Rmu_sc0001208.1_g000032

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001208.1
OG0000418
Physical Location & Seq
Reverse (-)
120509 .. 122200
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001208.1_g000032.1.cds

Sequence Viewer

Length: 942 bp
atgaatatatatggacaatcttctgtggatgaaggattccaatttacctgtgaaggtaattttgatcatgccacccaagatgaagaccaagaagtgagaacagctggtcatggtgctgaagagaagacccgatatgggaggaggactagaggtgcaactgatgatcaaaatgaagaacttgtgggatactttctccagcacagggacatgatgggccatcagttcaactcgaatgagatctctgagtattcggagttttacgaccaagaagaacccagggttgtttgggacaagaacggtggttccagcgtggatgatggagagcctctccttttcttcaccaaacgcaagaagttgaaccccaatggcaagcggtttgatcgcaaagtaggctcgggaatgtggagctggcagttttccagagagaagaacccaagaaaagcgcgatcatcaacaacaacagctactactagtagtgctcagaccaatggtaagaagaggaagaggattgttgataatcaactgagaaaaaccaaggcagtgagatcggaaaaggctgagacttgtgcggaacaacaatctaccatctgtgtcgatcttacagatctggaagagaccaattccgagagtcgagatcatcaactgttgcaagttgttgatgaagattatcatcctgagctctatcctgagttatatcctgataatgggcctctgttttttatggagaaacttcttgcaccaagtcctctaaatgtgccggatcctcttccacacttggagtcgaatgagtctcagtctcgggatcattcatatgaagacaatagcttcatcagtttcctatccgctgaatttcaacaacagttaggtgaagacaacaacttcagcattgtatccaatgatcaatacttggggctgcaacgacttaacatggtagactactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

313

Amino Acids

36.04

Weight (kDa)

