Rorug03G0000900
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000418
Physical Location & Seq
Reverse (-)
148652 .. 149613
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0000900.1

Sequence Viewer

Length: 849 bp
ATGCGGCAATGCCAATCACATCGAATCCAGTATGGGTCTAAATCCTTGGCCGTAGTTGCTTTGGTTAGCTCCACTCTGGGTTATGTGTTGCTGCTTGATAAGCTAGGGCTGTGTCGTGGGACAATGGCTAGGGTTACGATTCGTCACGCGGTTACTTCTCCTATCAAGAAGGCTTATTTGCTCTTGACATACGAGTTCACCTCCGACGCATCTACGACGGTCCGATTCACGAATGGGTTTCTGAGGCGCCAACTGGGCAGGCTGCTTCGACGGGGTTATCCAGGCCGGTGGTGCAAGCTCAAGCTCTACATATGTTCACCGTACCTCCATCCTGAGATCCTTCACATTTTCAATCCCTGGCGTGTCCTGGTAGAGGTGTTGGATGCGCAGTTTGCTCAGTTTCAATGGGCCATTGTGCCTTCTCCTAAGGCTGTAGCGCTAGCTCCTATGGTTACTCTGGTGTCCCCAGTTCCTATTACAGGCAAGAAGAGGGCAACATGCGTCAATGGTGTTGGCCCTTACACAAAGCGGACGAAGTTGGAATCAAAACCGGTCTCCTCCCTAGTGAAGCTTGGTATCGAACCATCTCTGGCATTGAAGAACAAGGTTGGTGTGATTCTTGTCTCCCTTGCAAAGAAGTCCAAGGTGAGACATCCCTTAGGCAGGAAGAACAACCCTAAACCAGAACACTTGAAGCCTAAGAAACTCAAGATGTCTACTAAGCCAAAGCCAAGAAAAAATTGTGCGTTCAAAATAGCGGTTAAGAGATCTCCAGAAATTGCGGAGAGCATGGATGTGAGTAAGGGTCAGATTGTGATTGTCAGCACTTTTGAGGGTGCCTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

282

Amino Acids

31.44

Weight (kDa)

