Rw5G030310
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000418
Physical Location & Seq
Reverse (-)
47983232 .. 47984014
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030310.1

Sequence Viewer

Length: 783 bp
ATGGCAATTCTCTCCAACAAACTCCCAGTCGGGGTCAGGTTCCTTCCCACTGACCAGGAACTGCTCGATTACTATCTCCGCACAAGGATCGCCATGGGTGACCAGTTTCGCACCGATTTCGTCGCCGATTGTCCTCATTTCTACGGAGACAAGGAGCCCTGGGTTGTCTGGCAGATCTACGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAACACTCTCTATTTCTTCACGCATCGGAGAAGGCTGAGTCCCACCGCCAAGAGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGTGCTCAGTATTCGAGAGAAGTTGAGGATGATGGTGTTGTTGTTGGACTCAAGCGGGAGTTTCGATACGAGGGCGGTTGTGACGAGAGTCACAACGCCGCTTGGTTGATGCAAGAGTTTCAGCTTGATGATGATTCTGATTTGGTATTGTGCTCGCTGAGAAAGAACCCTAGAAAGGCTCAGGGGAGCAATACCAGAGTAGTTAATGATAAAAAGAGACGGAGCATCGGGGATCAACCCACAAAGCCAAAATCTAAAAGGCAGAAAAAGGAAGGGACTTGTCATCAGGAACAAGGCAGCAGTACTGTTCATCCCAATTACGAGTTGCCCAATCCACAAATGGATGATCTAGATTTTTATATTCCTGAGATTTATCCAGTTGATGATGAGCGTGATTTATTTACTATGGATCAATTGCTTGGACAAACCCCAGTTTGGGAGGAGGGCAACAACTTCAATTTGGTTACAGGAGTACCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

260

Amino Acids

30.05

Weight (kDa)

