Rw3G025710
NAC Family

(NAC) domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
34568070 .. 34570850
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025710.1

Sequence Viewer

Length: 1365 bp
ATGGGTTATCCGATCGGGTACATGTTTCATCCCACAGATGAAGAACTTGTGGGTTACTTTCTCCAGCACAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGATCTCAGAGTATTCGGAGTTTTACTGCCAAGAAGAACATTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATAGAGAGCCTTTCCTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCAGTTTGATCGCAAAGTAGGCTCGGGAATATGGAGCGGGCAATTTTCCAGAGAGGTTGTGGCCGAGGATAGAGACACCGGATGTTGTATTACTGGAATGAGGAGGGAATTTAGGTACGAGGGTGGGTGTGATCCTGAACAAAACAAGTCTTGGTTGATGCAAGAGTACGAGTTGTGTGCCACTGATGTCTTGGTGTTGTGCACCTTGAAGAAGAACCCAAGAAAAGCACGATCATCAACATCAATAGCAGTTGATGGCAGAGAGCATCAACAGATAATATTACTTTACAGCAACAAAGATAAGAGTCACAAAATTTTACTTGGAATTTCTTCATGTAGGTTTCATCCCACAGATGAAGAACTTGTGGGATACTTTCTCCAGCACAGGGACAGGATGGGCCATCAGTTGAACTCGAATGAGATCTCTGAGTATTCGGAGTTTTACGGCCAAGAAGAACCTTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCCTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGCAAAGTAGGCTCGGGAATGTGGAGCGGGCAGTTTTCCAGAGAGAAGAACCCAAGAAAAGCGCGATCATCAACAACAACAGCTACTACTAGTAGTGCTCAGACCAATGGTAAGAAGAGGAAGAGGATTGTTGATAATCAACTGAGAAAAACCAAGGCAGTGAGATCGGAAAAGGCTGAGACTTGTGCGGAACAACAATCTACCATCTGTGTCGATCTTACAGATCTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAACTGTTGCAAGTTGTTGATGAAGATTATCATCCTGAGCTCTATCCTGAGTTATATCCTGATAATGGGCCTCTGTTTTTTATGGAGGAACTTCTTGCACCAAGTCCTCTAAATGTACCGGATCCTCTTCCACACTTGGAGTCTAATGAGTCTCAGTCTCGGGATCATTCATATGAAGACAATAGCTTCATCAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGTATTGTATCCAATGATCAATACTTGGGGCTGCAACGACTTAACATGGTAGACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

52.47

Weight (kDa)

