Rroxscaffold_3G00226320

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000418
Physical Location & Seq
Reverse (-)
9812038 .. 9812702
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226320.1

Sequence Viewer

Length: 645 bp
ATGGAATTAGGTTTTCCAGTGGGTGTGAGATTTTATCCTACTGACCAGGAGCTGGTGGGTCACTACCTCCACAACAGAGCTGTTATGGGTGACCAGTTCCAGACCAAATTCGTCTCCGATTGTCCTGATTTTTATGGACAAAACGAGCCTTGGGTTATTTGGGACTTTTATGGTGGGAATAAATCTAGAAATGTAGAGGCTCTCTATTTCTTCACACATCGCAGCAAGTTGAATCCCACCGCTGAGTGCTTTGATCAGAAGGTGGGTTCCGGAACTTGGAGGGAGCAGCACTCGGAAGATGTTGTTGCCAAGGACGACAGTGTTATGGGAATCAGTCGACATTTTCGGTATGAGGGTGGATGTGATTCTCATCAGAATGGGGCTTGGCTGATGCAAGAGTACCAGATCGTGACTACCACTCACAACAATGATGCTACTGATCAAGAACTTGTACTCTGCACCTTGATGAAGAACCCTGAAAAACTACCACTACCAACAACAGCTACTGCGAAGAATGGTAATGATGTCATCAACCTAGCTAGAAACCCAAGGAGCAGAGAGACTTGTGAACAGCAACAAGCTGGCAGCAGCACTCTTGTTGATCAAGATCATCATCAGCCGATCGATTATGGTGGAAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

214

Amino Acids

24.39

Weight (kDa)

