RchiOBHm_Chr7g0235081

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000418
Physical Location & Seq
Forward (+)
59758162 .. 59758754
593 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21069

Sequence Viewer

Length: 390 bp
ATGGAATTAGGTTTTCCAGTGGGTGTGAGATTTTATCCTACTGACCGGGAGCTGGTGGGTCACTACCTCCACAACAGAGCTGTTATGGGTGACCAGTTCCAGACCAAATTCGTCTCCGATTGTCCTGATTTTTATGGACAAAACGAGCCTTGGGTTATTTGGGACTTTTATGGTGGGAATAAATCTAGAAATGTAGAGGCTCTCTATTTCTTCACACATCGCAGCAAGTTGAATCCCACCGCTGAGTGCTTTGATCAGAAGGTGGGTTCCGGAACTTGGAGGGAGCAGCACTCGGAAGATGTTGTTGCCAAGGATGACAGTGTTATGGGAATCAAATGGGGCTTGGTTGATGCAAGAGTACCAGATCGTGACTACCACTCACAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

129

Amino Acids

15.0

Weight (kDa)

5.44

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 113 1.5e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 1 cut(s) 240
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 2 cut(s) 52, 276
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 2 cut(s) 52, 80
AluI AGCT 2 cut(s) 52, 80
Alw26I GTCTC 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 222, 286
ApoI RAATTY 1 cut(s) 107
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 101
BbvI GCAGC 2 cut(s) 234, 298
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 186
BisI GCNGC 2 cut(s) 223, 287
BlsI GCNGC 2 cut(s) 224, 288
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 1 cut(s) 340
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpuMI CCSGG 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 149, 309
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 276
Bse1I ACTGG 2 cut(s) 17, 94
BseAI TCCGGA 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 149, 309
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 52, 276
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 17, 94
BseXI GCAGC 2 cut(s) 234, 298
BsiSI CCGG 2 cut(s) 46, 270
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 52, 276
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 2 cut(s) 253, 364
BspACI CCGC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 268
BsrI ACTGG 2 cut(s) 17, 94
BssECI CCNNGG 2 cut(s) 149, 309
BssMI GATC 2 cut(s) 253, 364
BssT1I CCWWGG 2 cut(s) 149, 309
Bst4CI ACNGT 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 89
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 2 cut(s) 256, 367
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 2 cut(s) 253, 364
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 2 cut(s) 234, 298
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 24, 325
Csp6I GTAC 1 cut(s) 359
CviJI RGCY 5 cut(s) 52, 80, 148, 200, 342
CviKI_1 RGCY 5 cut(s) 52, 80, 148, 200, 342
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 255, 366
DpnII GATC 2 cut(s) 253, 364
Eco130I CCWWGG 2 cut(s) 149, 309
Eco91I GGTNACC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 89
EcoT14I CCWWGG 2 cut(s) 149, 309
ErhI CCWWGG 2 cut(s) 149, 309
Esp3I CGTCTC 1 cut(s) 118
FaiI YATR 4 cut(s) 86, 135, 171, 326
FaqI GGGAC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 223, 287
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 2 cut(s) 223, 287
FspBI CTAG 1 cut(s) 186
GluI GCNGC 2 cut(s) 223, 287
HapII CCGG 2 cut(s) 46, 270
HinfI GANTC 2 cut(s) 232, 330
HpaII CCGG 2 cut(s) 46, 270
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 3 cut(s) 118, 258, 295
Hpy188III TCNNGA 5 cut(s) 100, 125, 186, 270, 368
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 269
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 253, 364
LmnI GCTCC 2 cut(s) 49, 283
LpnPI CCDG 8 cut(s) 30, 38, 59, 107, 113, 138, 283, 375
Lsp1109I GCAGC 2 cut(s) 234, 298
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 59, 89, 368
MalI GATC 2 cut(s) 255, 366
MboI GATC 2 cut(s) 253, 364
MboII GAAGA 2 cut(s) 202, 308
MluCI AATT 2 cut(s) 5, 107
MnlI CCTC 3 cut(s) 77, 190, 273
MroI TCCGGA 1 cut(s) 269
MslI CAYNNNNRTG 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 46, 270
MspR9I CCNGG 1 cut(s) 47
NciI CCSGG 1 cut(s) 47
NdeII GATC 2 cut(s) 253, 364
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 3 cut(s) 59, 89, 368
PfeI GAWTC 2 cut(s) 232, 330
PkrI GCNGC 2 cut(s) 224, 288
PspEI GGTNACC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 268
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 385
SatI GCNGC 2 cut(s) 223, 287
Sau3AI GATC 2 cut(s) 253, 364
ScrFI CCNGG 1 cut(s) 47
SetI ASST 5 cut(s) 13, 54, 69, 82, 264
SfaNI GCATC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 385
Sse9I AATT 2 cut(s) 5, 107
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 2 cut(s) 149, 309
TaaI ACNGT 1 cut(s) 320
TasI AATT 2 cut(s) 5, 107
TfiI GAWTC 2 cut(s) 232, 330
TscAI CASTG 2 cut(s) 24, 325
TseFI GTSAC 3 cut(s) 59, 89, 368
TseI GCWGC 2 cut(s) 222, 286
Tsp45I GTSAC 3 cut(s) 59, 89, 368
TspRI CASTG 2 cut(s) 24, 325
XapI RAATTY 1 cut(s) 107
XbaI TCTAGA 1 cut(s) 185
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.