FvH4_3g25200
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000418
Physical Location & Seq
Reverse (-)
18171084 .. 18172145
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25200.t1

Sequence Viewer

Length: 1062 bp
ATGGTGACACTAAGACCCAGGCAAGGTTCCAACAATAAGAAGCAAGGTTCCTCCGTTTCTGAAACCACGGGGACACCCAGATCCAGGCAAGGCTCCCAGAACAAGAAACAAGATTCCAAGAAACGATCGTCGTCAACAAACGAATCGGGTCTCCCGGTGGGTCTGAGGTTCAATCCTACAGACCACGAACTCGTCGATTACTATCTCCAGTCCCGGATCGCTCTTGGTGACAGCTTCCACTCCGATTTCGTCTCCGAATGTCCTAATTTTTACGGCGAAAATGAGCCCTGGGTTGTTTGGCAAATGTACGGCGGCGGTGAGTCCAAGAAAGAAGAGAATAAGACTCTCTATTTCTTCACCCACCGGAAAAGGTTGAGTCCCACTTCCACGCGCTTTGATCGGAAGGTCGGTTCCGGCACTTGGAGCGGCCAGTATCCCAGAGATGTTTTTGACGAGGAGGATGGCAGTGTTGTTATTGGGATCAAAAGGGAGTTTCGGTATGAGGAAGGTTGCGACGATCGTCACAACAAGGCTTGGTTGATGCAAGAATACCAGATTGTCGATGATGATTCCGATATTGTGTTATGTGCTTTGAGGAAGAACCATAGAACGCCACAACCTGCTCAGAGCTCCTCTGTTGTTGGAAAGACCAGAGTTGATGTAAAAAAGAGGAAGACCATTGTGGACAAGCCTAAAGCGAAAAGGCACAAAAAGAAAGAGATTTTTGATGAGGAAGAAGATGGCAGCAGTGTTGATGACCTGAGTATGGAACCACAAGGCACCAGTGTTGATATTGATCAGCCGAAAATGGAACAGATCAATTTCGAGTTGGATCAAGATCATCCCATGCTGCAAGTAGTTTCGCCCTTTGGCCAGCTGCATGATGATCAAGATTGTTATTATCCTGAACTGCTTGTTGATGATAACCCTGATACCTCTACTATTGATGACTTGCTTGCACAAACTCCAACTCGCTATGACAACAACAACTTCAACTTGGTATCAGGTGGTTCAGTTCAGGATGAGAGTGATAAGTTTTTGGATCTGCTGCTCAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

354

Amino Acids

40.3

Weight (kDa)

