Rmu_sc0007177.1_g000007

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007177.1
OG0000418
Physical Location & Seq
Forward (+)
51648 .. 52049
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007177.1_g000007.1.cds

Sequence Viewer

Length: 402 bp
atgttccatgcccaatccatcagtattatgaaggaggaggaggagcaacctctatatttcttcactcaccgcaagaaattgaatcccaaagcgaaaaaatttgataggaaagtgggatcgggaacatggagtgcccagtattcaaaaaatgttgttgctgctgatgatagtgttgttggaattaagagagaatttcggtatgagggtggatttgatccacatcaaaatggggcttggttgctgctgatgatagtgttgttgtttccctactattgtctcaacttcttttggtctaatgatcaaaagccaaccgtgcacctcctccaaacagttacatctccagaatcttatatgcaaggtttggcaactcttgtggtgattgtaaaaattatgccactgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

133

Amino Acids

15.38

Weight (kDa)

8.99

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AclWI GGATC 2 cut(s) 124, 209
AcsI RAATTY 2 cut(s) 98, 191
AgsI TTSAA 2 cut(s) 82, 144
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 281
Alw44I GTGCAC 1 cut(s) 314
AlwI GGATC 2 cut(s) 124, 209
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 158, 241
ApoI RAATTY 2 cut(s) 98, 191
AsuHPI GGTGA 2 cut(s) 59, 388
BaeGI GKGCMC 2 cut(s) 136, 318
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 145, 228
BccI CCATC 1 cut(s) 26
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 281
BisI GCNGC 2 cut(s) 159, 242
BlsI GCNGC 2 cut(s) 160, 243
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 219
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 4 cut(s) 50, 53, 56, 311
BseSI GKGCMC 2 cut(s) 136, 318
BseXI GCAGC 2 cut(s) 145, 228
BsiHKAI GWGCWC 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 136, 318
Bsp143I GATC 3 cut(s) 116, 214, 298
BspACI CCGC 1 cut(s) 70
BspPI GGATC 2 cut(s) 124, 209
BsrI ACTGG 1 cut(s) 136
BssMI GATC 3 cut(s) 116, 214, 298
Bst4CI ACNGT 3 cut(s) 313, 331, 399
BstKTI GATC 3 cut(s) 119, 217, 301
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 3 cut(s) 116, 214, 298
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 136, 318
BstV1I GCAGC 2 cut(s) 145, 228
BtsIMutI CAGTG 1 cut(s) 395
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 2 cut(s) 8, 126
CviJI RGCY 2 cut(s) 233, 307
CviKI_1 RGCY 2 cut(s) 233, 307
DpnI GATC 3 cut(s) 118, 216, 300
DpnII GATC 3 cut(s) 116, 214, 298
FaeI CATG 2 cut(s) 11, 129
FaiI YATR 8 cut(s) 9, 29, 55, 127, 201, 351, 353, 392
FatI CATG 2 cut(s) 7, 125
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 159, 242
Fsp4HI GCNGC 2 cut(s) 159, 242
GluI GCNGC 2 cut(s) 159, 242
GsuI CTGGAG 1 cut(s) 324
Hin1II CATG 2 cut(s) 11, 129
HinfI GANTC 2 cut(s) 82, 344
HphI GGTGA 2 cut(s) 59, 388
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 120, 341
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 313, 331, 399
HpyCH4V TGCA 2 cut(s) 316, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
Hsp92II CATG 2 cut(s) 11, 129
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 116, 214, 298
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 149, 354
Lsp1109I GCAGC 2 cut(s) 145, 228
MaeIII GTNAC 1 cut(s) 331
MalI GATC 3 cut(s) 118, 216, 300
MboI GATC 3 cut(s) 116, 214, 298
MboII GAAGA 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 136, 318
MluCI AATT 5 cut(s) 77, 98, 180, 191, 387
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 7 cut(s) 28, 31, 34, 60, 196, 329, 332
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeII GATC 3 cut(s) 116, 214, 298
NlaIII CATG 2 cut(s) 11, 129
PfeI GAWTC 2 cut(s) 82, 344
PkrI GCNGC 2 cut(s) 160, 243
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 159, 242
Sau3AI GATC 3 cut(s) 116, 214, 298
SduI GDGCHC 2 cut(s) 136, 318
SetI ASST 3 cut(s) 52, 321, 361
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 5 cut(s) 77, 98, 180, 191, 387
SsiI CCGC 1 cut(s) 70
TaaI ACNGT 3 cut(s) 313, 331, 399
TasI AATT 5 cut(s) 77, 98, 180, 191, 387
TfiI GAWTC 2 cut(s) 82, 344
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 402
TseI GCWGC 2 cut(s) 158, 241
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 402
VneI GTGCAC 1 cut(s) 314
XapI RAATTY 2 cut(s) 98, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.