RLG00000014088
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000418
Physical Location & Seq
Forward (+)
46898811 .. 46899755
945 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014088

Sequence Viewer

Length: 945 bp
ATGGGTTGTTCGATCGGGTACAGGTTTCATCCCACAGATGAAGAACTTGTGGGTTACTTTATCCAGCAAAGGGCCAGGATGGGCAATCACTTCCACTCGAATGAGATCTCCGAGTATCCGGAGTTTTACTGGCAAGAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCTAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTTACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGCAAAGTAGGCTCGGGAACGTGGAGCGGGCAGTTTTCCAGAGAGGTTGTGGCTGCGGATAGAGACACCGGATGCCGTATTAATGGGATTAGGAGGGAATTTAGGTACGAGGGCGGGTGTGATCCTGAACAAAACAACTCTTGGTTGATGCAAGAGTTCGAATTGTGTCCCACTGATGCCTTGGTGTTGTGCACCTTGAAGAAGAACCCAAGAAAAGCTGCTCAGACCAATGGTAAGAAGAGGAAGATGATTGTTGATGATAATCAACCGAGAAAAACCAAGGCAGTGAGATCGGAAAAGGCTGAGACTTGTGAGGAGGAACAACAATCCACCATCTGTGTCTATCTTACAGATCTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAGCTGTTGCAAGTTGATGATTATCAGATCCTATATCCTGATAATGGGCCTCTGTTTTTTGTGGAGGAACTTCTTGCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCAGTGATCAATACTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

315

Amino Acids

36.4

Weight (kDa)

