Rmu_sc0006413.1_g000020
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006413.1
OG0000418
Physical Location & Seq
Forward (+)
152355 .. 153293
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006413.1_g000020.1.cds

Sequence Viewer

Length: 939 bp
atgggttgtccgatcgggatcgggtacaggtttcatcccacagatgaagaacttgtgggttactttcttcagcaaagggccaggatgggcaatcagttccactcgaatgaggtctccgagtactcgaagttttacggccaagaagaaccctgggttgtttgggacaagaacggtggttccagagtggatgatggagagcctctctttttcttcaccaaacgcaagaagttgaaccccaatggcaagcggtttgatcgtaaagtaggctcgggaacgtggagcgggcagttttcgagagagattgtggccgtggatagagacaccggatgtcgtattactgggatgaggagggaatttaggtacgagggtgggtgtgatcctgaacaaaacaattcttggttgatgcatgaatacgagttgtgtgccagtgataccttggtgttgtgcaccttgaagaagaatccaagaaaagctagtagtgctcagaagaggaagaggattgttgataatcaaccgagaaaaaccaaggcagtgagatcggaaaaggctgagacttgtgaggatgtcgatcttacagatctggaacagaccaattccgagagtcgagatcatcagttgttgcaagttgttgatgaagattatctctatcctgagttatatcctgataatgggcctctgttttctctggaggaacttcttgcaccaagtcctctaaatgttccggatcctcttccacacttggagtcgaatgagtctcagtctcagtctcaggatcaatcatatgtgagcactaatgatcaatttcaggatcattcatatgaagacaatagcttcatgagtttcctatccgctgaatttcaacaacagttaggcgaagacaacaactacagctttgtatgcagtgatcaatccttggactgcaacgacttaacatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

312

Amino Acids

35.99

Weight (kDa)