5.44

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 138 1.1e-18 No apical meristem (NAM) protein
NAM PF02365 192 - 285 3.1e-12 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 276, 831
AccI GTMKAC 1 cut(s) 1356
AccII CGCG 1 cut(s) 868
AciI CCGC 5 cut(s) 276, 796, 831, 992, 1266
AclWI GGATC 4 cut(s) 365, 1178, 1191, 1233
AcoI YGGCCR 2 cut(s) 300, 685
AcsI RAATTY 4 cut(s) 347, 552, 564, 1271
AcuI CTGAAG 1 cut(s) 1288
AfaI GTAC 4 cut(s) 20, 356, 407, 1179
AfiI CCNNNNNNNGG 3 cut(s) 70, 625, 1127
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 5 cut(s) 226, 448, 649, 781, 1277
AhlI ACTAGT 1 cut(s) 893
AjnI CCWGG 1 cut(s) 74
AloI GAACNNNNNNTCC 4 cut(s) 155, 187, 710, 742
AluBI AGCT 3 cut(s) 887, 1102, 1248
AluI AGCT 3 cut(s) 887, 1102, 1248
Alw21I GWGCWC 3 cut(s) 443, 904, 1104
Alw26I GTCTC 5 cut(s) 306, 977, 1031, 1218, 1224
Alw44I GTGCAC 1 cut(s) 439
AlwI GGATC 4 cut(s) 365, 1178, 1191, 1233
Ama87I CYCGRG 3 cut(s) 262, 817, 1221
AoxI GGCC 5 cut(s) 72, 300, 637, 685, 1130
ApaLI GTGCAC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 1336
ApoI RAATTY 4 cut(s) 347, 552, 564, 1271
Asp700I GAANNNNTTC 1 cut(s) 568
AspLEI GCGC 1 cut(s) 868
AspS9I GGNCC 3 cut(s) 72, 637, 1130
AsuHPI GGTGA 2 cut(s) 199, 754
AvaI CYCGRG 3 cut(s) 262, 817, 1221
BaeGI GKGCMC 1 cut(s) 443
BaeI ACNNNNGTAYC 2 cut(s) 346, 379
BamHI GGATCC 1 cut(s) 1183
BanII GRGCYC 1 cut(s) 1104
BbsI GAAGAC 2 cut(s) 1245, 1299
Bbv12I GWGCWC 3 cut(s) 443, 904, 1104
BbvI GCAGC 1 cut(s) 1323
BccI CCATC 6 cut(s) 73, 488, 628, 648, 734, 1016
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 6 cut(s) 230, 264, 398, 432, 951, 985
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 2 cut(s) 602, 1324
BclI TGATCA 1 cut(s) 1321
BcoDI GTCTC 5 cut(s) 306, 977, 1031, 1218, 1224
BcuI ACTAGT 1 cut(s) 893
BfaI CTAG 1 cut(s) 894
BfuI GTATCC 2 cut(s) 602, 1324
BglII AGATCT 3 cut(s) 105, 660, 1027
BisI GCNGC 1 cut(s) 1337
BlsI GCNGC 1 cut(s) 1338
Bme1390I CCNGG 1 cut(s) 76
BmeT110I CYCGRG 3 cut(s) 262, 817, 1221
BmgT120I GGNCC 3 cut(s) 72, 637, 1130
BmiI GGNNCC 3 cut(s) 172, 727, 1185
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 387, 514
BpiI GAAGAC 2 cut(s) 1245, 1299
BplI GAGNNNNNCTC 2 cut(s) 735, 767
BpmI CTGGAG 2 cut(s) 47, 602
Bpu10I CCTNAGC 1 cut(s) 1098
BsaBI GATNNNNATC 1 cut(s) 1092
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 3 cut(s) 303, 698, 957
BsaWI WCCGGW 2 cut(s) 317, 1180
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 625, 1127
Bse1I ACTGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 1092
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 3 cut(s) 303, 698, 957
BseGI GGATG 8 cut(s) 28, 84, 187, 326, 583, 639, 742, 1093
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 3 cut(s) 70, 625, 1127
BseMII CTCAG 8 cut(s) 123, 657, 917, 938, 972, 1089, 1101, 1229
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 1 cut(s) 1323
Bsh1236I CGCG 1 cut(s) 868
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 5 cut(s) 74, 302, 639, 687, 1132
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 3 cut(s) 443, 904, 1104
BsiHKCI CYCGRG 3 cut(s) 262, 817, 1221
BsiSI CCGG 2 cut(s) 318, 1181