5.13

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 52 - 186 1.7e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 779
AccBSI CCGCTC 1 cut(s) 426
AccII CGCG 1 cut(s) 391
AciI CCGC 3 cut(s) 312, 315, 426
AclWI GGATC 5 cut(s) 75, 224, 488, 840, 1050
AcoI YGGCCR 2 cut(s) 427, 871
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 4 cut(s) 23, 84, 420, 766
AgsI TTSAA 2 cut(s) 172, 994
AjnI CCWGG 3 cut(s) 17, 83, 287
AloI GAACNNNNNNTCC 2 cut(s) 394, 426
AluBI AGCT 3 cut(s) 234, 630, 877
AluI AGCT 3 cut(s) 234, 630, 877
Alw21I GWGCWC 1 cut(s) 632
Alw26I GTCTC 2 cut(s) 155, 256
AlwI GGATC 5 cut(s) 75, 224, 488, 840, 1050
AoxI GGCC 2 cut(s) 427, 871
ApeKI GCWGC 4 cut(s) 744, 850, 877, 1048
AspLEI GCGC 1 cut(s) 393
AsuC2I CCSGG 2 cut(s) 155, 214
AsuHPI GGTGA 4 cut(s) 16, 239, 329, 349
BalI TGGCCA 1 cut(s) 873
BanI GGYRCC 1 cut(s) 779
BanII GRGCYC 2 cut(s) 288, 632
BbsI GAAGAC 1 cut(s) 680
Bbv12I GWGCWC 1 cut(s) 632
BbvI GCAGC 4 cut(s) 756, 837, 864, 1035
BccI CCATC 2 cut(s) 455, 734
BceAI ACGGC 2 cut(s) 289, 325
BciT130I CCWGG 3 cut(s) 19, 85, 289
BciVI GTATCC 1 cut(s) 444
BclI TGATCA 2 cut(s) 796, 886
BcnI CCSGG 2 cut(s) 155, 214
BcoDI GTCTC 2 cut(s) 155, 256
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 628
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 6 cut(s) 313, 427, 745, 851, 878, 1049
BlsI GCNGC 6 cut(s) 314, 428, 746, 852, 879, 1050
Bme1390I CCNGG 5 cut(s) 19, 85, 155, 214, 289
BmiI GGNNCC 6 cut(s) 28, 49, 94, 412, 771, 781
BmrFI CCNGG 5 cut(s) 19, 85, 155, 214, 289
BmsI GCATC 1 cut(s) 531
BoxI GACNNNNGTC 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 680
BpmI CTGGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 155, 214
BsaBI GATNNNNATC 3 cut(s) 201, 795, 837
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 4 cut(s) 17, 66, 287, 288
BsaWI WCCGGW 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 84, 420, 766
Bse1I ACTGG 3 cut(s) 208, 430, 783
Bse8I GATNNNNATC 3 cut(s) 201, 795, 837
BseBI CCWGG 3 cut(s) 19, 85, 289
BseDI CCNNGG 4 cut(s) 17, 66, 287, 288
BseGI GGATG 3 cut(s) 466, 841, 1027
BseJI GATNNNNATC 3 cut(s) 201, 795, 837
BseLI CCNNNNNNNGG 4 cut(s) 23, 84, 420, 766
BseMII CTCAG 3 cut(s) 155, 638, 752
BseNI ACTGG 3 cut(s) 208, 430, 783
BseRI GAGGAG 2 cut(s) 470, 622
BseXI GCAGC 4 cut(s) 756, 837, 864, 1035
Bsh1236I CGCG 1 cut(s) 391
Bsh1285I CGRYCG 2 cut(s) 128, 520
BshFI GGCC 2 cut(s) 429, 873
BshNI GGYRCC 1 cut(s) 779
BsiEI CGRYCG 2 cut(s) 128, 520
BsiHKAI GWGCWC 1 cut(s) 632
BsiSI CCGG 4 cut(s) 155, 214, 364, 414
BslFI GGGAC 3 cut(s) 85, 196, 363
BslI CCNNNNNNNGG 4 cut(s) 23, 84, 420, 766
BsmAI GTCTC 2 cut(s) 155, 256
BsmBI CGTCTC 1 cut(s) 256
BsmFI GGGAC 3 cut(s) 85, 196, 363
BsnI GGCC 2 cut(s) 429, 873
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 288, 632
BspACI CCGC 3 cut(s) 312, 315, 426
BspANI GGCC 2 cut(s) 429, 873
BspCNI CTCAG 3 cut(s) 156, 637, 753
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 6 cut(s) 28, 49, 94, 412, 771, 781
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 5 cut(s) 75, 224, 488, 840, 1050
BspT107I GGYRCC 1 cut(s) 779
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 426
BsrI ACTGG 3 cut(s) 208, 430, 783
BssECI CCNNGG 4 cut(s) 17, 66, 287, 288
Bst2UI CCWGG 3 cut(s) 19, 85, 289
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 875, 957
BstDEI CTNAG 4 cut(s) 11, 164, 624, 761
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 3 cut(s) 466, 841, 1027
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 393
BstMAI GTCTC 2 cut(s) 155, 256
BstMCI CGRYCG 2 cut(s) 128, 520
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNI CCWGG 3 cut(s) 19, 85, 289
BstPAI GACNNNNGTC 1 cut(s) 519
BstSCI CCNGG 5 cut(s) 17, 83, 153, 212, 287
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 4 cut(s) 756, 837, 864, 1035
BstV2I GAAGAC 1 cut(s) 680
BstX2I RGATCY 2 cut(s) 80, 1042
BstYI RGATCY 2 cut(s) 80, 1042
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 2 cut(s) 429, 873
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 3 cut(s) 466, 841, 1027
BtsI GCAGTG 2 cut(s) 472, 754
