Rmu_sc0006003.1_g000019
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006003.1
OG0000418
Physical Location & Seq
Forward (+)
54193 .. 55098
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006003.1_g000019.1.cds

Sequence Viewer

Length: 906 bp
atggtcacattacgatccaggcttccaattcactccaacaaacaagatttcaagaatcgatctttaacaagcaaagaatcaggtctcccagtcagggtcaggttccgtcctacagaccacgaactcctcggttactacctccacagcaggatttccatgggtgaccactttcaatcctacttcgtctttgattgtcctgatttttacggcgataatgagcctcggtttgtttggcagatgtacgacaatgctaaatccaagaaagtagaagttgaaaagactctttatttcttcacccatcgcagaacgttgagtgccaccgccaagcgctttgatcagaaagtcgctttcggcacttggagcggccagtattcaaaacaagttgttgaccaggagggtgatagtgttgttattgggatcaagagggagttccgatatgatggtggttgtgattctcgtcacaacaaggcttggttgatgcaagagtaccagatcattgatgatgattctgatattgtactatgtgctttgaggaagaaccctaaaaaggcaccacttgctgagaggagtaatgttgttgaaaagaccaaagtgaatgacaaaaaaagaaagagcattgtggatcaacccggaaagcctaaagcgaaaaagcagaaaaaggaagagagttatgatcaggaacaagaaggcagcagcagtgttgatcagatgaaagtggaagagaccaattacgagttggatcaagatcacggactgctgcaagtagtgttgccttatccatttgttgatgatcaagattattattatcctgagctttatcctaagctgtgtgttgatgataaggctgatttctctactattgatgaattacttgcacaaaccccaacttggtatgagggcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

301

Amino Acids

35.21

Weight (kDa)

