Rorug01G0119400
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000418
Physical Location & Seq
Reverse (-)
20880524 .. 20883211
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0119400.1

Sequence Viewer

Length: 651 bp
ATGCATGGGGAACAATGGAAGGGTTTCAATCTCCTGGTGATCTCCTCCTCGTTGTTGCAGGGATGTTTGTCCTCCTGTTGTGCCAAAAGAGTTGTACTGGTATTAGTGTTGAAGTGTGAGGAAGAATATGAAAAAATCAAGAAATCCTTCATTACCAGTAGAATCGGTGGAACCAAAGTTGAGATTAATGGATCTACCATCATCAGTAGAACTAGTGGACCCAAAATTGATGTCAATGGATCCACCAGCTGGCCCAAAATTGATGTCGATGGATCTACCAGCACCAGTAGAACCAGCTGGCCCAAAATTGAGATCAATGGATCCACCAGTACCAGGAGAACTAGTTCCCATGGGCACTTGAGCAGCCTGATTGCACCTCTTCATCTGCTTCTCTCGAGCCCTGACATTCTGGAACCAAAAATAAATGTTCTTGCCCTCAACATGTCCATACTGGTTCAGCTGGAGACAGATCTCGTGAATATGCTCTGTAGTTGGGCACGTAACTCCCTTGTCGTAGTAAAGATCCTTGAGGATCCTTATTTGATCTGGAGTAGGAACCCACCTGGCACGGCTTCGCCAGAAATCTGTGTTGGCACTACTCCCGGCTGCTTGGTTGTTTCCTCCATCCTCGATTTGTTGCTGGGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

216

Amino Acids

23.38

Weight (kDa)