BtsIMutI CAGTG 3 cut(s) 472, 754, 790
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 2 cut(s) 875, 957
CfoI GCGC 1 cut(s) 393
Csp6I GTAC 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 2 cut(s) 847, 881
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 4 cut(s) 11, 164, 624, 761
EaeI YGGCCR 2 cut(s) 427, 871
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 630
Eco24I GRGCYC 2 cut(s) 288, 632
Eco31I GGTCTC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 630
EcoRII CCWGG 3 cut(s) 17, 83, 287
EcoT38I GRGCYC 2 cut(s) 288, 632
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 2 cut(s) 850, 884
FaiI YATR 7 cut(s) 501, 586, 606, 767, 848, 882, 978
FaqI GGGAC 3 cut(s) 85, 196, 363
FatI CATG 2 cut(s) 846, 880
FbaI TGATCA 2 cut(s) 796, 886
Fnu4HI GCNGC 6 cut(s) 313, 427, 745, 851, 878, 1049
FokI GGATG 3 cut(s) 473, 828, 1034
FriOI GRGCYC 2 cut(s) 288, 632
Fsp4HI GCNGC 6 cut(s) 313, 427, 745, 851, 878, 1049
GlaI GCGC 1 cut(s) 392
GluI GCNGC 6 cut(s) 313, 427, 745, 851, 878, 1049
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 2 cut(s) 429, 873
HapII CCGG 4 cut(s) 155, 214, 364, 414
HhaI GCGC 1 cut(s) 393
Hin1II CATG 2 cut(s) 850, 884
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 6 cut(s) 113, 143, 320, 343, 376, 569
HpaII CCGG 4 cut(s) 155, 214, 364, 414
HphI GGTGA 4 cut(s) 16, 239, 329, 349
Hpy166II GTNNAC 2 cut(s) 135, 685
Hpy188I TCNGA 7 cut(s) 61, 165, 244, 256, 402, 574, 627
Hpy188III TCNNGA 4 cut(s) 836, 890, 905, 1019
Hpy8I GTNNAC 2 cut(s) 135, 685
Hpy99I CGWCG 3 cut(s) 133, 197, 518
HpyAV CCTTC 2 cut(s) 397, 500
HpyCH4V TGCA 4 cut(s) 544, 853, 880, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 4 cut(s) 11, 164, 624, 761
Hsp92II CATG 2 cut(s) 850, 884
HspAI GCGC 1 cut(s) 391
Ksp22I TGATCA 2 cut(s) 796, 886
LmnI GCTCC 3 cut(s) 98, 423, 635
Lsp1109I GCAGC 4 cut(s) 756, 837, 864, 1035
LweI GCATC 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 4, 227, 521
MbiI CCGCTC 1 cut(s) 426
MboII GAAGA 6 cut(s) 344, 346, 610, 685, 746, 749
MflI RGATCY 2 cut(s) 80, 1042
MhlI GDGCHC 2 cut(s) 288, 632
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 2 cut(s) 265, 820
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 3 cut(s) 329, 337, 385
MmeI TCCRAC 4 cut(s) 54, 622, 810, 992
Mox20I TGGCCA 1 cut(s) 873
MscI TGGCCA 1 cut(s) 873
Msp20I TGGCCA 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 877
MspI CCGG 4 cut(s) 155, 214, 364, 414
MspR9I CCNGG 5 cut(s) 19, 85, 155, 214, 289
MvaI CCWGG 3 cut(s) 19, 85, 289
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 423
NciI CCSGG 2 cut(s) 155, 214
NlaIII CATG 2 cut(s) 850, 884
NlaIV GGNNCC 6 cut(s) 28, 49, 94, 412, 771, 781
NmuCI GTSAC 3 cut(s) 4, 227, 521
PasI CCCWGGG 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 3 cut(s) 113, 143, 569
PfoI TCCNGGA 1 cut(s) 212
PkrI GCNGC 6 cut(s) 314, 428, 746, 852, 879, 1050
Ple19I CGATCG 2 cut(s) 128, 520
PleI GAGTC 3 cut(s) 328, 337, 384
PpsI GAGTC 3 cut(s) 328, 337, 384
PshAI GACNNNNGTC 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 632
Psp6I CCWGG 3 cut(s) 17, 83, 287
PspGI CCWGG 3 cut(s) 17, 83, 287
PspN4I GGNNCC 6 cut(s) 28, 49, 94, 412, 771, 781
PsuI RGATCY 2 cut(s) 80, 1042
PvuI CGATCG 2 cut(s) 128, 520
PvuII CAGCTG 1 cut(s) 877
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SacI GAGCTC 1 cut(s) 632
SatI GCNGC 6 cut(s) 313, 427, 745, 851, 878, 1049
SchI GAGTC 3 cut(s) 329, 337, 385
ScrFI CCNGG 5 cut(s) 19, 85, 155, 214, 289
SduI GDGCHC 2 cut(s) 288, 632
SfaNI GCATC 1 cut(s) 531
SfcI CTRYAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 265, 820
SsiI CCGC 3 cut(s) 312, 315, 426
SstI GAGCTC 1 cut(s) 632
StyD4I CCNGG 5 cut(s) 17, 83, 153, 212, 287
TaqI TCGA 3 cut(s) 195, 561, 825
TasI AATT 2 cut(s) 265, 820
TauI GCSGC 2 cut(s) 315, 429
TfiI GAWTC 3 cut(s) 113, 143, 569
TscAI CASTG 3 cut(s) 472, 754, 790
TseFI GTSAC 3 cut(s) 4, 227, 521
TseI GCWGC 4 cut(s) 744, 850, 877, 1048
Tsp45I GTSAC 3 cut(s) 4, 227, 521
TspGWI ACGGA 1 cut(s) 43
TspRI CASTG 3 cut(s) 472, 754, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.