Rorug05G0232500
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000418
Physical Location & Seq
Reverse (-)
24228234 .. 24230665
2432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0232500.1

Sequence Viewer

Length: 762 bp
ATGGAGTACACATCAAGGCCTCAGGAACAAACCCGAGATCATCATCATCATCCTCACCATCATCATCAGAAGCCGCCTGCTTCATATTCTCCTCTAAACTCCCCCACCAGCAATGGCAGCAGCAACAACAACAACTCCGGAGTTCAAACTCCGACAACTCCAAAGCTGACTCCCAGATCTGACTCCAACCCTTACGCCACCACCTTCGTCCAGGCCGACTCCTCCAACTTCAAGCACGTAGTCCAAATGCTCACCGGCTCATCGGAGACCACAACGAAGCAAACTAACAAGCACACACAGGAGTCATCGTCGTCCCCACTGTCGTCCAAGAACTTCACCATCCCTCCGGTGAAGACCGCGCCGAAGAAGCAGCAGGGCTTCAAGCTCTACGAGAGGAGGAGCCAGAACCTCAAGAACAGCCTGATGATCAATACCCTGATGCCCAATTTTGCCCACCACCGGAGCCAAGCCTCTTCTGGGTTCTCGCCGCGTCACCCGGCCGAGATCTTGTCGCCGAGTCTGCTCGACTTTCCGTCGCTGACGCTGAGCCCGGTGACCCCATTGAACGACGACCATTTTGACAAGTCGGCGTCGTCGCCGTTGGGGAACTCTTCGTCGGAGGAGGATCGGGCTATAGCCGAGAAGGGTTTTTACTTGCACCCGTCTCCGAGAACGAGCACCAGTACTCCCAGAGAGCCAGAGCCCCGGCTTTTGCCATTGTTTCCGGTCACTTCGCCGAGAGTTTCAGGGTCGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

253

Amino Acids

27.87

Weight (kDa)

9.58

Isoelectric Point (pI)