5.37

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 141 4.7e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 79, 183, 186, 258, 352, 372, 396
AclWI GGATC 3 cut(s) 95, 537, 714
AfaI GTAC 2 cut(s) 601, 771
AfiI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 732, 733
AgsI TTSAA 1 cut(s) 754
AjnI CCWGG 2 cut(s) 54, 158
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 2 cut(s) 304, 452
Alw26I GTCTC 2 cut(s) 141, 508
AlwI GGATC 3 cut(s) 95, 537, 714
AlwNI CAGNNNCTG 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 594
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AsuHPI GGTGA 2 cut(s) 110, 200
BaeI ACNNNNGTAYC 1 cut(s) 753
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 304, 452
BbvI GCAGC 1 cut(s) 606
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 4 cut(s) 70, 100, 104, 134
BciT130I CCWGG 2 cut(s) 56, 160
BcoDI GTCTC 2 cut(s) 141, 508
BfaI CTAG 2 cut(s) 468, 647
BglII AGATCT 1 cut(s) 174
BisI GCNGC 3 cut(s) 184, 396, 595
BlsI GCNGC 3 cut(s) 185, 397, 596
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 2 cut(s) 56, 160
BmiI GGNNCC 3 cut(s) 41, 156, 286
BmrFI CCNGG 2 cut(s) 56, 160
BmrI ACTGGG 2 cut(s) 20, 722
BmsI GCATC 3 cut(s) 244, 396, 531
BmuI ACTGGG 2 cut(s) 20, 722
BoxI GACNNNNGTC 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 93, 158, 159
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 294, 472, 732, 733
Bse1I ACTGG 4 cut(s) 26, 103, 674, 728
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 56, 160
BseDI CCNNGG 3 cut(s) 93, 158, 159
BseGI GGATG 4 cut(s) 214, 331, 607, 646
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 732, 733
BseMII CTCAG 5 cut(s) 239, 317, 446, 491, 654
BseNI ACTGG 4 cut(s) 26, 103, 674, 728
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 1 cut(s) 606
BsiHKAI GWGCWC 2 cut(s) 304, 452
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 237, 586
BslI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 732, 733
BsmAI GTCTC 2 cut(s) 141, 508
BsmBI CGTCTC 1 cut(s) 508
BsmFI GGGAC 2 cut(s) 237, 586
Bsp1286I GDGCHC 3 cut(s) 159, 304, 452
Bsp143I GATC 6 cut(s) 87, 174, 271, 529, 643, 706
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 7 cut(s) 79, 183, 186, 258, 352, 372, 396
BspCNI CTCAG 5 cut(s) 240, 316, 447, 490, 655
BspLI GGNNCC 3 cut(s) 41, 156, 286
BspPI GGATC 3 cut(s) 95, 537, 714
BsrI ACTGG 4 cut(s) 26, 103, 674, 728
BssECI CCNNGG 3 cut(s) 93, 158, 159
BssMI GATC 6 cut(s) 87, 174, 271, 529, 643, 706
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 56, 160
Bst4CI ACNGT 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 5 cut(s) 248, 303, 455, 477, 663
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 4 cut(s) 214, 331, 607, 646
BstKTI GATC 6 cut(s) 90, 177, 274, 532, 646, 709
BstMAI GTCTC 2 cut(s) 141, 508
BstMBI GATC 6 cut(s) 87, 174, 271, 529, 643, 706
BstNI CCWGG 2 cut(s) 56, 160
BstPAI GACNNNNGTC 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 54, 158
BstV1I GCAGC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 4 cut(s) 214, 331, 607, 646
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 452
CaiI CAGNNNCTG 1 cut(s) 61
Csp6I GTAC 2 cut(s) 600, 770
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 157, 247, 421, 476, 544
CviKI_1 RGCY 5 cut(s) 157, 247, 421, 476, 544
CviQI GTAC 2 cut(s) 600, 770
DdeI CTNAG 5 cut(s) 248, 303, 455, 477, 663
DpnI GATC 6 cut(s) 89, 176, 273, 531, 645, 708
DpnII GATC 6 cut(s) 87, 174, 271, 529, 643, 706
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 54, 158
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 508
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 657, 704
FaqI GGGAC 2 cut(s) 237, 586
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 184, 396, 595
FokI GGATG 4 cut(s) 221, 338, 594, 653
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 3 cut(s) 184, 396, 595
FspBI CTAG 2 cut(s) 468, 647
GluI GCNGC 3 cut(s) 184, 396, 595
HapII CCGG 1 cut(s) 288
Hin1II CATG 1 cut(s) 97
HinfI GANTC 5 cut(s) 191, 250, 345, 385, 431
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 110, 200
Hpy188I TCNGA 3 cut(s) 240, 276, 436
Hpy188III TCNNGA 4 cut(s) 312, 584, 647, 662
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 53, 237, 563
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 5 cut(s) 248, 303, 455, 477, 663
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 6 cut(s) 87, 174, 271, 529, 643, 706
LmnI GCTCC 3 cut(s) 154, 483, 519
Lsp1109I GCAGC 1 cut(s) 606
LweI GCATC 3 cut(s) 244, 396, 531
MaeI CTAG 2 cut(s) 468, 647
MaeIII GTNAC 4 cut(s) 98, 377, 386, 760
MalI GATC 6 cut(s) 89, 176, 273, 531, 645, 708
MboI GATC 6 cut(s) 87, 174, 271, 529, 643, 706
MboII GAAGA 1 cut(s) 220
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 3 cut(s) 159, 304, 452
MluCI AATT 4 cut(s) 6, 613, 710, 754
MlyI GAGTC 4 cut(s) 200, 259, 339, 394
MmeI TCCRAC 2 cut(s) 39, 322
MnlI CCTC 6 cut(s) 144, 199, 316, 361, 730, 733
MseI TTAA 1 cut(s) 501
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 56, 160
MunI CAATTG 1 cut(s) 710
MvaI CCWGG 2 cut(s) 56, 160
NcoI CCATGG 1 cut(s) 93
NdeII GATC 6 cut(s) 87, 174, 271, 529, 643, 706
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 41, 156, 286
NmuCI GTSAC 3 cut(s) 98, 377, 386
PasI CCCWGGG 1 cut(s) 159
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 3 cut(s) 185, 397, 596
PleI GAGTC 4 cut(s) 199, 258, 339, 393
PpsI GAGTC 4 cut(s) 199, 258, 339, 393
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 54, 158
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 54, 158
PspN4I GGNNCC 3 cut(s) 41, 156, 286
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 2 cut(s) 601, 771
RsaNI GTAC 2 cut(s) 600, 770
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 3 cut(s) 184, 396, 595
Sau3AI GATC 6 cut(s) 87, 174, 271, 529, 643, 706
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 4 cut(s) 200, 259, 339, 394
ScrFI CCNGG 2 cut(s) 56, 160
SduI GDGCHC 3 cut(s) 159, 304, 452
SetI ASST 2 cut(s) 41, 423
SfaNI GCATC 3 cut(s) 244, 396, 531
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 4 cut(s) 6, 613, 710, 754
SsiI CCGC 7 cut(s) 79, 183, 186, 258, 352, 372, 396
SspMI CTAG 2 cut(s) 468, 647
StyD4I CCNGG 2 cut(s) 54, 158
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 3 cut(s) 66, 311, 361
TasI AATT 4 cut(s) 6, 613, 710, 754
TatI WGTACW 1 cut(s) 599
TauI GCSGC 2 cut(s) 186, 398
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 3 cut(s) 98, 377, 386
TseI GCWGC 1 cut(s) 594
Tsp45I GTSAC 3 cut(s) 98, 377, 386
TspDTI ATGAA 2 cut(s) 225, 596
TspGWI ACGGA 2 cut(s) 159, 532
TspRI CASTG 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XspI CTAG 2 cut(s) 468, 647
ZrmI AGTACT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.