600, 926, 1134
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 9 cut(s) 181, 224, 371, 550, 875, 911, 917, 950, 959
NciI CCSGG 2 cut(s) 926, 1134
NdeII GATC 3 cut(s) 475, 733, 850
NlaIII CATG 7 cut(s) 344, 429, 548, 570, 689, 812, 1112
NlaIV GGNNCC 3 cut(s) 200, 316, 864
NmuCI GTSAC 3 cut(s) 118, 261, 1045
NspI RCATGY 2 cut(s) 344, 548
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 738
PctI GAATGC 1 cut(s) 907
PdmI GAANNNNTTC 3 cut(s) 72, 197, 750
PfeI GAWTC 2 cut(s) 284, 504
PkrI GCNGC 7 cut(s) 331, 424, 555, 832, 897, 913, 1088
PleI GAGTC 2 cut(s) 580, 1052
PpsI GAGTC 2 cut(s) 580, 1052
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 3 cut(s) 200, 316, 864
PspPI GGNCC 4 cut(s) 26, 314, 509, 1025
RsaI GTAC 1 cut(s) 1077
RsaNI GTAC 1 cut(s) 1076
RseI CAYNNNNRTG 2 cut(s) 580, 939
SaqAI TTAA 3 cut(s) 254, 531, 858
SatI GCNGC 7 cut(s) 330, 423, 554, 831, 896, 912, 1087
Sau3AI GATC 3 cut(s) 475, 733, 850
Sau96I GGNCC 4 cut(s) 26, 314, 509, 1025
SchI GAGTC 2 cut(s) 581, 1053
ScrFI CCNGG 3 cut(s) 600, 926, 1134
SfaNI GCATC 7 cut(s) 88, 261, 409, 643, 658, 808, 898
SfcI CTRYAG 3 cut(s) 324, 1062, 1095
SinI GGWCC 2 cut(s) 509, 1025
SmiMI CAYNNNNRTG 2 cut(s) 580, 939
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SpeI ACTAGT 1 cut(s) 1049
Sse9I AATT 4 cut(s) 164, 193, 747, 1141
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 3 cut(s) 37, 833, 1113
SspMI CTAG 2 cut(s) 116, 1050
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 598, 924, 1132
TaaI ACNGT 2 cut(s) 304, 1099
TaiI ACGT 1 cut(s) 486
TasI AATT 4 cut(s) 164, 193, 747, 1141
TatI WGTACW 1 cut(s) 1075
TfiI GAWTC 2 cut(s) 284, 504
Tru1I TTAA 3 cut(s) 254, 531, 858
Tru9I TTAA 3 cut(s) 254, 531, 858
TscAI CASTG 4 cut(s) 145, 300, 762, 1096
TseFI GTSAC 3 cut(s) 118, 261, 1045
TseI GCWGC 7 cut(s) 329, 422, 553, 830, 895, 911, 1086
Tsp45I GTSAC 3 cut(s) 118, 261, 1045
TspDTI ATGAA 4 cut(s) 21, 194, 797, 923
TspGWI ACGGA 2 cut(s) 36, 800
TspRI CASTG 4 cut(s) 145, 300, 762, 1096
VpaK11BI GGWCC 2 cut(s) 509, 1025
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 1 cut(s) 164
XceI RCATGY 2 cut(s) 344, 548
XmnI GAANNNNTTC 3 cut(s) 72, 197, 750
XspI CTAG 2 cut(s) 116, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.