Rroxscaffold_6G00424920
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000418
Physical Location & Seq
Reverse (-)
46001652 .. 46002650
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424920.1

Sequence Viewer

Length: 999 bp
ATGCAAAGGTATCCGAAGGGCATGAGGTTTCATCCTACAGACTTGGAACTCGTTGATTATTTCCTCCACAACAAGGCCGATGCTGATGAGAAGGGTTGTTACTCCAGCTTAATCTATGAATGTAATGATTTTTATGGTGAAAAAGAGCCGTGGGTTATTTGGGACATATATGGGGGTTCTACATATGAGGAAGGAGAACCCCTCTACTTCTACACCAAGCGCATCAAACAGAATAGTAATGGCAAACGCTTTGCTCGGAAGGTAGGCTCCGGTACATGGAGTGGAGAGTACTCGAAAGAGGTTCTTGCTGCCGATGATGGTAAAACCAAAATTGGGACAATGAGGAACTTTCGCTACGAGAAGGGATGTGATTCTGGTCAAAACGGTGCATGGCTCATGCACGAGTACGAGAGTGAGTTCGACAAGAACGGGGAAGATGATTATGTAATTTGCGTTTTGAGAAAAAATCCAAGAAAAGCTCCAGCACTACTACAACCTGATCAGAGAGATATTGAAAGTACAAAGAAGAGAAGTGTCAATGACAAAAAGAGAAAGAGGATGACGTCGGACGACGTTGTTGATCATCAAGATCATCAACAGAGAAAGCTGAAAAAGCAACTAAAGGATGATCGTGAACTGATAAAGATCGAAGAGGAAGAAAGAAAGGAAGAGAGTTACGACGAACAAGGCCGTAGCAGTTGTACGCAGCTGCCCTATCATCATGATCAAGATAATAATACTTATTATCCTGATAATCATAATTTTTATTCGGATTATTATTTTCCAGAGCTCCTTGGCAATAATTATGATGATGGTGTCACTATAGACGAACTCATTGGACCAATTTCAGATGATTCTGTATACTACAAGTCCATCCCATTTCAGGATCAGTTTTATCACGGCGACGATGACAGCTTCAACTTCGTAGATTACTCGGATGGAGGGGTGTCACAGCTGCCTAACGATCAACACACTGTTGATTACCTGGGGAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

332

Amino Acids

38.98

Weight (kDa)