5.21

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 136 3e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 52
AccI GTMKAC 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 2 cut(s) 401, 453
AfiI CCNNNNNNNGG 2 cut(s) 52, 276
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 5 cut(s) 52, 80, 503, 539, 581
AluI AGCT 5 cut(s) 52, 80, 503, 539, 581
Alw26I GTCTC 2 cut(s) 118, 554
AlwNI CAGNNNCTG 2 cut(s) 52, 506
Aor13HI TCCGGA 1 cut(s) 269
ApeKI GCWGC 4 cut(s) 222, 286, 585, 588
ApoI RAATTY 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 101
BbvI GCAGC 4 cut(s) 234, 298, 597, 600
BciT130I CCWGG 1 cut(s) 47
BclI TGATCA 3 cut(s) 253, 439, 601
BcoDI GTCTC 2 cut(s) 118, 554
BfaI CTAG 3 cut(s) 186, 536, 540
BisI GCNGC 4 cut(s) 223, 287, 586, 589
BlsI GCNGC 4 cut(s) 224, 288, 587, 590
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 381, 421
BplI GAGNNNNNCTC 2 cut(s) 275, 307
Bsa29I ATCGAT 1 cut(s) 624
BsaBI GATNNNNATC 3 cut(s) 369, 606, 612
BsaJI CCNNGG 3 cut(s) 149, 309, 548
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 276
Bse1I ACTGG 2 cut(s) 17, 94
Bse8I GATNNNNATC 3 cut(s) 369, 606, 612
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 3 cut(s) 149, 309, 548
BseGI GGATG 1 cut(s) 365
BseJI GATNNNNATC 3 cut(s) 369, 606, 612
BseLI CCNNNNNNNGG 2 cut(s) 52, 276
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 17, 94
BseXI GCAGC 4 cut(s) 234, 298, 597, 600
BsgI GTGCAG 1 cut(s) 442
Bsh1285I CGRYCG 1 cut(s) 624
BshVI ATCGAT 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 624
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 52, 276
BsmAI GTCTC 2 cut(s) 118, 554
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 6 cut(s) 253, 405, 439, 601, 607, 621
BspACI CCGC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 624
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 268
BsrI ACTGG 2 cut(s) 17, 94
BssECI CCNNGG 3 cut(s) 149, 309, 548
BssMI GATC 6 cut(s) 253, 405, 439, 601, 607, 621
BssT1I CCWWGG 3 cut(s) 149, 309, 548
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 631
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 6 cut(s) 256, 408, 442, 604, 610, 624
BstMAI GTCTC 2 cut(s) 118, 554
BstMBI GATC 6 cut(s) 253, 405, 439, 601, 607, 621
BstMCI CGRYCG 1 cut(s) 624
BstNI CCWGG 1 cut(s) 47
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 4 cut(s) 234, 298, 597, 600
Bsu15I ATCGAT 1 cut(s) 624
BsuTUI ATCGAT 1 cut(s) 624
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 24, 325
Cac8I GCNNGC 1 cut(s) 583
CaiI CAGNNNCTG 2 cut(s) 52, 506
ClaI ATCGAT 1 cut(s) 624
Csp6I GTAC 2 cut(s) 400, 452
CviQI GTAC 2 cut(s) 400, 452
DdeI CTNAG 1 cut(s) 243
DpnI GATC 6 cut(s) 255, 407, 441, 603, 609, 623
DpnII GATC 6 cut(s) 253, 405, 439, 601, 607, 621
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Eco130I CCWWGG 3 cut(s) 149, 309, 548
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 3 cut(s) 149, 309, 548
ErhI CCWWGG 3 cut(s) 149, 309, 548
Esp3I CGTCTC 1 cut(s) 118
FaiI YATR 6 cut(s) 86, 135, 171, 326, 351, 630
FaqI GGGAC 1 cut(s) 176
FbaI TGATCA 3 cut(s) 253, 439, 601
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 4 cut(s) 223, 287, 586, 589
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 4 cut(s) 223, 287, 586, 589
FspBI CTAG 3 cut(s) 186, 536, 540
GluI GCNGC 4 cut(s) 223, 287, 586, 589
HapII CCGG 1 cut(s) 270
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HinfI GANTC 3 cut(s) 232, 330, 365
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 338, 569
Hpy188I TCNGA 4 cut(s) 118, 258, 295, 375
Hpy188III TCNNGA 7 cut(s) 100, 125, 186, 270, 409, 443, 605
Hpy8I GTNNAC 2 cut(s) 338, 569
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 394, 459
HpyF3I CTNAG 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 269
Ksp22I TGATCA 3 cut(s) 253, 439, 601
Kzo9I GATC 6 cut(s) 253, 405, 439, 601, 607, 621
LmnI GCTCC 3 cut(s) 49, 283, 552
Lsp1109I GCAGC 4 cut(s) 234, 298, 597, 600
LweI GCATC 2 cut(s) 381, 421
MaeI CTAG 3 cut(s) 186, 536, 540
MaeIII GTNAC 3 cut(s) 59, 89, 409
MalI GATC 6 cut(s) 255, 407, 441, 603, 609, 623
MboI GATC 6 cut(s) 253, 405, 439, 601, 607, 621
MboII GAAGA 4 cut(s) 202, 308, 481, 523
MluCI AATT 2 cut(s) 5, 107
MnlI CCTC 4 cut(s) 77, 190, 273, 346
MroI TCCGGA 1 cut(s) 269
MslI CAYNNNNRTG 3 cut(s) 375, 426, 464
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
NdeII GATC 6 cut(s) 253, 405, 439, 601, 607, 621
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 3 cut(s) 59, 89, 409
PfeI GAWTC 3 cut(s) 232, 330, 365
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 4 cut(s) 224, 288, 587, 590
Ple19I CGATCG 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 45
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 268
PstNI CAGNNNCTG 2 cut(s) 52, 506
PvuI CGATCG 1 cut(s) 624
RsaI GTAC 2 cut(s) 401, 453
RsaNI GTAC 2 cut(s) 400, 452
RseI CAYNNNNRTG 3 cut(s) 375, 426, 464
SalI GTCGAC 1 cut(s) 336
SatI GCNGC 4 cut(s) 223, 287, 586, 589
Sau3AI GATC 6 cut(s) 253, 405, 439, 601, 607, 621
ScrFI CCNGG 1 cut(s) 47
SfaNI GCATC 2 cut(s) 381, 421
SmiMI CAYNNNNRTG 3 cut(s) 375, 426, 464
Sse9I AATT 2 cut(s) 5, 107
SsiI CCGC 1 cut(s) 240
SspMI CTAG 3 cut(s) 186, 536, 540
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 3 cut(s) 149, 309, 548
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 337, 624
TasI AATT 2 cut(s) 5, 107
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 3 cut(s) 232, 330, 365
TscAI CASTG 2 cut(s) 24, 325
TseFI GTSAC 3 cut(s) 59, 89, 409
TseI GCWGC 4 cut(s) 222, 286, 585, 588
Tsp45I GTSAC 3 cut(s) 59, 89, 409
TspDTI ATGAA 1 cut(s) 482
TspRI CASTG 2 cut(s) 24, 325
Van91I CCANNNNNTGG 1 cut(s) 52
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 337
XspI CTAG 3 cut(s) 186, 536, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.