Rw5G030530
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000418
Physical Location & Seq
Forward (+)
48516122 .. 48516937
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030530.1

Sequence Viewer

Length: 816 bp
ATGGCAATTCTCTCCAACAAACTCCCAGTCGGGCTCAGATTCCATCCCACGGACCACGAACTCGTGGATTACTATCTCCGCACCAGGATTGCCATGGGTGACCACTTTCACTCCGATTTCGTCGCCGATTGTCCTCATTTTTACGGAGACAATGAGCCCTGGGTTGTCTGGAAAATCTACGGCGGCGGTGACTCCAAGAAAGTGGAGGATGAAAAGACCCTCTACTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCGCCAAGCGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGCGGTCAGTATGCGAGAGAAATTGAGGATGATGGTGTTGTTATTGGGCTCAAGAGGGACTTCCGATACGAGGGCGGTTGTGATTCTCGTCACAACGAGGCTTGGCTGATGCAAGAGTTTCAGCTCATTGATGATCATTCTGATTTTGTACTGTGCAGTTTGAGAAAGAACCCTAGAAAGGCACCACCAACCCCAACTGCTCAGGGGAGCATTGTTGTTGAAAATACCAGAGTAGTTAATGATAAAAAGAGAAAGAGCATTGTGGATCCCAGAAAGCCAAAATCGAAAAAGCAGAAGAAGGAAGGGAGTTGTCATCAGGAAGAAGGCAGCAGTACTCTTCATCCCAATTACGAGTTGCCCTATCCACAAATGGATGATCTAGATTTTTATGTTCCTGAGATTTATCCAGAGCTGTTTGTTGATGATGAGTGTGATTTATTTACTATGGATGAATTACTTGGACAGAGTTGGGAGGAGGGCAACAACTTCAATTTGGTTACAGGAGTACCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

271

Amino Acids

31.36

Weight (kDa)

