Rorug01G0112200

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000418
Physical Location & Seq
Forward (+)
19959798 .. 19964747
4950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0112200.1

Sequence Viewer

Length: 1215 bp
ATGTCAGGATTAGCCCTAGAAATTGTTGAACACAAACTAGTGGGAGGTGAAACTCAGAGTGATGAAAATCCTGATTCCGTTGATCGCAGCAGAGCAACTTCACCACCGGGAGCGCAACAACCAGCCAAGGCAAACTTCCAGGTGGGTGCCAATATAATAAACAACTGCCAGCGTGGATCTATCTATCACATCATCCCAGCCCATCTTTTCTTCTGCTATTTCCAATCAAAACCCGTTTCAGAGAGAGTCGAGCAGACAGGCCAATTCGGATTTGAGTTTCGAATCTCAAAACTCTTGCTTGCTTCTCAGACCATCATCGCCATTGTTGAAGATCCACCTCCCAGGTCCACTTCCCTTCCCTCTAACTCATGTGTGTGTGTGTCTGTAAATATAGCTTCAGTTTTATTTATATTGAATCGTTCTTCGTCGATGGAGTGTGATATTTCTGATGTTGAGATTAAGTTTCGACTAGGGTTAAGTAGAAAATTAGAGGCAGGAAACAGTAGAAAAGAACCGGGCCGAAGTGCGCACTTCAAAATTTCCAATCTCAGGATTGGTCCTTTAATTGGAATAGTTTTGGCTGCTAGAGTCTTCAATATTTTGTTACCTCCACCAGAAACAAAGGAGAAGAAATGGTCTGAGATGGATGCATCGATGAATGCAAATGCTGGGATTGGTGGGAGTGGTGGCAATGGGATATTGGTCCCTCAAACCAATGATACAGCAGGAACAACAGGGGTGGATGATCCAAAGCAAGACCTGAACCAGGTCATTAACTCTATTCAGAAGACTTTAGGGCTCATTCACCAGCTCTACCTCACTGTCTCTTCGTTCAATGCCGGCTCTCAGCTCCCCCTCCTCCAGCGCCTAAATGCTCTTGTTATGGAGCTTGACAATATGGCTAAGTTGTCTGACAAATGCAATATCCAGGTTCCTATGGAGGTTTTTAATTTGATTGACGATGGAAAGAATCCTGATGAATTTACAAGGGATGTCATAAACAGCTGTATCGCCAAAAATCAGATCACTAAAGGCAAAACTGATACCTTCAAGAGTTTGCGCAAACATCTTCTCGACGAACTTGAACAGGCATTTCCTGATGAAGTTGAATCATATAGAGAAATACGTGCTGCTTCAGCTGCTGAAATGAAACGACTTGCACAAGCACAAAGCACATTGCCAAATGGAGATGTGAAGGTCAAACCCGAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

404

Amino Acids

44.19

Weight (kDa)

