RchiOBHm_Chr5g0045961
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000418
Physical Location & Seq
Reverse (-)
42004589 .. 42005588
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32400

Sequence Viewer

Length: 849 bp
ATGGCAATTCTCTCCAACAAACTCCCAGTCGGGGTCAGGTTCCTTCCCACTGACCAGGAACTGCTCGATTACTATCTCCGCACAAGGATCGCCATGGGTGACCAGTTTCGCACCGATTTCGTCGCCGATTGTCCTCATTTCTACGGAGACAAGGAGCCCTGGGTTGTCTGGCAGATCTACGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAACACTCTCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCGCCAAGAGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGTGGTCAATATTCGAGAGAAGTTGAGGATGATGGTGTTGTTATTGGGCTCAAGCGGGACTTTCGATACGAGGGCGGTTGTGACGAGAGTCACAACGACGCCTGGTTGATGCAAGAGTTTCAGCTTGATGATGATTCGGATTTGGTACTGTGCTCTCTGAGAAAAAATCCTAGAAAGGGGAGCAATACCAGAGTAGTTAATGATAGAAAGAGAAAGAGCATTCCACAACCCAGAAAGCCAAAATCTAAAAGGCAGAAAAACGGAGGGACTTGTCATCAGGAACAAGGCAGCAGTACTGTTCATCCCAATTACGAGTTGCCCTATCCACAAATGGATGTTCATCCCAATTACGAGTTGCCCTATCCACAAATGGATGATCTAGATTTTTCATTTCCTGAGATTTATCCAGATCTGTTTGTTGATGATGGGCGTGATTTATTAACCATGGATGAATTGCTTGGAGAAACCCCAGTTTGGGAGGAGGGCAACAACTTCAATTTGGGGGAGGAGGGCAACAACTTCAATTTGGTTACAGGAGTACCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

282

Amino Acids

32.61

Weight (kDa)

