RLG00000029510

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000418
Physical Location & Seq
Reverse (-)
39659932 .. 39660942
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029510

Sequence Viewer

Length: 1011 bp
ATGGAATCGGGTGCTTACCCAGTTGGTTACGGATTTCATCCTACCGACCTCGAATTGGTGGCTTACTACCTCCACAACCGGGTTGCCATGGTTGATCAGTTTCGCTCGAGTCCAATCCTTGATTGCCCTGACTTCTATGGCAAAAATGAGCCCCGGCTCATTTGGGACATGTTCCGTGCCCAATCCAACAAGATGAAAGAGAAAGAAACTCTGTATTTCTTTACTCACCGCAAGAAATTGAATCCCAAAGCAAAAAAATTTGATAGAAAAGTGGGATCGGGAACATGGAGTGCCCAGTATTCAAAAAATGTTGTTGCTGCTGATGATAGTGTTGTTGGAATTAAGAGAGAATTTTGGTATGAGGGTGGATCTGATCCAAATCAAAATGGGGCTTGGTTGATGCAGAAGTACCAGATCACATCTCACAATGATCTCGTACTCTGCACCCTTAGAAAAAACCCCAGAAAACTTCCACCCCCAACTTCTCATGCTCCTCTGAATCATCAGAGCCACATTATTATTAGCAACAAAAGGAAGATGAAATTCAGTGAGGATGAGGAGGATATAAACACAAAGACAGAGACTTTCAAAAGAAAAAAAATGGAACCTCCTAAACAAAAACAACAACTAATGTTGCCCTCTACCTCTTACTTGTTTGAGCAGCAGTTTGATCAATCTAAAATATTGTTTGATATCGATGAGCTCTGTTATATTGATGATCAGCAGGAGAGCAGTGATTATCTCATGGCTGCATTTGCTCCATCATTTGTTACTGATGATCAGCTTGAGGTTGTTGAGGTTGAGAAGGAGGGCACTAATGATGATCTCATGGCCTCAGCTAGTCAACCGTTATCTACTAGTGATGATCAGATTCAAACTGTTCAAGTCGACGAGACTAATAATTCCATTACTAATTCTCCTAATGATACTTTATATGCGTATTTTGATCCTGAAGTTGAGGCATTCTTTGGCTTGACTACTGATGATATATACGATGATGATGACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

337

Amino Acids

38.74

Weight (kDa)