10.39

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 387
AccB1I GGYRCC 2 cut(s) 246, 836
AccI GTMKAC 1 cut(s) 716
AccII CGCG 1 cut(s) 149
AciI CCGC 5 cut(s) 4, 149, 529, 758, 782
AclWI GGATC 1 cut(s) 331
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 1 cut(s) 323
AfeI AGCGCT 1 cut(s) 438
AfiI CCNNNNNNNGG 3 cut(s) 373, 479, 663
AgeI ACCGGT 1 cut(s) 550
AgsI TTSAA 5 cut(s) 352, 404, 598, 694, 751
AjnI CCWGG 3 cut(s) 280, 356, 366
AluBI AGCT 6 cut(s) 69, 103, 298, 304, 443, 571
AluI AGCT 6 cut(s) 69, 103, 298, 304, 443, 571
Alw26I GTCTC 3 cut(s) 559, 628, 643
AlwI GGATC 1 cut(s) 331
Aor51HI AGCGCT 1 cut(s) 438
AoxI GGCC 4 cut(s) 48, 283, 408, 514
ApeKI GCWGC 2 cut(s) 91, 262
AsiGI ACCGGT 1 cut(s) 550
AspLEI GCGC 3 cut(s) 249, 388, 439
AspS9I GGNCC 3 cut(s) 220, 408, 515
AsuHPI GGTGA 3 cut(s) 190, 309, 658
AsuNHI GCTAGC 1 cut(s) 439
AvaII GGWCC 1 cut(s) 220
AxyI CCTNAGG 2 cut(s) 426, 658
BanI GGYRCC 2 cut(s) 246, 836
BbvI GCAGC 2 cut(s) 78, 249
BccI CCATC 2 cut(s) 336, 592
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 282, 358, 368
BcoDI GTCTC 3 cut(s) 559, 628, 643
BfaI CTAG 4 cut(s) 104, 129, 440, 563
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 2 cut(s) 250, 440
BglI GCCNNNNNGGC 1 cut(s) 255
BglII AGATCT 1 cut(s) 767
BisI GCNGC 3 cut(s) 5, 92, 263
BlsI GCNGC 3 cut(s) 6, 93, 264
Bme1390I CCNGG 3 cut(s) 282, 358, 368
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 3 cut(s) 220, 408, 515
BmiI GGNNCC 2 cut(s) 248, 838
BmrFI CCNGG 3 cut(s) 282, 358, 368
BmrI ACTGGG 2 cut(s) 263, 461
BmsI GCATC 2 cut(s) 218, 373
BmtI GCTAGC 1 cut(s) 443
BmuI ACTGGG 2 cut(s) 263, 461
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 756
BpuEI CTTGAG 2 cut(s) 284, 692
BsaHI GRCGYC 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 3 cut(s) 45, 356, 642
BsaWI WCCGGW 1 cut(s) 550
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 3 cut(s) 373, 479, 663
Bse118I RCCGGY 2 cut(s) 285, 550
Bse1I ACTGG 3 cut(s) 28, 258, 467
Bse21I CCTNAGG 2 cut(s) 426, 658
Bse3DI GCAATG 1 cut(s) 14
BseBI CCWGG 3 cut(s) 282, 358, 368
BseDI CCNNGG 3 cut(s) 45, 356, 642
BseGI GGATG 4 cut(s) 328, 388, 652, 799
BseLI CCNNNNNNNGG 3 cut(s) 373, 479, 663
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 233, 324, 410
BseNI ACTGG 3 cut(s) 28, 258, 467
BseRI GAGGAG 1 cut(s) 547
BseXI GCAGC 2 cut(s) 78, 249
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 4 cut(s) 50, 285, 410, 516
BshNI GGYRCC 2 cut(s) 246, 836
BshTI ACCGGT 1 cut(s) 550
BsiSI CCGG 2 cut(s) 286, 551
BslFI GGGAC 2 cut(s) 133, 448
BslI CCNNNNNNNGG 3 cut(s) 373, 479, 663
BsmAI GTCTC 3 cut(s) 559, 628, 643
BsmFI GGGAC 2 cut(s) 133, 448
BsnI GGCC 4 cut(s) 50, 285, 410, 516
Bso31I GGTCTC 1 cut(s) 559
Bsp143I GATC 2 cut(s) 336, 767
BspACI CCGC 5 cut(s) 4, 149, 529, 758, 782
BspANI GGCC 4 cut(s) 50, 285, 410, 516
BspCNI CTCAG 3 cut(s) 234, 325, 409
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 248, 838
BspOI GCTAGC 1 cut(s) 443
BspPI GGATC 1 cut(s) 331
BspT107I GGYRCC 2 cut(s) 246, 836