6.14

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med10 PF09748 260 - 373 8.2e-34 Transcription factor subunit Med10 of Mediator complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 528, 1061
AccB1I GGYRCC 1 cut(s) 146
AclWI GGATC 3 cut(s) 184, 326, 740
AcsI RAATTY 2 cut(s) 537, 980
AcuI CTGAAG 2 cut(s) 381, 1119
AfiI CCNNNNNNNGG 3 cut(s) 549, 566, 766
AgsI TTSAA 9 cut(s) 29, 329, 415, 535, 595, 835, 1051, 1085, 1109
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 4 cut(s) 138, 341, 765, 927
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 6 cut(s) 395, 811, 850, 889, 1005, 1139
AluI AGCT 6 cut(s) 395, 811, 850, 889, 1005, 1139
Alw26I GTCTC 1 cut(s) 829
AlwI GGATC 3 cut(s) 184, 326, 740
AlwNI CAGNNNCTG 1 cut(s) 1142
Ama87I CYCGRG 1 cut(s) 1205
AoxI GGCC 2 cut(s) 259, 517
ApeKI GCWGC 4 cut(s) 87, 581, 1130, 1139
ApoI RAATTY 2 cut(s) 537, 980
AspLEI GCGC 4 cut(s) 115, 529, 867, 1062
AspS9I GGNCC 4 cut(s) 345, 517, 557, 703
AsuC2I CCSGG 2 cut(s) 108, 516
AsuHPI GGTGA 3 cut(s) 59, 93, 797
AsuII TTCGAA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 1205
AvaII GGWCC 3 cut(s) 345, 557, 703
BaeI ACNNNNGTAYC 2 cut(s) 991, 1024
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 801
BbsI GAAGAC 2 cut(s) 583, 794
BbvI GCAGC 4 cut(s) 99, 568, 1117, 1126
BccI CCATC 5 cut(s) 210, 320, 424, 637, 956
BciT130I CCWGG 4 cut(s) 140, 343, 767, 929
BcnI CCSGG 2 cut(s) 108, 516
BcoDI GTCTC 1 cut(s) 829
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 4 cut(s) 17, 38, 470, 585
BfoI RGCGCY 1 cut(s) 868
BisI GCNGC 4 cut(s) 88, 582, 1131, 1140
BlsI GCNGC 4 cut(s) 89, 583, 1132, 1141
Bme1390I CCNGG 6 cut(s) 108, 140, 343, 516, 767, 929
Bme18I GGWCC 3 cut(s) 345, 557, 703
BmeT110I CYCGRG 1 cut(s) 1205
BmgT120I GGNCC 4 cut(s) 345, 517, 557, 703
BmiI GGNNCC 3 cut(s) 148, 705, 933
BmrFI CCNGG 6 cut(s) 108, 140, 343, 516, 767, 929
BmsI GCATC 2 cut(s) 637, 659
BpiI GAAGAC 2 cut(s) 583, 794
BpmI CTGGAG 1 cut(s) 845
Bpu14I TTCGAA 1 cut(s) 280
BpuMI CCSGG 2 cut(s) 108, 516
Bsa29I ATCGAT 1 cut(s) 653
BsaAI YACGTR 1 cut(s) 1127
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 126, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 549, 566, 766
Bse118I RCCGGY 1 cut(s) 839
Bse3DI GCAATG 2 cut(s) 697, 1175
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 4 cut(s) 140, 343, 767, 929
BseCI ATCGAT 1 cut(s) 653
BseDI CCNNGG 2 cut(s) 126, 341
BseGI GGATG 4 cut(s) 192, 652, 748, 997
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 3 cut(s) 549, 566, 766
BseMI GCAATG 2 cut(s) 697, 1175
BseMII CTCAG 5 cut(s) 68, 320, 562, 630, 860
BseRI GAGGAG 1 cut(s) 848
BseXI GCAGC 4 cut(s) 99, 568, 1117, 1126
BseYI CCCAGC 2 cut(s) 196, 668
BshFI GGCC 2 cut(s) 261, 519
BshNI GGYRCC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 653
BsiHKCI CYCGRG 1 cut(s) 1205
BsiSI CCGG 3 cut(s) 107, 515, 840
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 3 cut(s) 549, 566, 766
BsmAI GTCTC 1 cut(s) 829
BsmFI GGGAC 1 cut(s) 689
BsmI GAATGC 1 cut(s) 664
BsnI GGCC 2 cut(s) 261, 519
BsoBI CYCGRG 1 cut(s) 1205
Bsp119I TTCGAA 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 801
Bsp143I GATC 5 cut(s) 82, 176, 331, 745, 1023
BspANI GGCC 2 cut(s) 261, 519
BspCNI CTCAG 5 cut(s) 67, 319, 561, 631, 859
BspDI ATCGAT 1 cut(s) 653