4.87

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 445
AciI CCGC 3 cut(s) 373, 569, 843
AclWI GGATC 3 cut(s) 755, 768, 810
AcsI RAATTY 1 cut(s) 848
AcuI CTGAAG 2 cut(s) 138, 865
AfiI CCNNNNNNNGG 3 cut(s) 135, 202, 704
AgsI TTSAA 3 cut(s) 226, 358, 854
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 1 cut(s) 275
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 5 cut(s) 104, 408, 464, 679, 825
AluI AGCT 5 cut(s) 104, 408, 464, 679, 825
Alw21I GWGCWC 2 cut(s) 481, 681
Alw26I GTCTC 4 cut(s) 554, 608, 795, 801
AlwI GGATC 3 cut(s) 755, 768, 810
Ama87I CYCGRG 2 cut(s) 394, 798
AoxI GGCC 2 cut(s) 214, 707
ApeKI GCWGC 1 cut(s) 913
ApoI RAATTY 1 cut(s) 848
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 2 cut(s) 214, 707
AsuHPI GGTGA 2 cut(s) 331, 878
AvaI CYCGRG 2 cut(s) 394, 798
BamHI GGATCC 1 cut(s) 760
BanII GRGCYC 1 cut(s) 681
BbsI GAAGAC 4 cut(s) 90, 131, 822, 876
Bbv12I GWGCWC 2 cut(s) 481, 681
BbvI GCAGC 1 cut(s) 900
BccI CCATC 4 cut(s) 205, 225, 311, 593
BcgI CGANNNNNNTGC 2 cut(s) 528, 562
BciT130I CCWGG 1 cut(s) 277
BciVI GTATCC 2 cut(s) 179, 901
BclI TGATCA 3 cut(s) 64, 163, 898
BcoDI GTCTC 4 cut(s) 554, 608, 795, 801
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 2 cut(s) 147, 471
BfuI GTATCC 2 cut(s) 179, 901
BglII AGATCT 2 cut(s) 237, 604
BisI GCNGC 1 cut(s) 914
BlsI GCNGC 1 cut(s) 915
Bme1390I CCNGG 1 cut(s) 277
BmeT110I CYCGRG 2 cut(s) 394, 798
BmgT120I GGNCC 2 cut(s) 214, 707
BmiI GGNNCC 2 cut(s) 304, 762
BmrFI CCNGG 1 cut(s) 277
BpiI GAAGAC 4 cut(s) 90, 131, 822, 876
BplI GAGNNNNNCTC 2 cut(s) 312, 344
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 675
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 3 cut(s) 275, 276, 534
Bsc4I CCNNNNNNNGG 3 cut(s) 135, 202, 704
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 3 cut(s) 275, 276, 534
BseGI GGATG 3 cut(s) 34, 319, 670
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 3 cut(s) 135, 202, 704
BseMII CTCAG 7 cut(s) 234, 494, 515, 549, 666, 678, 806
BseRI GAGGAG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 900
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 2 cut(s) 216, 709
BsiHKAI GWGCWC 2 cut(s) 481, 681
BsiHKCI CYCGRG 2 cut(s) 394, 798
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 2 cut(s) 218, 302
BslI CCNNNNNNNGG 3 cut(s) 135, 202, 704
BsmAI GTCTC 4 cut(s) 554, 608, 795, 801
BsmFI GGGAC 2 cut(s) 218, 302
BsnI GGCC 2 cut(s) 216, 709
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 2 cut(s) 394, 798
Bsp1286I GDGCHC 2 cut(s) 481, 681
BspACI CCGC 3 cut(s) 373, 569, 843
BspANI GGCC 2 cut(s) 216, 709
BspCNI CTCAG 7 cut(s) 235, 493, 516, 550, 667, 679, 805
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 2 cut(s) 304, 762
BspPI GGATC 3 cut(s) 755, 768, 810
BspTNI GGTCTC 1 cut(s) 608
BssECI CCNNGG 3 cut(s) 275, 276, 534
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 3 cut(s) 299, 645, 861
Bst6I CTCTTC 5 cut(s) 114, 491, 497, 606, 771
BstC8I GCNNGC 2 cut(s) 371, 410
BstDEI CTNAG 7 cut(s) 243, 480, 524, 558, 675, 687, 792
BstF5I GGATG 3 cut(s) 34, 319, 670
BstFNI CGCG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 445
BstMAI GTCTC 4 cut(s) 554, 608, 795, 801
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 900
BstV2I GAAGAC 4 cut(s) 90, 131, 822, 876
BstX2I RGATCY 3 cut(s) 237, 604, 760
BstYI RGATCY 3 cut(s) 237, 604, 760
BsuI GTATCC 2 cut(s) 179, 901
BsuRI GGCC 2 cut(s) 216, 709
BtsCI GGATG 3 cut(s) 34, 319, 670
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 371, 410
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 2 cut(s) 214, 707
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 4 cut(s) 68, 110, 208, 928
DdeI CTNAG 7 cut(s) 243, 480, 524, 558, 675, 687, 792
Eam1104I CTCTTC 5 cut(s) 114, 491, 497, 606, 771
EarI CTCTTC 5 cut(s) 114, 491, 497, 606, 771
Ecl136II GAGCTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 608
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 2 cut(s) 138, 865
Eco88I CYCGRG 2 cut(s) 394, 798
EcoICRI GAGCTC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 4 cut(s) 71, 113, 211, 931
FaqI GGGAC 2 cut(s) 218, 302
FatI CATG 4 cut(s) 67, 109, 207, 927
FauNDI CATATG 1 cut(s) 811
FbaI TGATCA 3 cut(s) 64, 163, 898
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 1 cut(s) 914
FokI GGATG 3 cut(s) 41, 326, 657
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 1 cut(s) 914
FspBI CTAG 2 cut(s) 147, 471
GlaI GCGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 914
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 216, 709
HapII CCGG 1 cut(s) 758
HhaI GCGC 1 cut(s) 445
Hin1II CATG 4 cut(s) 71, 113, 211, 931
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HinfI GANTC 4 cut(s) 36, 628, 779, 788
HpaII CCGG 1 cut(s) 758
HphI GGTGA 2 cut(s) 331, 878
Hpy166II GTNNAC 1 cut(s) 934
Hpy188I TCNGA 5 cut(s) 244, 253, 483, 550, 625
Hpy188III TCNNGA 8 cut(s) 396, 420, 608, 632, 674, 686, 698, 800
Hpy8I GTNNAC 1 cut(s) 934
HpyAV CCTTC 2 cut(s) 26, 47
HpyCH4III ACNGT 3 cut(s) 299, 645, 861
HpyCH4V TGCA 4 cut(s) 155, 649, 737, 916
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 7 cut(s) 243, 480, 524, 558, 675, 687, 792
Hsp92II CATG 4 cut(s) 71, 113, 211, 931
HspAI GCGC 1 cut(s) 443
Ksp22I TGATCA 3 cut(s) 64, 163, 898
LmnI GCTCC 1 cut(s) 405
Lsp1109I GCAGC 1 cut(s) 900
MaeI CTAG 2 cut(s) 147, 471
MflI RGATCY 3 cut(s) 237, 604, 760
MhlI GDGCHC 2 cut(s) 481, 681
MluCI AATT 4 cut(s) 41, 58, 619, 848
MlyI GAGTC 3 cut(s) 637, 788, 797
MnlI CCTC 9 cut(s) 132, 135, 143, 336, 492, 498, 720, 756, 774
MseI TTAA 1 cut(s) 924
MslI CAYNNNNRTG 1 cut(s) 810
MspA1I CMGCKG 2 cut(s) 104, 845
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeI CATATG 1 cut(s) 811
NlaIII CATG 4 cut(s) 71, 113, 211, 931
NlaIV GGNNCC 2 cut(s) 304, 762
PasI CCCWGGG 1 cut(s) 276
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 915
PleI GAGTC 3 cut(s) 636, 787, 796
PpsI GAGTC 3 cut(s) 636, 787, 796
Psp124BI GAGCTC 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 304, 762
PspPI GGNCC 2 cut(s) 214, 707
PsuI RGATCY 3 cut(s) 237, 604, 760
PvuII CAGCTG 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 810
SacI GAGCTC 1 cut(s) 681
SaqAI TTAA 1 cut(s) 924
SatI GCNGC 1 cut(s) 914
Sau96I GGNCC 2 cut(s) 214, 707
SchI GAGTC 3 cut(s) 637, 788, 797
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 2 cut(s) 481, 681
SetI ASST 9 cut(s) 50, 58, 106, 154, 410, 466, 681, 827, 868
SmiMI CAYNNNNRTG 1 cut(s) 810
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 4 cut(s) 41, 58, 619, 848
SsiI CCGC 3 cut(s) 373, 569, 843
SspMI CTAG 2 cut(s) 147, 471
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 299, 645, 861
TaqI TCGA 4 cut(s) 230, 594, 631, 782
TasI AATT 4 cut(s) 41, 58, 619, 848
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 924
Tru9I TTAA 1 cut(s) 924
TscAI CASTG 1 cut(s) 546
TseI GCWGC 1 cut(s) 913
TspDTI ATGAA 8 cut(s) 17, 45, 96, 186, 675, 798, 817, 828
TspRI CASTG 1 cut(s) 546
XapI RAATTY 1 cut(s) 848
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 2 cut(s) 147, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.