BspTNI GGTCTC 1 cut(s) 559
BsrDI GCAATG 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 285, 550
BsrI ACTGG 3 cut(s) 28, 258, 467
BssAI RCCGGY 2 cut(s) 285, 550
BssECI CCNNGG 3 cut(s) 45, 356, 642
BssMI GATC 2 cut(s) 336, 767
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 45, 642
Bst2UI CCWGG 3 cut(s) 282, 358, 368
Bst4CI ACNGT 2 cut(s) 220, 321
Bst6I CTCTTC 1 cut(s) 482
BstACI GRCGYC 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 260, 296, 441
BstDEI CTNAG 7 cut(s) 242, 333, 396, 426, 658, 699, 720
BstENI CCTNNNNNAGG 3 cut(s) 371, 477, 661
BstF5I GGATG 4 cut(s) 328, 388, 652, 799
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 2 cut(s) 250, 440
BstHHI GCGC 3 cut(s) 249, 388, 439
BstKTI GATC 2 cut(s) 339, 770
BstMAI GTCTC 3 cut(s) 559, 628, 643
BstMBI GATC 2 cut(s) 336, 767
BstMWI GCNNNNNNNGC 5 cut(s) 56, 100, 255, 291, 392
BstNI CCWGG 3 cut(s) 282, 358, 368
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 3 cut(s) 280, 356, 366
BstSFI CTRYAG 1 cut(s) 432
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 78, 249
BstX2I RGATCY 2 cut(s) 336, 767
BstXI CCANNNNNNTGG 1 cut(s) 288
BstYI RGATCY 2 cut(s) 336, 767
Bsu36I CCTNAGG 2 cut(s) 426, 658
BsuRI GGCC 4 cut(s) 50, 285, 410, 516
BtsCI GGATG 4 cut(s) 328, 388, 652, 799
Cac8I GCNNGC 3 cut(s) 260, 296, 441
CfoI GCGC 3 cut(s) 249, 388, 439
Cfr10I RCCGGY 2 cut(s) 285, 550
Cfr13I GGNCC 3 cut(s) 220, 408, 515
CpoI CGGWCCG 1 cut(s) 220
CseI GACGC 2 cut(s) 215, 490
Csp6I GTAC 1 cut(s) 322
CspAI ACCGGT 1 cut(s) 550
CspI CGGWCCG 1 cut(s) 220
CviAII CATG 2 cut(s) 498, 790
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 7 cut(s) 242, 333, 396, 426, 658, 699, 720
DinI GGCGCC 1 cut(s) 248
DpnI GATC 2 cut(s) 338, 769
DpnII GATC 2 cut(s) 336, 767
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 2 cut(s) 45, 642
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 1 cut(s) 220
Eco47III AGCGCT 1 cut(s) 438
Eco81I CCTNAGG 2 cut(s) 426, 658
EcoNI CCTNNNNNAGG 3 cut(s) 371, 477, 661
EcoRII CCWGG 3 cut(s) 280, 356, 366
EcoT14I CCWWGG 2 cut(s) 45, 642
EgeI GGCGCC 1 cut(s) 248
EheI GGCGCC 1 cut(s) 248
ErhI CCWWGG 2 cut(s) 45, 642
FaeI CATG 2 cut(s) 501, 793
FaiI YATR 9 cut(s) 33, 84, 190, 311, 313, 449, 499, 791, 843
FaqI GGGAC 2 cut(s) 133, 448
FatI CATG 2 cut(s) 497, 789
FauNDI CATATG 1 cut(s) 311
FblI GTMKAC 1 cut(s) 716
Fnu4HI GCNGC 3 cut(s) 5, 92, 263
FokI GGATG 4 cut(s) 315, 395, 639, 806
Fsp4HI GCNGC 3 cut(s) 5, 92, 263
FspBI CTAG 4 cut(s) 104, 129, 440, 563
FspI TGCGCA 1 cut(s) 387
GlaI GCGC 3 cut(s) 248, 387, 438
GluI GCNGC 3 cut(s) 5, 92, 263
GsuI CTGGAG 1 cut(s) 756
HaeII RGCGCY 2 cut(s) 250, 440
HaeIII GGCC 4 cut(s) 50, 285, 410, 516
HapII CCGG 2 cut(s) 286, 551
HgaI GACGC 2 cut(s) 215, 490
HhaI GCGC 3 cut(s) 249, 388, 439
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 2 cut(s) 501, 793
Hin6I GCGC 3 cut(s) 247, 386, 437
HinP1I GCGC 3 cut(s) 247, 386, 437
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 5 cut(s) 24, 139, 225, 542, 616
HpaII CCGG 2 cut(s) 286, 551