BspLI GGNNCC 3 cut(s) 148, 705, 933
BspPI GGATC 3 cut(s) 184, 326, 740
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 697, 1175
BsrFI RCCGGY 1 cut(s) 839
BssAI RCCGGY 1 cut(s) 839
BssECI CCNNGG 2 cut(s) 126, 341
BssMI GATC 5 cut(s) 82, 176, 331, 745, 1023
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 4 cut(s) 140, 343, 767, 929
Bst4CI ACNGT 2 cut(s) 503, 823
Bst6I CTCTTC 1 cut(s) 832
BstBAI YACGTR 1 cut(s) 1127
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 170, 300, 841
BstDEI CTNAG 6 cut(s) 54, 306, 548, 639, 846, 903
BstENI CCTNNNNNAGG 1 cut(s) 764
BstF5I GGATG 4 cut(s) 192, 652, 748, 997
BstH2I RGCGCY 1 cut(s) 868
BstHHI GCGC 4 cut(s) 115, 529, 867, 1062
BstKTI GATC 5 cut(s) 85, 179, 334, 748, 1026
BstMAI GTCTC 1 cut(s) 829
BstMBI GATC 5 cut(s) 82, 176, 331, 745, 1023
BstMWI GCNNNNNNNGC 2 cut(s) 1136, 1139
BstNI CCWGG 4 cut(s) 140, 343, 767, 929
BstSCI CCNGG 6 cut(s) 106, 138, 341, 514, 765, 927
BstV1I GCAGC 4 cut(s) 99, 568, 1117, 1126
BstV2I GAAGAC 2 cut(s) 583, 794
BstX2I RGATCY 2 cut(s) 176, 331
BstYI RGATCY 2 cut(s) 176, 331
Bsu15I ATCGAT 1 cut(s) 653
BsuRI GGCC 2 cut(s) 261, 519
BsuTUI ATCGAT 1 cut(s) 653
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 4 cut(s) 192, 652, 748, 997
BtsIMutI CAGTG 1 cut(s) 819
Cac8I GCNNGC 3 cut(s) 170, 300, 841
CaiI CAGNNNCTG 1 cut(s) 1142
CfoI GCGC 4 cut(s) 115, 529, 867, 1062
Cfr10I RCCGGY 1 cut(s) 839
Cfr13I GGNCC 4 cut(s) 345, 517, 557, 703
ClaI ATCGAT 1 cut(s) 653
CsiI ACCWGGT 1 cut(s) 765
CspCI CAANNNNNGTGG 2 cut(s) 720, 755
CviAII CATG 1 cut(s) 369
DdeI CTNAG 6 cut(s) 54, 306, 548, 639, 846, 903
DpnI GATC 5 cut(s) 84, 178, 333, 747, 1025
DpnII GATC 5 cut(s) 82, 176, 331, 745, 1023
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 801
Eco47I GGWCC 3 cut(s) 345, 557, 703
Eco57I CTGAAG 2 cut(s) 381, 1119
Eco88I CYCGRG 1 cut(s) 1205
EcoNI CCTNNNNNAGG 1 cut(s) 764
EcoRII CCWGG 4 cut(s) 138, 341, 765, 927
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 652
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 372
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 689
FatI CATG 1 cut(s) 368
Fnu4HI GCNGC 4 cut(s) 88, 582, 1131, 1140
FokI GGATG 4 cut(s) 179, 659, 755, 1004
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 4 cut(s) 88, 582, 1131, 1140
FspAI RTGCGCAY 1 cut(s) 528
FspBI CTAG 4 cut(s) 17, 38, 470, 585
FspI TGCGCA 2 cut(s) 528, 1061
GlaI GCGC 4 cut(s) 114, 528, 866, 1061
GluI GCNGC 4 cut(s) 88, 582, 1131, 1140
GsaI CCCAGC 2 cut(s) 200, 672
GsuI CTGGAG 1 cut(s) 845
HaeII RGCGCY 1 cut(s) 868
HaeIII GGCC 2 cut(s) 261, 519
HapII CCGG 3 cut(s) 107, 515, 840
HhaI GCGC 4 cut(s) 115, 529, 867, 1062
Hin1II CATG 1 cut(s) 372
Hin6I GCGC 4 cut(s) 113, 527, 865, 1060
HinP1I GCGC 4 cut(s) 113, 527, 865, 1060
HinfI GANTC 7 cut(s) 74, 246, 282, 415, 588, 970, 1109
HpaII CCGG 3 cut(s) 107, 515, 840
HphI GGTGA 3 cut(s) 59, 93, 797
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 9 cut(s) 57, 241, 269, 309, 448, 640, 786, 913, 1023
Hpy188III TCNNGA 7 cut(s) 6, 71, 550, 974, 1051, 1073, 1097
Hpy8I GTNNAC 1 cut(s) 348
Hpy99I CGWCG 2 cut(s) 430, 1079
HpyAV CCTTC 3 cut(s) 365, 1057, 1189
HpyCH4III ACNGT 2 cut(s) 503, 823
HpyCH4IV ACGT 1 cut(s) 1126
HpyCH4V TGCA 4 cut(s) 650, 662, 921, 1160
HpyF10VI GCNNNNNNNGC 2 cut(s) 1136, 1139