5.04

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 141 2.4e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
AclWI GGATC 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 3 cut(s) 444, 592, 837
AfiI CCNNNNNNNGG 5 cut(s) 31, 294, 473, 771, 772
AgsI TTSAA 2 cut(s) 793, 820
AjnI CCWGG 3 cut(s) 54, 158, 398
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 585
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AsuHPI GGTGA 3 cut(s) 110, 200, 223
BaeI ACNNNNGTAYC 1 cut(s) 819
BanII GRGCYC 2 cut(s) 159, 348
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 1 cut(s) 597
BccI CCATC 3 cut(s) 243, 323, 716
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 4 cut(s) 70, 100, 104, 134
BciT130I CCWGG 3 cut(s) 56, 160, 400
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 468, 677
BglII AGATCT 2 cut(s) 174, 706
BisI GCNGC 2 cut(s) 184, 586
BlsI GCNGC 2 cut(s) 185, 587
BmcAI AGTACT 1 cut(s) 592
Bme1390I CCNGG 3 cut(s) 56, 160, 400
BmiI GGNNCC 3 cut(s) 41, 156, 286
BmrFI CCNGG 3 cut(s) 56, 160, 400
BmrI ACTGGG 2 cut(s) 20, 761
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 2 cut(s) 20, 761
BoxI GACNNNNGTC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 2 cut(s) 72, 636
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 4 cut(s) 93, 158, 159, 741
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 294, 473, 771, 772
Bse1I ACTGG 3 cut(s) 26, 103, 767
Bse8I GATNNNNATC 2 cut(s) 72, 636
BseBI CCWGG 3 cut(s) 56, 160, 400
BseDI CCNNGG 4 cut(s) 93, 158, 159, 741
BseGI GGATG 7 cut(s) 214, 331, 598, 637, 637, 676, 751
BseJI GATNNNNATC 2 cut(s) 72, 636
BseLI CCNNNNNNNGG 5 cut(s) 31, 294, 473, 771, 772
BseMII CTCAG 3 cut(s) 239, 446, 684
BseNI ACTGG 3 cut(s) 26, 103, 767
BseRI GAGGAG 2 cut(s) 791, 818
BseXI GCAGC 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 3 cut(s) 237, 368, 577
BslI CCNNNNNNNGG 5 cut(s) 31, 294, 473, 771, 772
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 237, 368, 577
BsmI GAATGC 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 159, 348, 452
Bsp143I GATC 5 cut(s) 87, 174, 271, 673, 706
Bsp19I CCATGG 2 cut(s) 93, 741
BspACI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
BspCNI CTCAG 3 cut(s) 240, 447, 685
BspLI GGNNCC 3 cut(s) 41, 156, 286
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 26, 103, 767
BssECI CCNNGG 4 cut(s) 93, 158, 159, 741
BssMI GATC 5 cut(s) 87, 174, 271, 673, 706
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 93, 741
Bst2UI CCWGG 3 cut(s) 56, 160, 400
Bst4CI ACNGT 2 cut(s) 447, 595
BstACI GRCGYC 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 248, 455, 693
BstDSI CCRYGG 2 cut(s) 93, 741
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 7 cut(s) 214, 331, 598, 637, 637, 676, 751
BstKTI GATC 5 cut(s) 90, 177, 274, 676, 709
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 5 cut(s) 87, 174, 271, 673, 706
BstNI CCWGG 3 cut(s) 56, 160, 400
BstPAI GACNNNNGTC 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 54, 158, 398
BstV1I GCAGC 1 cut(s) 597
BstX2I RGATCY 2 cut(s) 174, 706
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 2 cut(s) 174, 706
BtgI CCRYGG 2 cut(s) 93, 741
BtsCI GGATG 7 cut(s) 214, 331, 598, 637, 637, 676, 751
BtsIMutI CAGTG 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 61
CseI GACGC 1 cut(s) 404
Csp6I GTAC 3 cut(s) 443, 591, 836
CviAII CATG 2 cut(s) 94, 742
CviJI RGCY 5 cut(s) 157, 247, 346, 421, 535
CviKI_1 RGCY 5 cut(s) 157, 247, 346, 421, 535
CviQI GTAC 3 cut(s) 443, 591, 836
DdeI CTNAG 3 cut(s) 248, 455, 693
DpnI GATC 5 cut(s) 89, 176, 273, 675, 708
DpnII GATC 5 cut(s) 87, 174, 271, 673, 706
Eco130I CCWWGG 2 cut(s) 93, 741
Eco24I GRGCYC 2 cut(s) 159, 348
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 3 cut(s) 54, 158, 398
EcoT14I CCWWGG 2 cut(s) 93, 741
EcoT38I GRGCYC 2 cut(s) 159, 348
ErhI CCWWGG 2 cut(s) 93, 741
FaeI CATG 2 cut(s) 97, 745
FaiI YATR 2 cut(s) 95, 743
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 3 cut(s) 237, 368, 577
FatI CATG 2 cut(s) 93, 741
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 2 cut(s) 184, 586
FokI GGATG 7 cut(s) 221, 338, 585, 624, 644, 683, 758
FriOI GRGCYC 2 cut(s) 159, 348
Fsp4HI GCNGC 2 cut(s) 184, 586
FspBI CTAG 2 cut(s) 468, 677
GluI GCNGC 2 cut(s) 184, 586
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 2 cut(s) 97, 745
HinfI GANTC 4 cut(s) 191, 250, 385, 431
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 110, 200, 223
Hpy188I TCNGA 4 cut(s) 240, 276, 436, 456
Hpy188III TCNNGA 5 cut(s) 312, 575, 677, 692, 704
Hpy99I CGWCG 2 cut(s) 125, 398
HpyAV CCTTC 2 cut(s) 53, 237
HpyCH4III ACNGT 2 cut(s) 447, 595
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 3 cut(s) 248, 455, 693
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 2 cut(s) 97, 745
Kzo9I GATC 5 cut(s) 87, 174, 271, 673, 706
LmnI GCTCC 2 cut(s) 154, 477
Lsp1109I GCAGC 1 cut(s) 597
LweI GCATC 1 cut(s) 396
MaeI CTAG 2 cut(s) 468, 677
MaeIII GTNAC 4 cut(s) 98, 377, 386, 826
MalI GATC 5 cut(s) 89, 176, 273, 675, 708
MboI GATC 5 cut(s) 87, 174, 271, 673, 706
MboII GAAGA 1 cut(s) 220
MflI RGATCY 2 cut(s) 174, 706
MhlI GDGCHC 3 cut(s) 159, 348, 452
MluCI AATT 6 cut(s) 6, 604, 643, 749, 793, 820
MlyI GAGTC 3 cut(s) 200, 259, 394
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 9 cut(s) 144, 199, 316, 361, 554, 769, 772, 796, 799
MseI TTAA 2 cut(s) 495, 737
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 3 cut(s) 56, 160, 400
Mva1269I GAATGC 1 cut(s) 516
MvaI CCWGG 3 cut(s) 56, 160, 400
NcoI CCATGG 2 cut(s) 93, 741
NdeII GATC 5 cut(s) 87, 174, 271, 673, 706
NlaIII CATG 2 cut(s) 97, 745
NlaIV GGNNCC 3 cut(s) 41, 156, 286
NmuCI GTSAC 3 cut(s) 98, 377, 386
PasI CCCWGGG 1 cut(s) 159
PctI GAATGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 2 cut(s) 185, 587
PleI GAGTC 3 cut(s) 199, 258, 393
PpsI GAGTC 3 cut(s) 199, 258, 393
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 3 cut(s) 54, 158, 398
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 54, 158, 398
PspN4I GGNNCC 3 cut(s) 41, 156, 286
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 2 cut(s) 174, 706
RsaI GTAC 3 cut(s) 444, 592, 837
RsaNI GTAC 3 cut(s) 443, 591, 836
SaqAI TTAA 2 cut(s) 495, 737
SatI GCNGC 2 cut(s) 184, 586
Sau3AI GATC 5 cut(s) 87, 174, 271, 673, 706
ScaI AGTACT 1 cut(s) 592
SchI GAGTC 3 cut(s) 200, 259, 394
ScrFI CCNGG 3 cut(s) 56, 160, 400
SduI GDGCHC 3 cut(s) 159, 348, 452
SetI ASST 2 cut(s) 41, 423
SfaNI GCATC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 6 cut(s) 6, 604, 643, 749, 793, 820
SsiI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
SspI AATATT 1 cut(s) 308
SspMI CTAG 2 cut(s) 468, 677
StyD4I CCNGG 3 cut(s) 54, 158, 398
StyI CCWWGG 2 cut(s) 93, 741
TaaI ACNGT 2 cut(s) 447, 595
TaqI TCGA 3 cut(s) 66, 311, 361
TasI AATT 6 cut(s) 6, 604, 643, 749, 793, 820
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 495, 737
Tru9I TTAA 2 cut(s) 495, 737
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 3 cut(s) 98, 377, 386
TseI GCWGC 1 cut(s) 585
Tsp45I GTSAC 3 cut(s) 98, 377, 386
TspDTI ATGAA 5 cut(s) 225, 587, 626, 675, 762
TspGWI ACGGA 2 cut(s) 159, 573
TspRI CASTG 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 676
XspI CTAG 2 cut(s) 468, 677
ZrmI AGTACT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.