Rmu_sc0000026.1_g000016

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000026.1
OG0000418
Physical Location & Seq
Reverse (-)
82190 .. 83141
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000026.1_g000016.1.cds

Sequence Viewer

Length: 537 bp
atgttccatgcccaatccatcagtattatgaaggaggaggaggagcaacctctatatttcttcactcaccgcaagaaattgaatcccaaagcgaaaaaatttgataggaaagtgggatcgggaacatggagtgcccagtattcaaaaaatgttgttgctgctgatgatagtgttgttggaattaagagagaatttcggtatgagggtggatctgatccacatcaaaatggggcttggttgatgcaggagtaccagatcacatctcacagtaatgatctcgttcagaaggagggaagtaatgatgatctcgtggcatcagctgatcaaccgttatttactactaatgataagcttcaaacagttcaggttgacgaaactaatatttccattgctgattgtccgaatgatacttcatattcctattttgatcttgaagttgaggaattctttggcttgactactgatgatatatatgatgatgatgactgtcagttttcgagttctgaaatacaggcattcttagcttgtctagactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

178

Amino Acids

20.22

Weight (kDa)

4.37

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AclWI GGATC 3 cut(s) 124, 209, 217
AcsI RAATTY 3 cut(s) 98, 191, 443
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 4 cut(s) 82, 144, 356, 434
AluBI AGCT 3 cut(s) 320, 352, 524
AluI AGCT 3 cut(s) 320, 352, 524
AlwI GGATC 3 cut(s) 124, 209, 217
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 3 cut(s) 98, 191, 443
AsuHPI GGTGA 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 136
BauI CACGAG 1 cut(s) 308
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 26
BclI TGATCA 1 cut(s) 322
BfaI CTAG 1 cut(s) 530
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 231, 323
BmuI ACTGGG 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 387
Bse8I GATNNNNATC 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 219
BseMI GCAATG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 3 cut(s) 50, 53, 56
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
BspACI CCGC 1 cut(s) 70
BspPI GGATC 3 cut(s) 124, 209, 217
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 136
BssMI GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst4CI ACNGT 4 cut(s) 269, 330, 361, 488
BstDEI CTNAG 1 cut(s) 520
BstKTI GATC 8 cut(s) 119, 212, 217, 258, 277, 307, 325, 430
BstMBI GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstSLI GKGCMC 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Csp6I GTAC 1 cut(s) 250
CviAII CATG 2 cut(s) 8, 126
CviJI RGCY 5 cut(s) 233, 320, 352, 453, 524
CviKI_1 RGCY 5 cut(s) 233, 320, 352, 453, 524
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 520
DpnI GATC 8 cut(s) 118, 211, 216, 257, 276, 306, 324, 429
DpnII GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
EcoRI GAATTC 1 cut(s) 443
FaeI CATG 2 cut(s) 11, 129
FaiI YATR 9 cut(s) 9, 29, 55, 127, 201, 415, 470, 472, 474
FatI CATG 2 cut(s) 7, 125
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 530
GluI GCNGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 11, 129
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 1 cut(s) 82
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 4 cut(s) 214, 285, 402, 505
Hpy188III TCNNGA 3 cut(s) 120, 431, 530
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 2 cut(s) 25, 280
HpyCH4III ACNGT 4 cut(s) 269, 330, 361, 488
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 1 cut(s) 520
Hsp92II CATG 2 cut(s) 11, 129
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 5 cut(s) 149, 230, 266, 350, 497
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 2 cut(s) 231, 323
MaeI CTAG 1 cut(s) 530
MalI GATC 8 cut(s) 118, 211, 216, 257, 276, 306, 324, 429
MboI GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 5 cut(s) 77, 98, 180, 191, 443
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 7 cut(s) 28, 31, 34, 60, 196, 283, 433
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 225, 270
MspA1I CMGCKG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 515
MwoI GCNNNNNNNGC 1 cut(s) 521
NdeII GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
NlaIII CATG 2 cut(s) 11, 129
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 160
PsuI RGATCY 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 225, 270
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 8 cut(s) 116, 209, 214, 255, 274, 304, 322, 427
SduI GDGCHC 1 cut(s) 136
SetI ASST 5 cut(s) 52, 322, 354, 369, 526
SfaNI GCATC 2 cut(s) 231, 323
SmiMI CAYNNNNRTG 2 cut(s) 225, 270
Sse9I AATT 5 cut(s) 77, 98, 180, 191, 443
SsiI CCGC 1 cut(s) 70
SspI AATATT 1 cut(s) 382
SspMI CTAG 1 cut(s) 530
TaaI ACNGT 4 cut(s) 269, 330, 361, 488
TaqI TCGA 1 cut(s) 497
TasI AATT 5 cut(s) 77, 98, 180, 191, 443
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 44, 402
XapI RAATTY 3 cut(s) 98, 191, 443
XbaI TCTAGA 1 cut(s) 529
XspI CTAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.