HpyF3I CTNAG 6 cut(s) 54, 306, 548, 639, 846, 903
HpySE526I ACGT 1 cut(s) 1126
Hsp92II CATG 1 cut(s) 372
HspAI GCGC 4 cut(s) 113, 527, 865, 1060
KroI GCCGGC 1 cut(s) 839
KroNI GCCGGC 1 cut(s) 841
Kzo9I GATC 5 cut(s) 82, 176, 331, 745, 1023
LmnI GCTCC 3 cut(s) 110, 855, 886
Lsp1109I GCAGC 4 cut(s) 99, 568, 1117, 1126
LweI GCATC 2 cut(s) 637, 659
MabI ACCWGGT 1 cut(s) 765
MaeI CTAG 4 cut(s) 17, 38, 470, 585
MaeII ACGT 1 cut(s) 1126
MaeIII GTNAC 1 cut(s) 603
MalI GATC 5 cut(s) 84, 178, 333, 747, 1025
MboI GATC 5 cut(s) 82, 176, 331, 745, 1023
MboII GAAGA 8 cut(s) 202, 341, 414, 583, 640, 799, 819, 1061
MflI RGATCY 2 cut(s) 176, 331
MhlI GDGCHC 1 cut(s) 801
MluCI AATT 7 cut(s) 21, 263, 485, 537, 564, 949, 980
MlyI GAGTC 2 cut(s) 255, 597
Mph1103I ATGCAT 1 cut(s) 652
MroNI GCCGGC 1 cut(s) 839
MseI TTAA 6 cut(s) 459, 476, 563, 774, 948, 1213
MslI CAYNNNNRTG 1 cut(s) 373
MspA1I CMGCKG 2 cut(s) 1005, 1139
MspI CCGG 3 cut(s) 107, 515, 840
MspR9I CCNGG 6 cut(s) 108, 140, 343, 516, 767, 929
Mva1269I GAATGC 1 cut(s) 664
MvaI CCWGG 4 cut(s) 140, 343, 767, 929
MwoI GCNNNNNNNGC 2 cut(s) 1136, 1139
NaeI GCCGGC 1 cut(s) 841
NciI CCSGG 2 cut(s) 108, 516
NdeII GATC 5 cut(s) 82, 176, 331, 745, 1023
NgoMIV GCCGGC 1 cut(s) 839
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 3 cut(s) 148, 705, 933
NsbI TGCGCA 2 cut(s) 528, 1061
NsiI ATGCAT 1 cut(s) 652
NspV TTCGAA 1 cut(s) 280
PctI GAATGC 1 cut(s) 664
PdiI GCCGGC 1 cut(s) 841
PfeI GAWTC 5 cut(s) 74, 282, 415, 970, 1109
PkrI GCNGC 4 cut(s) 89, 583, 1132, 1141
PleI GAGTC 2 cut(s) 254, 596
PpsI GAGTC 2 cut(s) 254, 596
Ppu21I YACGTR 1 cut(s) 1127
Psp6I CCWGG 4 cut(s) 138, 341, 765, 927
PspFI CCCAGC 2 cut(s) 196, 668
PspGI CCWGG 4 cut(s) 138, 341, 765, 927
PspN4I GGNNCC 3 cut(s) 148, 705, 933
PspPI GGNCC 4 cut(s) 345, 517, 557, 703
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 2 cut(s) 176, 331
PvuII CAGCTG 2 cut(s) 1005, 1139
RseI CAYNNNNRTG 1 cut(s) 373
SaqAI TTAA 6 cut(s) 459, 476, 563, 774, 948, 1213
SatI GCNGC 4 cut(s) 88, 582, 1131, 1140
Sau3AI GATC 5 cut(s) 82, 176, 331, 745, 1023
Sau96I GGNCC 4 cut(s) 345, 517, 557, 703
SchI GAGTC 2 cut(s) 255, 597
ScrFI CCNGG 6 cut(s) 108, 140, 343, 516, 767, 929
SduI GDGCHC 1 cut(s) 801
SexAI ACCWGGT 1 cut(s) 765
SfaNI GCATC 2 cut(s) 637, 659
SfuI TTCGAA 1 cut(s) 280
SinI GGWCC 3 cut(s) 345, 557, 703
SmiMI CAYNNNNRTG 1 cut(s) 373
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 7 cut(s) 21, 263, 485, 537, 564, 949, 980
SspI AATATT 1 cut(s) 598
SspMI CTAG 4 cut(s) 17, 38, 470, 585
StyD4I CCNGG 6 cut(s) 106, 138, 341, 514, 765, 927
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 503, 823
TaiI ACGT 1 cut(s) 1129
TaqI TCGA 6 cut(s) 249, 280, 428, 466, 653, 1074
TasI AATT 7 cut(s) 21, 263, 485, 537, 564, 949, 980
TfiI GAWTC 5 cut(s) 74, 282, 415, 970, 1109
Tru1I TTAA 6 cut(s) 459, 476, 563, 774, 948, 1213
Tru9I TTAA 6 cut(s) 459, 476, 563, 774, 948, 1213
TscAI CASTG 1 cut(s) 826
TseI GCWGC 4 cut(s) 87, 581, 1130, 1139
TspDTI ATGAA 5 cut(s) 78, 671, 993, 1116, 1163
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 826
VpaK11BI GGWCC 3 cut(s) 345, 557, 703
XagI CCTNNNNNAGG 1 cut(s) 764
XapI RAATTY 2 cut(s) 537, 980
XspI CTAG 4 cut(s) 17, 38, 470, 585
Zsp2I ATGCAT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.