65.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 64 - 90 2.8e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 359, 490
AccIII TCCGGA 1 cut(s) 137
AciI CCGC 3 cut(s) 74, 357, 488
AclWI GGATC 1 cut(s) 633
AcoI YGGCCR 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 2 cut(s) 8, 685
AfiI CCNNNNNNNGG 2 cut(s) 459, 477
AgsI TTSAA 4 cut(s) 146, 232, 382, 565
AhdI GACNNNNNGTC 1 cut(s) 532
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 166, 385
AluI AGCT 2 cut(s) 166, 385
Alw21I GWGCWC 1 cut(s) 680
Alw26I GTCTC 2 cut(s) 260, 669
AlwI GGATC 1 cut(s) 633
Ama87I CYCGRG 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 137
AoxI GGCC 3 cut(s) 17, 213, 498
ApeKI GCWGC 3 cut(s) 117, 120, 370
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AspLEI GCGC 1 cut(s) 361
AsuC2I CCSGG 3 cut(s) 497, 551, 706
AsuHPI GGTGA 6 cut(s) 47, 244, 328, 361, 485, 565
AvaI CYCGRG 1 cut(s) 33
AxyI CCTNAGG 1 cut(s) 21
BanII GRGCYC 2 cut(s) 551, 705
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
BbsI GAAGAC 2 cut(s) 359, 747
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 3 cut(s) 129, 132, 382
BccI CCATC 2 cut(s) 66, 347
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 1 cut(s) 426
BcnI CCSGG 3 cut(s) 497, 551, 706
BcoDI GTCTC 2 cut(s) 260, 669
BfmI CTRYAG 1 cut(s) 633
BglII AGATCT 2 cut(s) 176, 504
BisI GCNGC 5 cut(s) 74, 118, 121, 371, 488
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 5 cut(s) 75, 119, 122, 372, 489
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 4 cut(s) 212, 497, 551, 706
BmeRI GACNNNNNGTC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 401, 464
BmrFI CCNGG 4 cut(s) 212, 497, 551, 706
BmsI GCATC 1 cut(s) 429
BpiI GAAGAC 2 cut(s) 359, 747
Bpu1102I GCTNAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 3 cut(s) 497, 551, 706
BsaAI YACGTR 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 42
BsaHI GRCGYC 1 cut(s) 590
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 704
BsaWI WCCGGW 4 cut(s) 137, 346, 459, 724
BsaXI ACNNNNNCTCC 8 cut(s) 119, 149, 293, 323, 328, 358, 670, 700
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 477
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 681
Bse21I CCTNAGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 137
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 704
BseGI GGATG 2 cut(s) 49, 339
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 459, 477
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 35, 536
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 5 cut(s) 81, 211, 409, 412, 635
BseX3I CGGCCG 1 cut(s) 498
BseXI GCAGC 3 cut(s) 129, 132, 382
Bsh1236I CGCG 2 cut(s) 359, 490
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 3 cut(s) 19, 215, 500
BsiEI CGRYCG 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 680
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 8 cut(s) 138, 255, 347, 460, 497, 551, 706, 725
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 459, 477
BsmAI GTCTC 2 cut(s) 260, 669
BsmBI CGTCTC 1 cut(s) 669
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 3 cut(s) 19, 215, 500
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 551, 680, 705
Bsp13I TCCGGA 1 cut(s) 137
Bsp143I GATC 5 cut(s) 37, 176, 426, 504, 625
Bsp1720I GCTNAGC 1 cut(s) 545
BspACI CCGC 3 cut(s) 74, 357, 488
BspANI GGCC 3 cut(s) 19, 215, 500
BspCNI CTCAG 2 cut(s) 34, 537
BspEI TCCGGA 1 cut(s) 137
BspFNI CGCG 2 cut(s) 359, 490
BspLI GGNNCC 2 cut(s) 401, 464
BspPI GGATC 1 cut(s) 633
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 704
BssMI GATC 5 cut(s) 37, 176, 426, 504, 625
BssNI GRCGYC 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 2 cut(s) 478, 616
BstACI GRCGYC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 21, 545
BstEII GGTNACC 1 cut(s) 553
BstF5I GGATG 2 cut(s) 49, 339
BstFNI CGCG 2 cut(s) 359, 490
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 5 cut(s) 40, 179, 429, 507, 628
BstMAI GTCTC 2 cut(s) 260, 669
BstMBI GATC 5 cut(s) 37, 176, 426, 504, 625
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 3 cut(s) 117, 367, 520
BstNI CCWGG 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 553
BstSCI CCNGG 4 cut(s) 210, 495, 549, 704
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 2 cut(s) 359, 490
BstV1I GCAGC 3 cut(s) 129, 132, 382
BstV2I GAAGAC 2 cut(s) 359, 747
BstX2I RGATCY 2 cut(s) 176, 504
BstYI RGATCY 2 cut(s) 176, 504