BslFI GGGAC 3 cut(s) 170, 641, 725
BslI CCNNNNNNNGG 3 cut(s) 70, 625, 1127
BsmAI GTCTC 5 cut(s) 306, 977, 1031, 1218, 1224
BsmFI GGGAC 3 cut(s) 170, 641, 725
BsnI GGCC 5 cut(s) 74, 302, 639, 687, 1132
Bso31I GGTCTC 1 cut(s) 1031
BsoBI CYCGRG 3 cut(s) 262, 817, 1221
Bsp1286I GDGCHC 3 cut(s) 443, 904, 1104
BspACI CCGC 5 cut(s) 276, 796, 831, 992, 1266
BspANI GGCC 5 cut(s) 74, 302, 639, 687, 1132
BspCNI CTCAG 8 cut(s) 122, 658, 916, 939, 973, 1090, 1102, 1228
BspFNI CGCG 1 cut(s) 868
BspLI GGNNCC 3 cut(s) 172, 727, 1185
BspPI GGATC 4 cut(s) 365, 1178, 1191, 1233
BspTNI GGTCTC 1 cut(s) 1031
BsrBI CCGCTC 2 cut(s) 276, 831
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 3 cut(s) 303, 698, 957
BssT1I CCWWGG 2 cut(s) 698, 957
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 4 cut(s) 167, 722, 1068, 1284
Bst6I CTCTTC 4 cut(s) 914, 920, 1029, 1194
BstC8I GCNNGC 4 cut(s) 239, 278, 794, 833
BstDEI CTNAG 8 cut(s) 109, 666, 903, 947, 981, 1098, 1110, 1215
BstF5I GGATG 8 cut(s) 28, 84, 187, 326, 583, 639, 742, 1093
BstFNI CGCG 1 cut(s) 868
BstHHI GCGC 1 cut(s) 868
BstMAI GTCTC 5 cut(s) 306, 977, 1031, 1218, 1224
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 258, 813
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 443
BstUI CGCG 1 cut(s) 868
BstV1I GCAGC 1 cut(s) 1323
BstV2I GAAGAC 2 cut(s) 1245, 1299
BstX2I RGATCY 4 cut(s) 105, 660, 1027, 1183
BstYI RGATCY 4 cut(s) 105, 660, 1027, 1183
BsuI GTATCC 2 cut(s) 602, 1324
BsuRI GGCC 5 cut(s) 74, 302, 639, 687, 1132
BtsCI GGATG 8 cut(s) 28, 84, 187, 326, 583, 639, 742, 1093
BtsI GCAGTG 1 cut(s) 969
BtsIMutI CAGTG 2 cut(s) 420, 969
Cac8I GCNNGC 4 cut(s) 239, 278, 794, 833
CfoI GCGC 1 cut(s) 868
Cfr13I GGNCC 3 cut(s) 72, 637, 1130
Csp6I GTAC 4 cut(s) 19, 355, 406, 1178
CspCI CAANNNNNGTGG 4 cut(s) 148, 183, 703, 738
CviAII CATG 3 cut(s) 22, 573, 1351
CviQI GTAC 4 cut(s) 19, 355, 406, 1178
DdeI CTNAG 8 cut(s) 109, 666, 903, 947, 981, 1098, 1110, 1215
EaeI YGGCCR 2 cut(s) 300, 685
Eam1104I CTCTTC 4 cut(s) 914, 920, 1029, 1194
EarI CTCTTC 4 cut(s) 914, 920, 1029, 1194
Ecl136II GAGCTC 1 cut(s) 1102
Eco130I CCWWGG 2 cut(s) 698, 957
Eco24I GRGCYC 1 cut(s) 1104
Eco31I GGTCTC 1 cut(s) 1031
Eco53kI GAGCTC 1 cut(s) 1102
Eco57I CTGAAG 1 cut(s) 1288
Eco88I CYCGRG 3 cut(s) 262, 817, 1221
EcoICRI GAGCTC 1 cut(s) 1102
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 698, 957
EcoT38I GRGCYC 1 cut(s) 1104
ErhI CCWWGG 2 cut(s) 698, 957
FaeI CATG 3 cut(s) 25, 576, 1354
FaiI YATR 8 cut(s) 23, 271, 574, 1117, 1145, 1234, 1236, 1352
FaqI GGGAC 3 cut(s) 170, 641, 725
FatI CATG 3 cut(s) 21, 572, 1350
FauI CCCGC 2 cut(s) 269, 824
FauNDI CATATG 1 cut(s) 1234
FbaI TGATCA 1 cut(s) 1321
FblI GTMKAC 1 cut(s) 1356
Fnu4HI GCNGC 1 cut(s) 1337
FokI GGATG 8 cut(s) 15, 91, 194, 333, 570, 646, 749, 1080
FriOI GRGCYC 1 cut(s) 1104
Fsp4HI GCNGC 1 cut(s) 1337
FspBI CTAG 1 cut(s) 894
GlaI GCGC 1 cut(s) 867
GluI GCNGC 1 cut(s) 1337
GsuI CTGGAG 2 cut(s) 47, 602
HaeIII GGCC 5 cut(s) 74, 302, 639, 687, 1132
HapII CCGG 2 cut(s) 318, 1181
HhaI GCGC 1 cut(s) 868
Hin1II CATG 3 cut(s) 25, 576, 1354
Hin6I GCGC 1 cut(s) 866
HinP1I GCGC 1 cut(s) 866