4.75

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 721
AciI CCGC 3 cut(s) 247, 282, 849
AclWI GGATC 6 cut(s) 26, 371, 719, 732, 780, 816
AcoI YGGCCR 2 cut(s) 136, 306
AcsI RAATTY 2 cut(s) 353, 854
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 3 cut(s) 26, 122, 362
AfiI CCNNNNNNNGG 1 cut(s) 668
AgsI TTSAA 3 cut(s) 232, 454, 860
AjnI CCWGG 2 cut(s) 80, 149
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 3 cut(s) 473, 831, 891
AluI AGCT 3 cut(s) 473, 831, 891
Alw21I GWGCWC 3 cut(s) 449, 484, 791
Alw26I GTCTC 6 cut(s) 118, 312, 545, 759, 765, 771
Alw44I GTGCAC 1 cut(s) 445
AlwI GGATC 6 cut(s) 26, 371, 719, 732, 780, 816
Ama87I CYCGRG 1 cut(s) 268
Aor13HI TCCGGA 1 cut(s) 721
AoxI GGCC 4 cut(s) 78, 136, 306, 671
ApaLI GTGCAC 1 cut(s) 445
ApoI RAATTY 2 cut(s) 353, 854
AspS9I GGNCC 2 cut(s) 78, 671
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 449
BaeI ACNNNNGTAYC 4 cut(s) 352, 385, 423, 456
BamHI GGATCC 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 828, 882
Bbv12I GWGCWC 3 cut(s) 449, 484, 791
BccI CCATC 2 cut(s) 79, 185
BceAI ACGGC 2 cut(s) 151, 293
BcgI CGANNNNNNTGC 4 cut(s) 404, 438, 519, 553
BciT130I CCWGG 2 cut(s) 82, 151
BclI TGATCA 2 cut(s) 796, 904
BcoDI GTCTC 6 cut(s) 118, 312, 545, 759, 765, 771
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 886
BglII AGATCT 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 82, 151
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 78, 671
BmiI GGNNCC 2 cut(s) 178, 726
BmrFI CCNGG 2 cut(s) 82, 151
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 828, 882
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 707
BsaBI GATNNNNATC 2 cut(s) 17, 567
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 6 cut(s) 149, 150, 309, 435, 525, 912
BsaWI WCCGGW 2 cut(s) 323, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse1I ACTGG 2 cut(s) 343, 426
Bse8I GATNNNNATC 2 cut(s) 17, 567
BseAI TCCGGA 1 cut(s) 721
BseBI CCWGG 2 cut(s) 82, 151
BseDI CCNNGG 6 cut(s) 149, 150, 309, 435, 525, 912
BseGI GGATG 6 cut(s) 34, 90, 193, 332, 348, 568
BseJI GATNNNNATC 2 cut(s) 17, 567
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMII CTCAG 6 cut(s) 497, 540, 642, 770, 776, 782
BseNI ACTGG 2 cut(s) 343, 426
BseRI GAGGAG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 80, 138, 308, 673
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 3 cut(s) 449, 484, 791
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 324, 722
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 6 cut(s) 118, 312, 545, 759, 765, 771
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 4 cut(s) 80, 138, 308, 673
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 449, 484, 791
Bsp13I TCCGGA 1 cut(s) 721
BspACI CCGC 3 cut(s) 247, 282, 849
BspANI GGCC 4 cut(s) 80, 138, 308, 673
BspCNI CTCAG 6 cut(s) 496, 541, 643, 769, 775, 781
BspEI TCCGGA 1 cut(s) 721
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 2 cut(s) 178, 726
BspPI GGATC 6 cut(s) 26, 371, 719, 732, 780, 816
BspTNI GGTCTC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 282
BsrI ACTGG 2 cut(s) 343, 426
BssECI CCNNGG 6 cut(s) 149, 150, 309, 435, 525, 912
BssT1I CCWWGG 3 cut(s) 435, 525, 912
Bst2UI CCWGG 2 cut(s) 82, 151
Bst4CI ACNGT 2 cut(s) 173, 867
Bst6I CTCTTC 3 cut(s) 482, 488, 735
BstC8I GCNNGC 2 cut(s) 245, 284
BstDEI CTNAG 6 cut(s) 483, 549, 651, 756, 762, 768
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 6 cut(s) 34, 90, 193, 332, 348, 568
BstMAI GTCTC 6 cut(s) 118, 312, 545, 759, 765, 771
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 479, 897
BstNI CCWGG 2 cut(s) 82, 151
BstSCI CCNGG 2 cut(s) 80, 149
BstSFI CTRYAG 1 cut(s) 886
BstSLI GKGCMC 1 cut(s) 449
BstV2I GAAGAC 2 cut(s) 828, 882
BstX2I RGATCY 2 cut(s) 577, 724
BstYI RGATCY 2 cut(s) 577, 724
BsuRI GGCC 4 cut(s) 80, 138, 308, 673
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 6 cut(s) 34, 90, 193, 332, 348, 568