HphI GGTGA 3 cut(s) 190, 309, 658
Hpy166II GTNNAC 3 cut(s) 198, 317, 717
Hpy188I TCNGA 4 cut(s) 205, 224, 243, 810
Hpy188III TCNNGA 6 cut(s) 166, 184, 229, 332, 709, 773
Hpy8I GTNNAC 3 cut(s) 198, 317, 717
Hpy99I CGWCG 3 cut(s) 209, 220, 273
HpyAV CCTTC 3 cut(s) 163, 350, 429
HpyCH4III ACNGT 2 cut(s) 220, 321
HpyCH4V TGCA 2 cut(s) 294, 632
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 100, 255, 291, 392
HpyF3I CTNAG 7 cut(s) 242, 333, 396, 426, 658, 699, 720
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 2 cut(s) 501, 793
HspAI GCGC 3 cut(s) 247, 386, 437
KasI GGCGCC 1 cut(s) 246
Kzo9I GATC 2 cut(s) 336, 767
LmnI GCTCC 2 cut(s) 74, 448
Lsp1109I GCAGC 2 cut(s) 78, 249
LweI GCATC 2 cut(s) 218, 373
MaeI CTAG 4 cut(s) 104, 129, 440, 563
MaeIII GTNAC 4 cut(s) 133, 143, 151, 451
MalI GATC 2 cut(s) 338, 769
MboI GATC 2 cut(s) 336, 767
MboII GAAGA 3 cut(s) 499, 610, 679
MflI RGATCY 2 cut(s) 336, 767
MluCI AATT 2 cut(s) 739, 777
Mly113I GGCGCC 1 cut(s) 247
MmeI TCCRAC 3 cut(s) 228, 360, 519
MnlI CCTC 7 cut(s) 211, 237, 335, 367, 483, 568, 826
MseI TTAA 1 cut(s) 762
MslI CAYNNNNRTG 1 cut(s) 794
MspI CCGG 2 cut(s) 286, 551
MspR9I CCNGG 3 cut(s) 282, 358, 368
MvaI CCWGG 3 cut(s) 282, 358, 368
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 5 cut(s) 56, 100, 255, 291, 392
NarI GGCGCC 1 cut(s) 247
NdeI CATATG 1 cut(s) 311
NdeII GATC 2 cut(s) 336, 767
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 2 cut(s) 501, 793
NlaIV GGNNCC 2 cut(s) 248, 838
NmuCI GTSAC 1 cut(s) 143
NsbI TGCGCA 1 cut(s) 387
NspI RCATGY 1 cut(s) 501
PfeI GAWTC 5 cut(s) 24, 139, 225, 542, 616
PinAI ACCGGT 1 cut(s) 550
PkrI GCNGC 3 cut(s) 6, 93, 264
PluTI GGCGCC 1 cut(s) 250
Psp6I CCWGG 3 cut(s) 280, 356, 366
PspGI CCWGG 3 cut(s) 280, 356, 366
PspN4I GGNNCC 2 cut(s) 248, 838
PspPI GGNCC 3 cut(s) 220, 408, 515
PsuI RGATCY 2 cut(s) 336, 767
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 794
Rsr2I CGGWCCG 1 cut(s) 220
RsrII CGGWCCG 1 cut(s) 220
SaqAI TTAA 1 cut(s) 762
SatI GCNGC 3 cut(s) 5, 92, 263
Sau3AI GATC 2 cut(s) 336, 767
Sau96I GGNCC 3 cut(s) 220, 408, 515
ScrFI CCNGG 3 cut(s) 282, 358, 368
SfaNI GCATC 2 cut(s) 218, 373
SfcI CTRYAG 1 cut(s) 432
SfoI GGCGCC 1 cut(s) 248
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 2 cut(s) 299, 707
SmoI CTYRAG 2 cut(s) 299, 707
Sse9I AATT 2 cut(s) 739, 777
SsiI CCGC 5 cut(s) 4, 149, 529, 758, 782
SspDI GGCGCC 1 cut(s) 246
SspMI CTAG 4 cut(s) 104, 129, 440, 563
StyD4I CCNGG 3 cut(s) 280, 356, 366
StyI CCWWGG 2 cut(s) 45, 642
TaaI ACNGT 2 cut(s) 220, 321
TaqI TCGA 3 cut(s) 22, 268, 579
TasI AATT 2 cut(s) 739, 777
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 5 cut(s) 24, 139, 225, 542, 616
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 2 cut(s) 91, 262
Tsp45I GTSAC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 220
XagI CCTNNNNNAGG 3 cut(s) 371, 477, 661
XceI RCATGY 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 716
XspI CTAG 4 cut(s) 104, 129, 440, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.