4.9

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 137 2.7e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 861
AclWI GGATC 1 cut(s) 894
AcyI GRCGYC 1 cut(s) 563
AfaI GTAC 5 cut(s) 274, 290, 407, 520, 703
AfiI CCNNNNNNNGG 4 cut(s) 73, 276, 333, 883
AgsI TTSAA 2 cut(s) 515, 919
AjnI CCWGG 1 cut(s) 984
AluBI AGCT 7 cut(s) 108, 479, 607, 709, 790, 915, 955
AluI AGCT 7 cut(s) 108, 479, 607, 709, 790, 915, 955
Alw21I GWGCWC 1 cut(s) 792
AlwI GGATC 1 cut(s) 894
AoxI GGCC 2 cut(s) 75, 688
ApeKI GCWGC 4 cut(s) 308, 706, 709, 955
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 839
BanII GRGCYC 1 cut(s) 792
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BauI CACGAG 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 792
BbvI GCAGC 4 cut(s) 295, 696, 718, 942
BccI CCATC 4 cut(s) 311, 806, 881, 932
BceAI ACGGC 3 cut(s) 133, 675, 916
BciT130I CCWGG 1 cut(s) 986
BciVI GTATCC 1 cut(s) 21
BclI TGATCA 3 cut(s) 499, 580, 724
BfmI CTRYAG 2 cut(s) 36, 822
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 4 cut(s) 309, 707, 710, 956
BlsI GCNGC 4 cut(s) 310, 708, 711, 957
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 986
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 986
BmsI GCATC 2 cut(s) 70, 231
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 2 cut(s) 88, 465
BsaBI GATNNNNATC 1 cut(s) 644
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 149, 793, 985
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 276, 333, 883
Bse8I GATNNNNATC 1 cut(s) 644
BseBI CCWGG 1 cut(s) 986
BseDI CCNNGG 3 cut(s) 149, 793, 985
BseGI GGATG 6 cut(s) 31, 371, 564, 631, 873, 943
BseJI GATNNNNATC 1 cut(s) 644
BseLI CCNNNNNNNGG 4 cut(s) 73, 276, 333, 883
BseXI GCAGC 4 cut(s) 295, 696, 718, 942
BshFI GGCC 2 cut(s) 77, 690
BsiHKAI GWGCWC 1 cut(s) 792
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 2 cut(s) 176, 349
BslI CCNNNNNNNGG 4 cut(s) 73, 276, 333, 883
BsmFI GGGAC 2 cut(s) 176, 349
BsnI GGCC 2 cut(s) 77, 690
Bsp1286I GDGCHC 1 cut(s) 792
Bsp143I GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
BspANI GGCC 2 cut(s) 77, 690
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 1 cut(s) 894
BssECI CCNNGG 3 cut(s) 149, 793, 985
BssMI GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
BssNAI GTATAC 1 cut(s) 862
BssNI GRCGYC 1 cut(s) 563
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 793
Bst1107I GTATAC 1 cut(s) 862
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 986
Bst4CI ACNGT 2 cut(s) 386, 976
Bst6I CTCTTC 3 cut(s) 521, 645, 663
BstACI GRCGYC 1 cut(s) 563
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 6 cut(s) 31, 371, 564, 631, 873, 943
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 8 cut(s) 502, 583, 592, 631, 648, 727, 889, 967
BstMBI GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
BstMWI GCNNNNNNNGC 1 cut(s) 613
BstNI CCWGG 1 cut(s) 986
BstSCI CCNGG 1 cut(s) 984
BstSFI CTRYAG 2 cut(s) 36, 822
BstV1I GCAGC 4 cut(s) 295, 696, 718, 942
BstZ17I GTATAC 1 cut(s) 862
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 2 cut(s) 77, 690
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 6 cut(s) 31, 371, 564, 631, 873, 943
BtsIMutI CAGTG 1 cut(s) 972
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 5 cut(s) 273, 289, 406, 519, 702
CviAII CATG 5 cut(s) 22, 276, 390, 397, 722
CviQI GTAC 5 cut(s) 273, 289, 406, 519, 702
DpnI GATC 8 cut(s) 501, 582, 591, 630, 647, 726, 888, 966
DpnII GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
Eam1104I CTCTTC 3 cut(s) 521, 645, 663
EarI CTCTTC 3 cut(s) 521, 645, 663
Ecl136II GAGCTC 1 cut(s) 790
Eco130I CCWWGG 1 cut(s) 793
Eco24I GRGCYC 1 cut(s) 792
Eco47I GGWCC 1 cut(s) 839
Eco53kI GAGCTC 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 790
EcoRII CCWGG 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 792