BstZI CGGCCG 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 3 cut(s) 19, 215, 500
BtsCI GGATG 2 cut(s) 49, 339
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 78
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 254
CseI GACGC 3 cut(s) 479, 550, 579
Csp6I GTAC 2 cut(s) 7, 684
CviQI GTAC 2 cut(s) 7, 684
DdeI CTNAG 2 cut(s) 21, 545
DpnI GATC 5 cut(s) 39, 178, 428, 506, 627
DpnII GATC 5 cut(s) 37, 176, 426, 504, 625
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 498
EagI CGGCCG 1 cut(s) 498
Eam1104I CTCTTC 2 cut(s) 478, 616
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 2 cut(s) 478, 616
EclXI CGGCCG 1 cut(s) 498
Eco147I AGGCCT 1 cut(s) 19
Eco24I GRGCYC 2 cut(s) 551, 705
Eco31I GGTCTC 1 cut(s) 260
Eco52I CGGCCG 1 cut(s) 498
Eco81I CCTNAGG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 553
EcoO65I GGTNACC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 210
EcoT38I GRGCYC 2 cut(s) 551, 705
Esp3I CGTCTC 1 cut(s) 669
FaiI YATR 2 cut(s) 85, 635
FaqI GGGAC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 5 cut(s) 74, 118, 121, 371, 488
FokI GGATG 2 cut(s) 36, 326
FriOI GRGCYC 2 cut(s) 551, 705
Fsp4HI GCNGC 5 cut(s) 74, 118, 121, 371, 488
GlaI GCGC 1 cut(s) 360
GluI GCNGC 5 cut(s) 74, 118, 121, 371, 488
HaeIII GGCC 3 cut(s) 19, 215, 500
HapII CCGG 8 cut(s) 138, 255, 347, 460, 497, 551, 706, 725
HgaI GACGC 3 cut(s) 479, 550, 579
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 590
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HinfI GANTC 5 cut(s) 169, 182, 218, 302, 517
HpaII CCGG 8 cut(s) 138, 255, 347, 460, 497, 551, 706, 725
HphI GGTGA 6 cut(s) 47, 244, 328, 361, 485, 565
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 6 cut(s) 69, 153, 181, 265, 619, 669
Hpy188III TCNNGA 4 cut(s) 23, 138, 412, 759
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 6 cut(s) 313, 538, 572, 595, 598, 619
HpyAV CCTTC 2 cut(s) 214, 637
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 1 cut(s) 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 367, 520
HpyF3I CTNAG 2 cut(s) 21, 545
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 590
HspAI GCGC 1 cut(s) 359
Kpn2I TCCGGA 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 5 cut(s) 37, 176, 426, 504, 625
LmnI GCTCC 2 cut(s) 399, 462
Lsp1109I GCAGC 3 cut(s) 129, 132, 382
LweI GCATC 1 cut(s) 429
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 491, 553, 727
MalI GATC 5 cut(s) 39, 178, 428, 506, 627
MboI GATC 5 cut(s) 37, 176, 426, 504, 625
MboII GAAGA 5 cut(s) 364, 376, 465, 603, 747
MflI RGATCY 2 cut(s) 176, 504
MhlI GDGCHC 3 cut(s) 551, 680, 705
MluCI AATT 1 cut(s) 445
MlyI GAGTC 5 cut(s) 163, 176, 212, 311, 526
MmeI TCCRAC 4 cut(s) 176, 210, 249, 597
MroI TCCGGA 1 cut(s) 137
MspI CCGG 8 cut(s) 138, 255, 347, 460, 497, 551, 706, 725
MspR9I CCNGG 4 cut(s) 212, 497, 551, 706
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 2 cut(s) 359, 490
MwoI GCNNNNNNNGC 3 cut(s) 117, 367, 520
NciI CCSGG 3 cut(s) 497, 551, 706
NdeII GATC 5 cut(s) 37, 176, 426, 504, 625
NlaIV GGNNCC 2 cut(s) 401, 464
NmeAIII GCCGAG 4 cut(s) 526, 540, 664, 762
NmuCI GTSAC 3 cut(s) 491, 553, 727
PceI AGGCCT 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PkrI GCNGC 5 cut(s) 75, 119, 122, 372, 489
PleI GAGTC 5 cut(s) 163, 176, 212, 310, 525
PpsI GAGTC 5 cut(s) 163, 176, 212, 310, 525
Ppu21I YACGTR 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 401, 464
PsuI RGATCY 2 cut(s) 176, 504
RsaI GTAC 2 cut(s) 8, 685
RsaNI GTAC 2 cut(s) 7, 684
SatI GCNGC 5 cut(s) 74, 118, 121, 371, 488
Sau3AI GATC 5 cut(s) 37, 176, 426, 504, 625
ScaI AGTACT 1 cut(s) 685
SchI GAGTC 5 cut(s) 163, 176, 212, 311, 526
ScrFI CCNGG 4 cut(s) 212, 497, 551, 706
SduI GDGCHC 3 cut(s) 551, 680, 705
SetI ASST 5 cut(s) 168, 206, 240, 387, 411
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 1 cut(s) 445
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 3 cut(s) 74, 357, 488
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 4 cut(s) 210, 495, 549, 704
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 525
TasI AATT 1 cut(s) 445
TatI WGTACW 2 cut(s) 6, 683
TauI GCSGC 2 cut(s) 76, 490
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 3 cut(s) 491, 553, 727
TseI GCWGC 3 cut(s) 117, 120, 370
Tsp45I GTSAC 3 cut(s) 491, 553, 727
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 1 cut(s) 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.