4.82

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 139 8.4e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 888
AciI CCGC 1 cut(s) 229
AclWI GGATC 4 cut(s) 283, 368, 376, 941
AcsI RAATTY 3 cut(s) 257, 350, 542
AcuI CTGAAG 1 cut(s) 972
AfaI GTAC 2 cut(s) 410, 438
AfiI CCNNNNNNNGG 2 cut(s) 55, 79
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 5 cut(s) 241, 303, 589, 875, 884
AhlI ACTAGT 1 cut(s) 857
AluBI AGCT 3 cut(s) 703, 784, 839
AluI AGCT 3 cut(s) 703, 784, 839
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 2 cut(s) 575, 887
AlwI GGATC 4 cut(s) 283, 368, 376, 941
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 831
ApeKI GCWGC 3 cut(s) 317, 661, 749
ApoI RAATTY 3 cut(s) 257, 350, 542
AsuC2I CCSGG 2 cut(s) 80, 154
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 3 cut(s) 181, 295, 815
BanII GRGCYC 2 cut(s) 153, 705
Bbv12I GWGCWC 1 cut(s) 705
BbvCI CCTCAGC 1 cut(s) 835
BbvI GCAGC 3 cut(s) 304, 673, 736
BccI CCATC 1 cut(s) 769
BclI TGATCA 5 cut(s) 94, 670, 718, 778, 865
BcnI CCSGG 2 cut(s) 80, 154
BcoDI GTCTC 2 cut(s) 575, 887
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 2 cut(s) 840, 858
BisI GCNGC 3 cut(s) 318, 662, 750
BlsI GCNGC 3 cut(s) 319, 663, 751
Bme1390I CCNGG 2 cut(s) 80, 154
BmeT110I CYCGRG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 2 cut(s) 80, 154
BmrI ACTGGG 2 cut(s) 14, 289
BmsI GCATC 1 cut(s) 390
BmuI ACTGGG 2 cut(s) 14, 289
Bpu10I CCTNAGC 1 cut(s) 835
BpuEI CTTGAG 1 cut(s) 806
BpuMI CCSGG 2 cut(s) 80, 154
Bsa29I ATCGAT 1 cut(s) 696
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 87, 152
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 79
Bse1I ACTGG 2 cut(s) 20, 295
Bse8I GATNNNNATC 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 87, 152
BseGI GGATG 2 cut(s) 37, 559
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 55, 79
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 2 cut(s) 20, 295
BseRI GAGGAG 2 cut(s) 483, 572
BseSI GKGCMC 3 cut(s) 181, 295, 815
BseXI GCAGC 3 cut(s) 304, 673, 736
BsgI GTGCAG 1 cut(s) 427
BshFI GGCC 1 cut(s) 833
BshVI ATCGAT 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 705
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 79, 154
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 55, 79
BsmAI GTCTC 2 cut(s) 575, 887
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 1 cut(s) 833
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 5 cut(s) 153, 181, 295, 705, 815
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 833
BspCNI CTCAG 1 cut(s) 848
BspDI ATCGAT 1 cut(s) 696
BspLI GGNNCC 1 cut(s) 606
BspPI GGATC 4 cut(s) 283, 368, 376, 941
BsrI ACTGG 2 cut(s) 20, 295
BssECI CCNNGG 2 cut(s) 87, 152
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 3 cut(s) 849, 880, 1007
BstDEI CTNAG 2 cut(s) 449, 835
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 37, 559
BstMAI GTCTC 2 cut(s) 575, 887
BstMWI GCNNNNNNNGC 1 cut(s) 755
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 78, 152
BstSLI GKGCMC 3 cut(s) 181, 295, 815
BstV1I GCAGC 3 cut(s) 304, 673, 736
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
Bsu15I ATCGAT 1 cut(s) 696
BsuRI GGCC 1 cut(s) 833
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 37, 559
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 2 cut(s) 553, 739
ClaI ATCGAT 1 cut(s) 696
Csp6I GTAC 2 cut(s) 409, 437
CviAII CATG 6 cut(s) 88, 169, 285, 488, 745, 829
CviQI GTAC 2 cut(s) 409, 437
DdeI CTNAG 2 cut(s) 449, 835
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 2 cut(s) 153, 705
Eco32I GATATC 1 cut(s) 694
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 703
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 2 cut(s) 153, 705
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 6 cut(s) 91, 172, 288, 491, 748, 832
FaqI GGGAC 1 cut(s) 179
FatI CATG 6 cut(s) 87, 168, 284, 487, 744, 828
FbaI TGATCA 5 cut(s) 94, 670, 718, 778, 865
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 3 cut(s) 318, 662, 750
FokI GGATG 2 cut(s) 24, 566
FriOI GRGCYC 2 cut(s) 153, 705
Fsp4HI GCNGC 3 cut(s) 318, 662, 750
FspBI CTAG 2 cut(s) 840, 858
GluI GCNGC 3 cut(s) 318, 662, 750
HaeIII GGCC 1 cut(s) 833
HapII CCGG 2 cut(s) 79, 154
Hin1II CATG 6 cut(s) 91, 172, 288, 491, 748, 832
HincII GTYRAC 2 cut(s) 845, 889
HindII GTYRAC 2 cut(s) 845, 889
HinfI GANTC 5 cut(s) 5, 109, 241, 499, 871
HpaII CCGG 2 cut(s) 79, 154
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 845, 889
Hpy188I TCNGA 4 cut(s) 373, 498, 507, 870
Hpy188III TCNNGA 2 cut(s) 279, 950
Hpy8I GTNNAC 2 cut(s) 845, 889
Hpy99I CGWCG 1 cut(s) 893
HpyAV CCTTC 1 cut(s) 799
HpyCH4III ACNGT 3 cut(s) 849, 880, 1007
HpyCH4V TGCA 3 cut(s) 403, 444, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 755
HpyF3I CTNAG 2 cut(s) 449, 835
Hsp92II CATG 6 cut(s) 91, 172, 288, 491, 748, 832
Ksp22I TGATCA 5 cut(s) 94, 670, 718, 778, 865
LmnI GCTCC 2 cut(s) 496, 763
LpnPI CCDG 9 cut(s) 33, 92, 141, 167, 308, 425, 475, 710, 963
Lsp1109I GCAGC 3 cut(s) 304, 673, 736
LweI GCATC 1 cut(s) 390
MaeI CTAG 2 cut(s) 840, 858
MaeIII GTNAC 2 cut(s) 26, 769
MboII GAAGA 1 cut(s) 547
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 5 cut(s) 153, 181, 295, 705, 815
MluCI AATT 8 cut(s) 53, 236, 257, 339, 350, 542, 901, 913
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 210, 316
MseI TTAA 1 cut(s) 342
MspI CCGG 2 cut(s) 79, 154
MspR9I CCNGG 2 cut(s) 80, 154
Mva1269I GAATGC 1 cut(s) 962
MwoI GCNNNNNNNGC 1 cut(s) 755
NciI CCSGG 2 cut(s) 80, 154
NcoI CCATGG 1 cut(s) 87
NlaIII CATG 6 cut(s) 91, 172, 288, 491, 748, 832
NlaIV GGNNCC 1 cut(s) 606
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 106
PciI ACATGT 1 cut(s) 168
PctI GAATGC 1 cut(s) 962
PfeI GAWTC 4 cut(s) 5, 241, 499, 871
PkrI GCNGC 3 cut(s) 319, 663, 751
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PscI ACATGT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 705
PspN4I GGNNCC 1 cut(s) 606
PspXI VCTCGAGB 1 cut(s) 106
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 2 cut(s) 410, 438
RsaNI GTAC 2 cut(s) 409, 437
SacI GAGCTC 1 cut(s) 705
SalI GTCGAC 1 cut(s) 887
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 318, 662, 750
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 80, 154
SduI GDGCHC 5 cut(s) 153, 181, 295, 705, 815
SetI ASST 9 cut(s) 51, 72, 610, 647, 705, 786, 792, 801, 841
SfaNI GCATC 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 2 cut(s) 106, 785
SmoI CTYRAG 2 cut(s) 106, 785
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 8 cut(s) 53, 236, 257, 339, 350, 542, 901, 913
SsiI CCGC 1 cut(s) 229
SspI AATATT 1 cut(s) 684
SspMI CTAG 2 cut(s) 840, 858
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 78, 152
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 3 cut(s) 849, 880, 1007
TaqI TCGA 4 cut(s) 51, 107, 696, 888
TasI AATT 8 cut(s) 53, 236, 257, 339, 350, 542, 901, 913
TfiI GAWTC 4 cut(s) 5, 241, 499, 871
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 553, 739
TseI GCWGC 3 cut(s) 317, 661, 749
TspDTI ATGAA 3 cut(s) 26, 209, 554
TspGWI ACGGA 2 cut(s) 45, 164
TspRI CASTG 2 cut(s) 553, 739
XapI RAATTY 3 cut(s) 257, 350, 542
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 2 cut(s) 840, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.