ErhI CCWWGG 1 cut(s) 793
FaeI CATG 5 cut(s) 25, 279, 393, 400, 725
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 2 cut(s) 176, 349
FatI CATG 5 cut(s) 21, 275, 389, 396, 721
FauNDI CATATG 1 cut(s) 184
FbaI TGATCA 3 cut(s) 499, 580, 724
FblI GTMKAC 1 cut(s) 861
Fnu4HI GCNGC 4 cut(s) 309, 707, 710, 956
FokI GGATG 6 cut(s) 18, 378, 571, 638, 860, 950
FriOI GRGCYC 1 cut(s) 792
Fsp4HI GCNGC 4 cut(s) 309, 707, 710, 956
GlaI GCGC 1 cut(s) 221
GluI GCNGC 4 cut(s) 309, 707, 710, 956
GsuI CTGGAG 2 cut(s) 88, 465
HaeIII GGCC 2 cut(s) 77, 690
HapII CCGG 1 cut(s) 270
HhaI GCGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 5 cut(s) 25, 279, 393, 400, 725
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 2 cut(s) 371, 854
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 635, 862
Hpy188I TCNGA 7 cut(s) 15, 258, 504, 568, 772, 850, 937
Hpy188III TCNNGA 7 cut(s) 587, 632, 722, 728, 749, 785, 884
Hpy8I GTNNAC 2 cut(s) 635, 862
Hpy99I CGWCG 4 cut(s) 568, 575, 683, 908
HpyAV CCTTC 5 cut(s) 10, 85, 185, 253, 355
HpyCH4III ACNGT 2 cut(s) 386, 976
HpyCH4IV ACGT 2 cut(s) 563, 573
HpyCH4V TGCA 3 cut(s) 4, 389, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 613
HpySE526I ACGT 2 cut(s) 563, 573
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 5 cut(s) 25, 279, 393, 400, 725
HspAI GCGC 1 cut(s) 220
Ksp22I TGATCA 3 cut(s) 499, 580, 724
Kzo9I GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
LmnI GCTCC 3 cut(s) 272, 484, 795
LpnPI CCDG 9 cut(s) 118, 283, 360, 495, 510, 762, 798, 869, 971
Lsp1109I GCAGC 4 cut(s) 295, 696, 718, 942
LweI GCATC 2 cut(s) 70, 231
MaeII ACGT 2 cut(s) 563, 573
MaeIII GTNAC 4 cut(s) 98, 674, 817, 948
MalI GATC 8 cut(s) 501, 582, 591, 630, 647, 726, 888, 966
MboI GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
MboII GAAGA 5 cut(s) 446, 538, 662, 668, 680
MhlI GDGCHC 1 cut(s) 792
MluCI AATT 5 cut(s) 330, 447, 760, 802, 843
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 9 cut(s) 18, 74, 181, 212, 292, 336, 549, 646, 935
MseI TTAA 1 cut(s) 110
MspA1I CMGCKG 2 cut(s) 709, 955
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 986
MvaI CCWGG 1 cut(s) 986
MwoI GCNNNNNNNGC 1 cut(s) 613
NdeI CATATG 1 cut(s) 184
NdeII GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
NlaIII CATG 5 cut(s) 25, 279, 393, 400, 725
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 2 cut(s) 817, 948
PagI TCATGA 1 cut(s) 721
PfeI GAWTC 2 cut(s) 371, 854
PkrI GCNGC 4 cut(s) 310, 708, 711, 957
Psp124BI GAGCTC 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 984
PspGI CCWGG 1 cut(s) 984
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 839
PsrI GAACNNNNNNTAC 2 cut(s) 338, 370
PvuII CAGCTG 2 cut(s) 709, 955
RsaI GTAC 5 cut(s) 274, 290, 407, 520, 703
RsaNI GTAC 5 cut(s) 273, 289, 406, 519, 702
SacI GAGCTC 1 cut(s) 792
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 4 cut(s) 309, 707, 710, 956
Sau3AI GATC 8 cut(s) 499, 580, 589, 628, 645, 724, 886, 964
Sau96I GGNCC 1 cut(s) 839
ScaI AGTACT 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 986
SduI GDGCHC 1 cut(s) 792
SfaNI GCATC 2 cut(s) 70, 231
SfcI CTRYAG 2 cut(s) 36, 822
SinI GGWCC 1 cut(s) 839
Sse9I AATT 5 cut(s) 330, 447, 760, 802, 843
SstI GAGCTC 1 cut(s) 792
StyD4I CCNGG 1 cut(s) 984
StyI CCWWGG 1 cut(s) 793
TaaI ACNGT 2 cut(s) 386, 976
TaiI ACGT 2 cut(s) 566, 576
TaqI TCGA 3 cut(s) 293, 420, 648
TasI AATT 5 cut(s) 330, 447, 760, 802, 843
TatI WGTACW 2 cut(s) 288, 518
TfiI GAWTC 2 cut(s) 371, 854
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 979
TseFI GTSAC 2 cut(s) 817, 948
TseI GCWGC 4 cut(s) 308, 706, 709, 955
Tsp45I GTSAC 2 cut(s) 817, 948
TspDTI ATGAA 2 cut(s) 20, 132
TspRI CASTG 1 cut(s) 979
VpaK11BI GGWCC 1 cut(s) 839
XmiI GTMKAC 1 cut(s) 861
ZraI GACGTC 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.