5.6

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 141 4.5e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccBSI CCGCTC 1 cut(s) 300
AciI CCGC 6 cut(s) 79, 183, 186, 258, 300, 372
AclWI GGATC 2 cut(s) 557, 570
AfaI GTAC 3 cut(s) 447, 631, 804
AfiI CCNNNNNNNGG 4 cut(s) 49, 294, 367, 475
AgsI TTSAA 2 cut(s) 518, 787
AjnI CCWGG 2 cut(s) 83, 158
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 2 cut(s) 421, 709
AluI AGCT 2 cut(s) 421, 709
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 557, 570
ApeKI GCWGC 1 cut(s) 624
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 110, 200, 223
AvaII GGWCC 1 cut(s) 52
BaeI ACNNNNGTAYC 1 cut(s) 786
BamHI GGATCC 1 cut(s) 562
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 3 cut(s) 36, 159, 348
BauI CACGAG 1 cut(s) 62
BbvI GCAGC 1 cut(s) 636
BccI CCATC 3 cut(s) 51, 243, 323
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 85, 160
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 471, 677
BisI GCNGC 2 cut(s) 184, 625
BlsI GCNGC 2 cut(s) 185, 626
BmcAI AGTACT 1 cut(s) 631
Bme1390I CCNGG 2 cut(s) 85, 160
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 286, 480, 564
BmrFI CCNGG 2 cut(s) 85, 160
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 48, 93, 158, 159
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 294, 367, 475
Bse1I ACTGG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 85, 160
BseDI CCNNGG 4 cut(s) 48, 93, 158, 159
BseGI GGATG 6 cut(s) 43, 214, 331, 637, 676, 751
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 4 cut(s) 49, 294, 367, 475
BseMII CTCAG 4 cut(s) 49, 239, 512, 684
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 785
BseXI GCAGC 1 cut(s) 636
BsgI GTGCAG 1 cut(s) 472
BshNI GGYRCC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 237, 368
BslI CCNNNNNNNGG 4 cut(s) 49, 294, 367, 475
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 237, 368
Bsp1286I GDGCHC 3 cut(s) 36, 159, 348
Bsp143I GATC 4 cut(s) 271, 430, 562, 673
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 79, 183, 186, 258, 300, 372
BspCNI CTCAG 4 cut(s) 48, 240, 511, 685
BspLI GGNNCC 3 cut(s) 286, 480, 564
BspPI GGATC 2 cut(s) 557, 570
BspT107I GGYRCC 1 cut(s) 478
BsrBI CCGCTC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 4 cut(s) 48, 93, 158, 159
BssMI GATC 4 cut(s) 271, 430, 562, 673
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 85, 160
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 639
BstDEI CTNAG 4 cut(s) 35, 248, 498, 693
BstDSI CCRYGG 2 cut(s) 48, 93
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 6 cut(s) 43, 214, 331, 637, 676, 751
BstKTI GATC 4 cut(s) 274, 433, 565, 676
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 4 cut(s) 271, 430, 562, 673
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 2 cut(s) 85, 160
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 83, 158
BstV1I GCAGC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 562
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 1 cut(s) 562
BtgI CCRYGG 2 cut(s) 48, 93
BtsCI GGATG 6 cut(s) 43, 214, 331, 637, 676, 751
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 3 cut(s) 446, 630, 803
CviAII CATG 1 cut(s) 94
CviJI RGCY 9 cut(s) 34, 157, 247, 346, 398, 403, 421, 574, 709
CviKI_1 RGCY 9 cut(s) 34, 157, 247, 346, 398, 403, 421, 574, 709
CviQI GTAC 3 cut(s) 446, 630, 803
DdeI CTNAG 4 cut(s) 35, 248, 498, 693
DpnI GATC 4 cut(s) 273, 432, 564, 675
DpnII GATC 4 cut(s) 271, 430, 562, 673
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 3 cut(s) 36, 159, 348
Eco47I GGWCC 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 83, 158
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 3 cut(s) 36, 159, 348
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 4 cut(s) 95, 309, 687, 743
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 2 cut(s) 237, 368
FatI CATG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 184, 625
FokI GGATG 6 cut(s) 30, 221, 338, 624, 683, 758
FriOI GRGCYC 3 cut(s) 36, 159, 348
Fsp4HI GCNGC 2 cut(s) 184, 625
FspBI CTAG 2 cut(s) 471, 677
GluI GCNGC 2 cut(s) 184, 625
HapII CCGG 1 cut(s) 288
Hin1II CATG 1 cut(s) 97
HinfI GANTC 4 cut(s) 39, 191, 250, 380
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 110, 200, 223
Hpy188I TCNGA 6 cut(s) 38, 115, 240, 276, 362, 439
Hpy188III TCNNGA 6 cut(s) 169, 349, 614, 677, 692, 704
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 237, 589, 593, 614
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4V TGCA 2 cut(s) 409, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 4 cut(s) 35, 248, 498, 693
Hsp92II CATG 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 271, 430, 562, 673
LmnI GCTCC 2 cut(s) 297, 504
Lsp1109I GCAGC 1 cut(s) 636
LweI GCATC 1 cut(s) 396
MaeI CTAG 2 cut(s) 471, 677
MaeIII GTNAC 4 cut(s) 98, 188, 386, 793
MalI GATC 4 cut(s) 273, 432, 564, 675
MbiI CCGCTC 1 cut(s) 300
MboI GATC 4 cut(s) 271, 430, 562, 673
MboII GAAGA 4 cut(s) 220, 604, 626, 629
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 3 cut(s) 36, 159, 348
MluCI AATT 5 cut(s) 6, 318, 643, 749, 787
MlyI GAGTC 2 cut(s) 185, 259
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 9 cut(s) 144, 199, 230, 316, 345, 361, 388, 763, 766
MseI TTAA 1 cut(s) 534
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 85, 160
MvaI CCWGG 2 cut(s) 85, 160
MwoI GCNNNNNNNGC 1 cut(s) 297
NcoI CCATGG 1 cut(s) 93
NdeII GATC 4 cut(s) 271, 430, 562, 673
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 286, 480, 564
NmuCI GTSAC 3 cut(s) 98, 188, 386
PasI CCCWGGG 1 cut(s) 159
PfeI GAWTC 2 cut(s) 39, 380
PkrI GCNGC 2 cut(s) 185, 626
PleI GAGTC 2 cut(s) 185, 258
PpsI GAGTC 2 cut(s) 185, 258
Psp6I CCWGG 2 cut(s) 83, 158
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 83, 158
PspN4I GGNNCC 3 cut(s) 286, 480, 564
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 3 cut(s) 447, 631, 804
RsaNI GTAC 3 cut(s) 446, 630, 803
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 2 cut(s) 184, 625
Sau3AI GATC 4 cut(s) 271, 430, 562, 673
Sau96I GGNCC 1 cut(s) 52
ScaI AGTACT 1 cut(s) 631
SchI GAGTC 2 cut(s) 185, 259
ScrFI CCNGG 2 cut(s) 85, 160
SduI GDGCHC 3 cut(s) 36, 159, 348
SetI ASST 2 cut(s) 423, 711
SfaNI GCATC 1 cut(s) 396
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 5 cut(s) 6, 318, 643, 749, 787
SsiI CCGC 6 cut(s) 79, 183, 186, 258, 300, 372
SspMI CTAG 2 cut(s) 471, 677
StyD4I CCNGG 2 cut(s) 83, 158
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 450
TaqI TCGA 1 cut(s) 581
TasI AATT 5 cut(s) 6, 318, 643, 749, 787
TatI WGTACW 2 cut(s) 445, 629
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 2 cut(s) 39, 380
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 3 cut(s) 98, 188, 386
TseI GCWGC 1 cut(s) 624
Tsp45I GTSAC 3 cut(s) 98, 188, 386
TspDTI ATGAA 3 cut(s) 225, 626, 762
TspGWI ACGGA 2 cut(s) 65, 159
VpaK11BI GGWCC 1 cut(s) 52
XbaI TCTAGA 1 cut(s) 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 2 cut(s) 471, 677
ZrmI AGTACT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.