BtsI GCAGTG 2 cut(s) 537, 907
BtsIMutI CAGTG 3 cut(s) 433, 537, 907
Cac8I GCNNGC 2 cut(s) 245, 284
CciI TCATGA 1 cut(s) 834
Cfr13I GGNCC 2 cut(s) 78, 671
Csp6I GTAC 3 cut(s) 25, 121, 361
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 3 cut(s) 407, 835, 933
CviQI GTAC 3 cut(s) 25, 121, 361
DdeI CTNAG 6 cut(s) 483, 549, 651, 756, 762, 768
EaeI YGGCCR 2 cut(s) 136, 306
Eam1104I CTCTTC 3 cut(s) 482, 488, 735
EarI CTCTTC 3 cut(s) 482, 488, 735
Eco130I CCWWGG 3 cut(s) 435, 525, 912
Eco31I GGTCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 80, 149
EcoT14I CCWWGG 3 cut(s) 435, 525, 912
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 3 cut(s) 435, 525, 912
FaeI CATG 3 cut(s) 410, 838, 936
FaiI YATR 9 cut(s) 408, 658, 781, 783, 817, 819, 836, 898, 934
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 406, 834, 932
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 2 cut(s) 781, 817
FbaI TGATCA 2 cut(s) 796, 904
FokI GGATG 6 cut(s) 21, 97, 200, 339, 355, 575
FspBI CTAG 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 707
HaeIII GGCC 4 cut(s) 80, 138, 308, 673
HapII CCGG 2 cut(s) 324, 722
Hin1II CATG 3 cut(s) 410, 838, 936
HinfI GANTC 4 cut(s) 460, 601, 743, 752
HpaII CCGG 2 cut(s) 324, 722
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 5 cut(s) 12, 118, 486, 541, 598
Hpy8I GTNNAC 1 cut(s) 447
HpyCH4III ACNGT 2 cut(s) 173, 867
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 6 cut(s) 406, 447, 622, 701, 900, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 897
HpyF3I CTNAG 6 cut(s) 483, 549, 651, 756, 762, 768
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 3 cut(s) 410, 838, 936
Kpn2I TCCGGA 1 cut(s) 721
Ksp22I TGATCA 2 cut(s) 796, 904
LmnI GCTCC 1 cut(s) 279
LweI GCATC 1 cut(s) 393
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 59
MbiI CCGCTC 1 cut(s) 282
MflI RGATCY 2 cut(s) 577, 724
MhlI GDGCHC 3 cut(s) 449, 484, 791
MluCI AATT 5 cut(s) 353, 391, 592, 800, 854
MlyI GAGTC 3 cut(s) 610, 752, 761
Mph1103I ATGCAT 1 cut(s) 408
MroI TCCGGA 1 cut(s) 721
MseI TTAA 1 cut(s) 929
MslI CAYNNNNRTG 2 cut(s) 105, 816
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 2 cut(s) 324, 722
MspR9I CCNGG 2 cut(s) 82, 151
MvaI CCWGG 2 cut(s) 82, 151
MwoI GCNNNNNNNGC 2 cut(s) 479, 897
NdeI CATATG 2 cut(s) 781, 817
NlaIII CATG 3 cut(s) 410, 838, 936
NlaIV GGNNCC 2 cut(s) 178, 726
NsiI ATGCAT 1 cut(s) 408
PagI TCATGA 1 cut(s) 834
PasI CCCWGGG 1 cut(s) 150
PfeI GAWTC 1 cut(s) 460
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 3 cut(s) 609, 751, 760
PpsI GAGTC 3 cut(s) 609, 751, 760
Psp6I CCWGG 2 cut(s) 80, 149
PspGI CCWGG 2 cut(s) 80, 149
PspN4I GGNNCC 2 cut(s) 178, 726
PspPI GGNCC 2 cut(s) 78, 671
PsuI RGATCY 2 cut(s) 577, 724
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 3 cut(s) 26, 122, 362
RsaNI GTAC 3 cut(s) 25, 121, 361
RseI CAYNNNNRTG 2 cut(s) 105, 816
SaqAI TTAA 1 cut(s) 929
Sau96I GGNCC 2 cut(s) 78, 671
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 3 cut(s) 610, 752, 761
ScrFI CCNGG 2 cut(s) 82, 151
SduI GDGCHC 3 cut(s) 449, 484, 791
SetI ASST 9 cut(s) 32, 114, 278, 362, 437, 452, 475, 833, 893
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 886
SmiMI CAYNNNNRTG 2 cut(s) 105, 816
Sse9I AATT 5 cut(s) 353, 391, 592, 800, 854
SsiI CCGC 3 cut(s) 247, 282, 849
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 80, 149
StyI CCWWGG 3 cut(s) 435, 525, 912
TaaI ACNGT 2 cut(s) 173, 867
TaiI ACGT 1 cut(s) 278
TaqI TCGA 6 cut(s) 104, 125, 293, 567, 604, 746
TasI AATT 5 cut(s) 353, 391, 592, 800, 854
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 1 cut(s) 929
Tru9I TTAA 1 cut(s) 929
TscAI CASTG 3 cut(s) 433, 537, 907
TspDTI ATGAA 7 cut(s) 23, 60, 423, 648, 804, 823, 834
TspRI CASTG 3 cut(s) 433, 537, 907
VneI GTGCAC 1 cut(s) 445
XapI RAATTY 2 cut(s) 353, 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 1 cut(s) 474
ZrmI AGTACT 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.