RLG00000001184

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000418
Physical Location & Seq
Reverse (-)
11500360 .. 11500953
594 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001184

Sequence Viewer

Length: 594 bp
ATGGAATTTGGTTTTCCAGTGGGTGTGAGATTTCATCCTACTGACCGGGAGCTGGTGGGTCACTTCCTCCACAACAGAGCTGTTATGGGTGACCAGTTCCAGACCAAATCCATCTCCGATTGTCCTGATTTTTATGGTCAAAACGAGCCTTGGGTTATTTGGGCCTTGTATGGTGGGAATAAATCTAGAAATGTGGAGGCTCTCTATTTCTTCACACATCGCAACAAGTTGAATCCCACCGCTGAGTGCTTTGATCAGAAGGTGGGTTCCGGAACTTGGAGGGAGCAGCACTCGGAAGATGTTGTTGCCAAGGATGACAGTGTTATGGGAATCAGTCGACATTTTCGGTATGAGGGTGGATGTGATTCTTATAAGAATGGGGCTTGGTTGATGCAAGAGTACCAGATCGGGACTGCTACTCACAACAATGGTGCTACTGATCAAGAACTTGTACTCTGCACCTTGAGGAAGAACCCTGAAAAACTACCACTACCAACAACAACAGCTACTGCAAAGAATGGTAATGATGTAGAGGATTATTGTTCAAGGTCATCAACCAAGCTAGAAACCCGAGGAGCAGAGAGAGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

198

Amino Acids

22.35

Weight (kDa)

5.8

Isoelectric Point (pI)

31.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 136 1.4e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccI GTMKAC 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 5
AfaI GTAC 2 cut(s) 401, 453
AfiI CCNNNNNNNGG 2 cut(s) 52, 276
AgsI TTSAA 2 cut(s) 232, 546
AluBI AGCT 4 cut(s) 52, 80, 506, 562
AluI AGCT 4 cut(s) 52, 80, 506, 562
Alw26I GTCTC 1 cut(s) 579
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 570
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 570
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 119
BclI TGATCA 2 cut(s) 253, 439
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 579
BfaI CTAG 2 cut(s) 186, 563
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpuEI CTTGAG 1 cut(s) 484
BpuMI CCSGG 1 cut(s) 47
BsaJI CCNNGG 3 cut(s) 149, 309, 571
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 276
Bse1I ACTGG 2 cut(s) 17, 94
BseAI TCCGGA 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 149, 309, 571
BseGI GGATG 3 cut(s) 34, 319, 365
BseLI CCNNNNNNNGG 2 cut(s) 52, 276
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 17, 94
BseRI GAGGAG 1 cut(s) 588
BseXI GCAGC 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 442
BshFI GGCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 2 cut(s) 46, 270
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 2 cut(s) 52, 276
BsmAI GTCTC 1 cut(s) 579
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 570
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 3 cut(s) 253, 405, 439
BspACI CCGC 1 cut(s) 240
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 268
BsrI ACTGG 2 cut(s) 17, 94
BssECI CCNNGG 3 cut(s) 149, 309, 571
BssMI GATC 3 cut(s) 253, 405, 439
BssT1I CCWWGG 2 cut(s) 149, 309
Bst4CI ACNGT 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 3 cut(s) 34, 319, 365
BstKTI GATC 3 cut(s) 256, 408, 442
BstMAI GTCTC 1 cut(s) 579
BstMBI GATC 3 cut(s) 253, 405, 439
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 3 cut(s) 34, 319, 365
BtsIMutI CAGTG 2 cut(s) 24, 325
CaiI CAGNNNCTG 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 400, 452
CviJI RGCY 8 cut(s) 52, 80, 148, 164, 200, 383, 506, 562
CviKI_1 RGCY 8 cut(s) 52, 80, 148, 164, 200, 383, 506, 562
CviQI GTAC 2 cut(s) 400, 452
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 255, 407, 441
DpnII GATC 3 cut(s) 253, 405, 439
Eco130I CCWWGG 2 cut(s) 149, 309
Eco88I CYCGRG 1 cut(s) 570
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoT14I CCWWGG 2 cut(s) 149, 309
ErhI CCWWGG 2 cut(s) 149, 309
FaiI YATR 6 cut(s) 86, 135, 171, 326, 351, 372
FaqI GGGAC 1 cut(s) 424
FbaI TGATCA 2 cut(s) 253, 439
FblI GTMKAC 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 3 cut(s) 21, 326, 372
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 2 cut(s) 186, 563
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 1 cut(s) 164
HapII CCGG 2 cut(s) 46, 270
HincII GTYRAC 1 cut(s) 338
HindII GTYRAC 1 cut(s) 338
HinfI GANTC 3 cut(s) 232, 330, 365
HpaII CCGG 2 cut(s) 46, 270
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 3 cut(s) 118, 258, 295
Hpy188III TCNNGA 6 cut(s) 100, 125, 186, 270, 409, 443
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 394, 459, 512
HpyF3I CTNAG 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 253, 439
Kzo9I GATC 3 cut(s) 253, 405, 439
LmnI GCTCC 3 cut(s) 49, 283, 575
LpnPI CCDG 9 cut(s) 30, 38, 59, 107, 113, 138, 283, 416, 489
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 381
MaeI CTAG 2 cut(s) 186, 563
MaeIII GTNAC 2 cut(s) 59, 89
MalI GATC 3 cut(s) 255, 407, 441
MboI GATC 3 cut(s) 253, 405, 439
MboII GAAGA 3 cut(s) 202, 308, 481
MluCI AATT 1 cut(s) 5
MnlI CCTC 7 cut(s) 77, 190, 273, 346, 459, 526, 566
MroI TCCGGA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 46, 270
MspR9I CCNGG 1 cut(s) 47
NciI CCSGG 1 cut(s) 47
NdeII GATC 3 cut(s) 253, 405, 439
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 59, 89
PfeI GAWTC 3 cut(s) 232, 330, 365
PkrI GCNGC 1 cut(s) 288
PsiI TTATAA 1 cut(s) 372
PspEI GGTNACC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 401, 453
RsaNI GTAC 2 cut(s) 400, 452
RseI CAYNNNNRTG 1 cut(s) 426
SalI GTCGAC 1 cut(s) 336
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 253, 405, 439
Sau96I GGNCC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 47
SetI ASST 7 cut(s) 54, 82, 264, 464, 508, 551, 564
SfaNI GCATC 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 240
SspMI CTAG 2 cut(s) 186, 563
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 2 cut(s) 149, 309
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 337
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 451
TfiI GAWTC 3 cut(s) 232, 330, 365
TscAI CASTG 2 cut(s) 24, 325
TseFI GTSAC 2 cut(s) 59, 89
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 2 cut(s) 59, 89
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 2 cut(s) 24, 325
XapI RAATTY 1 cut(s) 5
XbaI TCTAGA 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 337
XspI CTAG 2 cut(s) 186, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.