HinfI GANTC 4 cut(s) 544, 1051, 1202, 1211
HpaII CCGG 2 cut(s) 318, 1181
HphI GGTGA 2 cut(s) 199, 754
Hpy166II GTNNAC 2 cut(s) 441, 1357
Hpy188I TCNGA 8 cut(s) 12, 112, 121, 667, 676, 906, 973, 1048
Hpy8I GTNNAC 2 cut(s) 441, 1357
HpyCH4III ACNGT 4 cut(s) 167, 722, 1068, 1284
HpyCH4V TGCA 5 cut(s) 400, 441, 1072, 1160, 1339
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 813
HpyF3I CTNAG 8 cut(s) 109, 666, 903, 947, 981, 1098, 1110, 1215
Hsp92II CATG 3 cut(s) 25, 576, 1354
HspAI GCGC 1 cut(s) 866
Ksp22I TGATCA 1 cut(s) 1321
LmnI GCTCC 2 cut(s) 273, 828
Lsp1109I GCAGC 1 cut(s) 1323
LweI GCATC 2 cut(s) 387, 514
MaeI CTAG 1 cut(s) 894
MaeIII GTNAC 2 cut(s) 53, 545
MbiI CCGCTC 2 cut(s) 276, 831
MflI RGATCY 4 cut(s) 105, 660, 1027, 1183
MhlI GDGCHC 3 cut(s) 443, 904, 1104
MluCI AATT 6 cut(s) 281, 347, 552, 564, 1042, 1271
MlyI GAGTC 4 cut(s) 553, 1060, 1211, 1220
MroXI GAANNNNTTC 1 cut(s) 568
MseI TTAA 1 cut(s) 1347
MslI CAYNNNNRTG 2 cut(s) 99, 1233
MspA1I CMGCKG 1 cut(s) 1268
MspI CCGG 2 cut(s) 318, 1181
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 868
MwoI GCNNNNNNNGC 2 cut(s) 258, 813
NdeI CATATG 1 cut(s) 1234
NlaIII CATG 3 cut(s) 25, 576, 1354
NlaIV GGNNCC 3 cut(s) 172, 727, 1185
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 545
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 568
PkrI GCNGC 1 cut(s) 1338
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 4 cut(s) 552, 1059, 1210, 1219
PpsI GAGTC 4 cut(s) 552, 1059, 1210, 1219
PscI ACATGT 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 1104
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 172, 727, 1185
PspPI GGNCC 3 cut(s) 72, 637, 1130
PsuI RGATCY 4 cut(s) 105, 660, 1027, 1183
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 4 cut(s) 20, 356, 407, 1179
RsaNI GTAC 4 cut(s) 19, 355, 406, 1178
RseI CAYNNNNRTG 2 cut(s) 99, 1233
SacI GAGCTC 1 cut(s) 1104
SaqAI TTAA 1 cut(s) 1347
SatI GCNGC 1 cut(s) 1337
Sau96I GGNCC 3 cut(s) 72, 637, 1130
SchI GAGTC 4 cut(s) 553, 1060, 1211, 1220
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 3 cut(s) 443, 904, 1104
SetI ASST 8 cut(s) 297, 356, 446, 581, 700, 889, 1104, 1250
SfaNI GCATC 2 cut(s) 387, 514
SmiMI CAYNNNNRTG 2 cut(s) 99, 1233
SpeI ACTAGT 1 cut(s) 893
Sse9I AATT 6 cut(s) 281, 347, 552, 564, 1042, 1271
SsiI CCGC 5 cut(s) 276, 796, 831, 992, 1266
SspI AATATT 1 cut(s) 519
SspMI CTAG 1 cut(s) 894
SstI GAGCTC 1 cut(s) 1104
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 2 cut(s) 698, 957
TaaI ACNGT 4 cut(s) 167, 722, 1068, 1284
TaqI TCGA 4 cut(s) 98, 653, 1017, 1054
TasI AATT 6 cut(s) 281, 347, 552, 564, 1042, 1271
Tru1I TTAA 1 cut(s) 1347
Tru9I TTAA 1 cut(s) 1347
TscAI CASTG 2 cut(s) 427, 969
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 1 cut(s) 1336
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 9 cut(s) 17, 54, 561, 572, 609, 1098, 1221, 1240, 1251
TspRI CASTG 2 cut(s) 427, 969
VneI GTGCAC 1 cut(s) 439
XapI RAATTY 4 cut(s) 347, 552, 564, 1271
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 427
XmiI GTMKAC 1 cut(s) 1356
XmnI GAANNNNTTC 1 cut(s) 568
XspI CTAG 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.