8.16

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AclWI GGATC 9 cut(s) 199, 234, 247, 280, 315, 328, 517, 527, 540
AfaI GTAC 2 cut(s) 96, 331
AfiI CCNNNNNNNGG 2 cut(s) 249, 333
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 2 cut(s) 28, 112
AhlI ACTAGT 2 cut(s) 212, 341
AjnI CCWGG 3 cut(s) 33, 332, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AloI GAACNNNNNNTCC 2 cut(s) 328, 360
AluBI AGCT 3 cut(s) 249, 297, 460
AluI AGCT 3 cut(s) 249, 297, 460
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 9 cut(s) 199, 234, 247, 280, 315, 328, 517, 527, 540
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 2 cut(s) 251, 299
ApeKI GCWGC 2 cut(s) 363, 606
ArsI GACNNNNNNTTYG 4 cut(s) 216, 248, 249, 281
AseI ATTAAT 1 cut(s) 186
Asp700I GAANNNNTTC 3 cut(s) 23, 146, 343
AspS9I GGNCC 3 cut(s) 218, 252, 300
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 1 cut(s) 218
BaeGI GKGCMC 2 cut(s) 357, 499
BamHI GGATCC 3 cut(s) 239, 320, 532
BanII GRGCYC 1 cut(s) 401
BauI CACGAG 1 cut(s) 473
BbvI GCAGC 2 cut(s) 375, 593
BccI CCATC 3 cut(s) 206, 263, 632
BceAI ACGGC 1 cut(s) 585
BciT130I CCWGG 3 cut(s) 35, 334, 564
BcnI CCSGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 458
BcuI ACTAGT 2 cut(s) 212, 341
BfaI CTAG 2 cut(s) 213, 342
BfmI CTRYAG 1 cut(s) 487
BglII AGATCT 1 cut(s) 469
BisI GCNGC 2 cut(s) 364, 607
BlsI GCNGC 2 cut(s) 365, 608
Bme1390I CCNGG 4 cut(s) 35, 334, 564, 603
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 3 cut(s) 218, 252, 300
BmiI GGNNCC 7 cut(s) 172, 220, 241, 322, 414, 534, 557
BmrFI CCNGG 4 cut(s) 35, 334, 564, 603
BpmI CTGGAG 2 cut(s) 482, 568
BpuEI CTTGAG 2 cut(s) 379, 548
BpuMI CCSGG 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 333
Bse1I ACTGG 5 cut(s) 102, 156, 285, 327, 456
BseBI CCWGG 3 cut(s) 35, 334, 564
BseDI CCNNGG 1 cut(s) 349
BseGI GGATG 2 cut(s) 68, 624
BseLI CCNNNNNNNGG 2 cut(s) 249, 333
BseNI ACTGG 5 cut(s) 102, 156, 285, 327, 456
BseRI GAGGAG 2 cut(s) 34, 37
BseSI GKGCMC 2 cut(s) 357, 499
BseXI GCAGC 2 cut(s) 375, 593
BseYI CCCAGC 1 cut(s) 640
BshFI GGCC 2 cut(s) 253, 301
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 249, 333
BsmAI GTCTC 1 cut(s) 458
BsnI GGCC 2 cut(s) 253, 301
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 3 cut(s) 357, 401, 499
Bsp19I CCATGG 1 cut(s) 349
BspANI GGCC 2 cut(s) 253, 301
BspLI GGNNCC 7 cut(s) 172, 220, 241, 322, 414, 534, 557
BspPI GGATC 9 cut(s) 199, 234, 247, 280, 315, 328, 517, 527, 540
BsrI ACTGG 5 cut(s) 102, 156, 285, 327, 456
BssECI CCNNGG 1 cut(s) 349
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 349
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 3 cut(s) 35, 334, 564
Bst6I CTCTTC 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 251, 299
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 2 cut(s) 68, 624
BstMAI GTCTC 1 cut(s) 458
BstNI CCWGG 3 cut(s) 35, 334, 564
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 4 cut(s) 33, 332, 562, 601
BstSFI CTRYAG 1 cut(s) 487
BstSLI GKGCMC 2 cut(s) 357, 499
BstV1I GCAGC 2 cut(s) 375, 593
BstX2I RGATCY 7 cut(s) 191, 239, 272, 320, 469, 522, 532
BstYI RGATCY 7 cut(s) 191, 239, 272, 320, 469, 522, 532
BsuRI GGCC 2 cut(s) 253, 301
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 2 cut(s) 68, 624
Cac8I GCNNGC 2 cut(s) 251, 299
Cfr13I GGNCC 3 cut(s) 218, 252, 300
Csp6I GTAC 2 cut(s) 95, 330
CviAII CATG 3 cut(s) 5, 350, 442
CviJI RGCY 9 cut(s) 249, 253, 297, 301, 366, 399, 460, 572, 606
CviKI_1 RGCY 9 cut(s) 249, 253, 297, 301, 366, 399, 460, 572, 606
CviQI GTAC 2 cut(s) 95, 330
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 33, 332, 562
EcoT14I CCWWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 3 cut(s) 8, 353, 445
FaiI YATR 6 cut(s) 6, 129, 351, 443, 449, 482
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 3 cut(s) 4, 349, 441
Fnu4HI GCNGC 2 cut(s) 364, 607
FokI GGATG 2 cut(s) 75, 611
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 2 cut(s) 364, 607
FspBI CTAG 2 cut(s) 213, 342
GluI GCNGC 2 cut(s) 364, 607
GsaI CCCAGC 1 cut(s) 644
GsuI CTGGAG 2 cut(s) 482, 568
HaeIII GGCC 2 cut(s) 253, 301
HapII CCGG 1 cut(s) 603
Hin1II CATG 3 cut(s) 8, 353, 445
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 603
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 218
Hpy188III TCNNGA 5 cut(s) 139, 394, 410, 475, 547
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 13, 157
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 3 cut(s) 4, 58, 374
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 3 cut(s) 8, 353, 445
Lsp1109I GCAGC 2 cut(s) 375, 593
MaeI CTAG 2 cut(s) 213, 342
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 1 cut(s) 500
MboII GAAGA 2 cut(s) 134, 371
MflI RGATCY 7 cut(s) 191, 239, 272, 320, 469, 522, 532
MhlI GDGCHC 3 cut(s) 357, 401, 499
MluCI AATT 3 cut(s) 225, 258, 306
MnlI CCTC 9 cut(s) 55, 58, 82, 112, 387, 446, 523, 631, 638
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 3 cut(s) 23, 146, 343
MseI TTAA 1 cut(s) 186
MspA1I CMGCKG 3 cut(s) 249, 297, 460
MspI CCGG 1 cut(s) 603
MspR9I CCNGG 4 cut(s) 35, 334, 564, 603
MvaI CCWGG 3 cut(s) 35, 334, 564
NciI CCSGG 1 cut(s) 603
NcoI CCATGG 1 cut(s) 349
NlaIII CATG 3 cut(s) 8, 353, 445
NlaIV GGNNCC 7 cut(s) 172, 220, 241, 322, 414, 534, 557
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 445
PaeR7I CTCGAG 1 cut(s) 394
PciI ACATGT 1 cut(s) 441
PdmI GAANNNNTTC 3 cut(s) 23, 146, 343
PfeI GAWTC 1 cut(s) 162
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 2 cut(s) 365, 608
Ppu21I YACGTR 1 cut(s) 500
PscI ACATGT 1 cut(s) 441
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 3 cut(s) 33, 332, 562
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 33, 332, 562
PspN4I GGNNCC 7 cut(s) 172, 220, 241, 322, 414, 534, 557
PspPI GGNCC 3 cut(s) 218, 252, 300
PsuI RGATCY 7 cut(s) 191, 239, 272, 320, 469, 522, 532
PvuII CAGCTG 3 cut(s) 249, 297, 460
RsaI GTAC 2 cut(s) 96, 331
RsaNI GTAC 2 cut(s) 95, 330
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 364, 607
Sau96I GGNCC 3 cut(s) 218, 252, 300
ScrFI CCNGG 4 cut(s) 35, 334, 564, 603
SduI GDGCHC 3 cut(s) 357, 401, 499
SetI ASST 6 cut(s) 251, 299, 379, 462, 502, 565
SfcI CTRYAG 1 cut(s) 487
Sfr274I CTCGAG 1 cut(s) 394
SinI GGWCC 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 394
SmlI CTYRAG 3 cut(s) 358, 394, 527
SmoI CTYRAG 3 cut(s) 358, 394, 527
SpeI ACTAGT 2 cut(s) 212, 341
Sse9I AATT 3 cut(s) 225, 258, 306
SspMI CTAG 2 cut(s) 213, 342
StyD4I CCNGG 4 cut(s) 33, 332, 562, 601
StyI CCWWGG 1 cut(s) 349
TaiI ACGT 1 cut(s) 502
TaqI TCGA 3 cut(s) 267, 395, 630
TasI AATT 3 cut(s) 225, 258, 306
TatI WGTACW 1 cut(s) 94
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 2 cut(s) 363, 606
TspDTI ATGAA 3 cut(s) 139, 144, 371
Van91I CCANNNNNTGG 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 186
XceI RCATGY 1 cut(s) 445
XhoI CTCGAG 1 cut(s) 394
XmnI GAANNNNTTC 3 cut(s) 23, 146, 343
XspI CTAG 2 cut(s) 213, 342
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.