6.21

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 550
AccBSI CCGCTC 1 cut(s) 363
AciI CCGC 2 cut(s) 321, 363
AclI AACGTT 1 cut(s) 308
AclWI GGATC 4 cut(s) 9, 425, 630, 747
AcoI YGGCCR 1 cut(s) 364
AfaI GTAC 3 cut(s) 242, 488, 519
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 3 cut(s) 94, 547, 888
AgsI TTSAA 5 cut(s) 52, 173, 275, 375, 581
AjnI CCWGG 2 cut(s) 17, 390
AluBI AGCT 2 cut(s) 814, 826
AluI AGCT 2 cut(s) 814, 826
Alw26I GTCTC 2 cut(s) 89, 716
AlwI GGATC 4 cut(s) 9, 425, 630, 747
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 3 cut(s) 690, 693, 757
AspLEI GCGC 1 cut(s) 330
AsuC2I CCSGG 1 cut(s) 630
AsuHPI GGTGA 3 cut(s) 173, 286, 410
BanI GGYRCC 1 cut(s) 550
BbvI GCAGC 3 cut(s) 702, 705, 744
BccI CCATC 2 cut(s) 306, 434
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 19, 392
BclI TGATCA 4 cut(s) 334, 673, 703, 790
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 89, 716
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 4 cut(s) 364, 691, 694, 758
BlsI GCNGC 4 cut(s) 365, 692, 695, 759
Bme1390I CCNGG 3 cut(s) 19, 392, 630
BmiI GGNNCC 2 cut(s) 104, 552
BmrFI CCNGG 3 cut(s) 19, 392, 630
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 83
Bpu10I CCTNAGC 2 cut(s) 810, 822
BpuMI CCSGG 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 744
BsaI GGTCTC 2 cut(s) 89, 716
BsaJI CCNNGG 3 cut(s) 127, 156, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 547, 888
Bse1I ACTGG 2 cut(s) 89, 367
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 2 cut(s) 19, 392
BseCI ATCGAT 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 127, 156, 221
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 3 cut(s) 94, 547, 888
BseMII CTCAG 2 cut(s) 552, 801
BseNI ACTGG 2 cut(s) 89, 367
BseRI GAGGAG 2 cut(s) 116, 580
BseXI GCAGC 3 cut(s) 702, 705, 744
BshFI GGCC 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 550
BshVI ATCGAT 1 cut(s) 58
BsiSI CCGG 1 cut(s) 630
BslI CCNNNNNNNGG 3 cut(s) 94, 547, 888
BsmAI GTCTC 2 cut(s) 89, 716
BsnI GGCC 1 cut(s) 366
Bso31I GGTCTC 2 cut(s) 89, 716
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 2 cut(s) 321, 363
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 2 cut(s) 553, 802
BspDI ATCGAT 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 104, 552
BspPI GGATC 4 cut(s) 9, 425, 630, 747
BspT107I GGYRCC 1 cut(s) 550
BspTNI GGTCTC 2 cut(s) 89, 716
BsrBI CCGCTC 1 cut(s) 363
BsrI ACTGG 2 cut(s) 89, 367
BssECI CCNNGG 3 cut(s) 127, 156, 221
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 19, 392
Bst6I CTCTTC 2 cut(s) 657, 714
BstAPI GCANNNNNTGC 1 cut(s) 557
BstDEI CTNAG 3 cut(s) 561, 810, 822
BstDSI CCRYGG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstMAI GTCTC 2 cut(s) 89, 716
BstMWI GCNNNNNNNGC 2 cut(s) 360, 557
BstNI CCWGG 2 cut(s) 19, 392
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 3 cut(s) 17, 390, 628
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 702, 705, 744
Bsu15I ATCGAT 1 cut(s) 58
BsuRI GGCC 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 284
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 703
CfoI GCGC 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 58
Csp6I GTAC 3 cut(s) 241, 487, 518
CviAII CATG 1 cut(s) 157
CviJI RGCY 8 cut(s) 22, 220, 366, 470, 637, 814, 826, 845
CviKI_1 RGCY 8 cut(s) 22, 220, 366, 470, 637, 814, 826, 845
CviQI GTAC 3 cut(s) 241, 487, 518
DdeI CTNAG 3 cut(s) 561, 810, 822
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 657, 714
EarI CTCTTC 2 cut(s) 657, 714
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 89, 716
Eco47III AGCGCT 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 17, 390
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 5 cut(s) 158, 438, 523, 672, 894
FatI CATG 1 cut(s) 156
FbaI TGATCA 4 cut(s) 334, 673, 703, 790
Fnu4HI GCNGC 4 cut(s) 364, 691, 694, 758
Fsp4HI GCNGC 4 cut(s) 364, 691, 694, 758
GlaI GCGC 1 cut(s) 329
GluI GCNGC 4 cut(s) 364, 691, 694, 758
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 366
HapII CCGG 1 cut(s) 630
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 5 cut(s) 55, 77, 280, 452, 506
HpaII CCGG 1 cut(s) 630
HphI GGTGA 3 cut(s) 173, 286, 410
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 4 cut(s) 339, 434, 511, 708
Hpy188III TCNNGA 7 cut(s) 52, 197, 421, 677, 743, 794, 809
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 680
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 481, 760, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 557
HpyF3I CTNAG 3 cut(s) 561, 810, 822
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 4 cut(s) 334, 673, 703, 790
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 3 cut(s) 702, 705, 744
LweI GCATC 1 cut(s) 468
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 4 cut(s) 4, 131, 161, 458
MbiI CCGCTC 1 cut(s) 363
MboII GAAGA 4 cut(s) 283, 547, 674, 731
MluCI AATT 3 cut(s) 27, 727, 866
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 2 cut(s) 60, 717
MnlI CCTC 8 cut(s) 137, 149, 231, 388, 417, 525, 558, 889
MseI TTAA 1 cut(s) 65
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 3 cut(s) 19, 392, 630
MvaI CCWGG 2 cut(s) 19, 392
MwoI GCNNNNNNNGC 2 cut(s) 360, 557
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 1 cut(s) 156
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 104, 552
NmuCI GTSAC 3 cut(s) 4, 161, 458
PfeI GAWTC 4 cut(s) 55, 77, 452, 506
PkrI GCNGC 4 cut(s) 365, 692, 695, 759
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 17, 390
PspEI GGTNACC 1 cut(s) 161
PspGI CCWGG 2 cut(s) 17, 390
PspN4I GGNNCC 2 cut(s) 104, 552
RsaI GTAC 3 cut(s) 242, 488, 519
RsaNI GTAC 3 cut(s) 241, 487, 518
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 4 cut(s) 364, 691, 694, 758
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 3 cut(s) 19, 392, 630
SetI ASST 6 cut(s) 85, 104, 141, 311, 816, 828
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 111
Sse9I AATT 3 cut(s) 27, 727, 866
SsiI CCGC 2 cut(s) 321, 363
StyD4I CCNGG 3 cut(s) 17, 390, 628
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 58
TasI AATT 3 cut(s) 27, 727, 866
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 4 cut(s) 55, 77, 452, 506
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 3 cut(s) 4, 161, 458
TseI GCWGC 3 cut(s) 690, 693, 757
Tsp45I GTSAC 3 cut(s) 4, 161, 458
TspDTI ATGAA 2 cut(s) 725, 879
TspGWI ACGGA 2 cut(s) 95, 765
TspRI CASTG 1 cut(s) 703
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.