4.65

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 138 5.3e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AccIII TCCGGA 2 cut(s) 118, 733
AciI CCGC 5 cut(s) 241, 276, 305, 363, 855
AclWI GGATC 6 cut(s) 365, 658, 731, 744, 786, 822
AcsI RAATTY 2 cut(s) 347, 860
AcuI CTGAAG 1 cut(s) 877
AfaI GTAC 2 cut(s) 20, 356
AfiI CCNNNNNNNGG 2 cut(s) 70, 680
AgsI TTSAA 3 cut(s) 226, 448, 866
AjnI CCWGG 2 cut(s) 74, 143
AluBI AGCT 4 cut(s) 467, 640, 837, 897
AluI AGCT 4 cut(s) 467, 640, 837, 897
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 5 cut(s) 306, 548, 605, 771, 777
Alw44I GTGCAC 1 cut(s) 439
AlwI GGATC 6 cut(s) 365, 658, 731, 744, 786, 822
Ama87I CYCGRG 1 cut(s) 262
Aor13HI TCCGGA 2 cut(s) 118, 733
AoxI GGCC 2 cut(s) 72, 683
ApaLI GTGCAC 1 cut(s) 439
ApeKI GCWGC 2 cut(s) 302, 467
ApoI RAATTY 2 cut(s) 347, 860
AseI ATTAAT 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 72, 683
AsuII TTCGAA 1 cut(s) 408
AvaI CYCGRG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 443
BamHI GGATCC 1 cut(s) 736
BbsI GAAGAC 2 cut(s) 834, 888
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 2 cut(s) 289, 454
BccI CCATC 3 cut(s) 73, 179, 590
BceAI ACGGC 1 cut(s) 309
BcgI CGANNNNNNTGC 2 cut(s) 522, 556
BciT130I CCWGG 2 cut(s) 76, 145
BciVI GTATCC 2 cut(s) 126, 913
BclI TGATCA 2 cut(s) 802, 910
BcoDI GTCTC 5 cut(s) 306, 548, 605, 771, 777
BfaI CTAG 1 cut(s) 174
BfuI GTATCC 2 cut(s) 126, 913
BglII AGATCT 2 cut(s) 105, 601
BisI GCNGC 2 cut(s) 303, 468
BlsI GCNGC 2 cut(s) 304, 469
Bme1390I CCNGG 2 cut(s) 76, 145
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 72, 683
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 2 cut(s) 76, 145
BmsI GCATC 3 cut(s) 311, 387, 415
BpiI GAAGAC 2 cut(s) 834, 888
BplI GAGNNNNNCTC 2 cut(s) 180, 212
Bpu14I TTCGAA 1 cut(s) 408
BsaBI GATNNNNATC 2 cut(s) 510, 657
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 4 cut(s) 143, 144, 429, 528
BsaWI WCCGGW 3 cut(s) 118, 317, 733
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 680
Bse1I ACTGG 2 cut(s) 134, 906
Bse8I GATNNNNATC 2 cut(s) 510, 657
BseAI TCCGGA 2 cut(s) 118, 733
BseBI CCWGG 2 cut(s) 76, 145
BseDI CCNNGG 4 cut(s) 143, 144, 429, 528
BseGI GGATG 4 cut(s) 28, 84, 187, 326
BseJI GATNNNNATC 2 cut(s) 510, 657
BseLI CCNNNNNNNGG 2 cut(s) 70, 680
BseMII CTCAG 4 cut(s) 485, 543, 782, 788
BseNI ACTGG 2 cut(s) 134, 906
BseRI GAGGAG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 2 cut(s) 289, 454
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 74, 685
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 3 cut(s) 119, 318, 734
BslFI GGGAC 2 cut(s) 170, 402
BslI CCNNNNNNNGG 2 cut(s) 70, 680
BsmAI GTCTC 5 cut(s) 306, 548, 605, 771, 777
BsmFI GGGAC 2 cut(s) 170, 402
BsnI GGCC 2 cut(s) 74, 685
Bso31I GGTCTC 1 cut(s) 605
BsoBI CYCGRG 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 408
Bsp1286I GDGCHC 1 cut(s) 443
Bsp13I TCCGGA 2 cut(s) 118, 733
BspACI CCGC 5 cut(s) 241, 276, 305, 363, 855
BspANI GGCC 2 cut(s) 74, 685
BspCNI CTCAG 4 cut(s) 484, 544, 781, 787
BspEI TCCGGA 2 cut(s) 118, 733
BspHI TCATGA 1 cut(s) 840
BspLI GGNNCC 1 cut(s) 738
BspPI GGATC 6 cut(s) 365, 658, 731, 744, 786, 822
BspT104I TTCGAA 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 276
BsrI ACTGG 2 cut(s) 134, 906
BssECI CCNNGG 4 cut(s) 143, 144, 429, 528
BssT1I CCWWGG 2 cut(s) 429, 528
Bst2UI CCWGG 2 cut(s) 76, 145
Bst4CI ACNGT 2 cut(s) 167, 873
Bst6I CTCTTC 3 cut(s) 482, 603, 747
BstBI TTCGAA 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 239, 278
BstDEI CTNAG 4 cut(s) 471, 552, 768, 774
BstF5I GGATG 4 cut(s) 28, 84, 187, 326
BstMAI GTCTC 5 cut(s) 306, 548, 605, 771, 777
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 76, 145
BstSCI CCNGG 2 cut(s) 74, 143
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 2 cut(s) 289, 454
BstV2I GAAGAC 2 cut(s) 834, 888
BstX2I RGATCY 4 cut(s) 105, 601, 663, 736
BstYI RGATCY 4 cut(s) 105, 601, 663, 736
BsuI GTATCC 2 cut(s) 126, 913
BsuRI GGCC 2 cut(s) 74, 685
BtsCI GGATG 4 cut(s) 28, 84, 187, 326
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 3 cut(s) 420, 540, 913
Cac8I GCNNGC 2 cut(s) 239, 278
CciI TCATGA 1 cut(s) 840
Cfr13I GGNCC 2 cut(s) 72, 683
Csp6I GTAC 2 cut(s) 19, 355
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 2 cut(s) 841, 939
CviQI GTAC 2 cut(s) 19, 355
DdeI CTNAG 4 cut(s) 471, 552, 768, 774
Eam1104I CTCTTC 3 cut(s) 482, 603, 747
EarI CTCTTC 3 cut(s) 482, 603, 747
Eco130I CCWWGG 2 cut(s) 429, 528
Eco31I GGTCTC 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 877
Eco88I CYCGRG 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 74, 143
EcoT14I CCWWGG 2 cut(s) 429, 528
ErhI CCWWGG 2 cut(s) 429, 528
FaeI CATG 2 cut(s) 844, 942
FaiI YATR 7 cut(s) 670, 787, 789, 823, 825, 842, 940
FaqI GGGAC 2 cut(s) 170, 402
FatI CATG 2 cut(s) 840, 938
FauI CCCGC 2 cut(s) 269, 356
FauNDI CATATG 2 cut(s) 787, 823
FbaI TGATCA 2 cut(s) 802, 910
Fnu4HI GCNGC 2 cut(s) 303, 468
FokI GGATG 4 cut(s) 15, 91, 194, 333
Fsp4HI GCNGC 2 cut(s) 303, 468
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 303, 468
HaeIII GGCC 2 cut(s) 74, 685
HapII CCGG 3 cut(s) 119, 318, 734
Hin1II CATG 2 cut(s) 844, 942
HinfI GANTC 3 cut(s) 625, 755, 764
HpaII CCGG 3 cut(s) 119, 318, 734
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 5 cut(s) 112, 474, 544, 622, 663
Hpy8I GTNNAC 1 cut(s) 441
HpyCH4III ACNGT 2 cut(s) 167, 873
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 400, 441, 646, 713, 927
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 4 cut(s) 471, 552, 768, 774
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 2 cut(s) 844, 942
Kpn2I TCCGGA 2 cut(s) 118, 733
Ksp22I TGATCA 2 cut(s) 802, 910
LmnI GCTCC 1 cut(s) 273
Lsp1109I GCAGC 2 cut(s) 289, 454
LweI GCATC 3 cut(s) 311, 387, 415
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 276
MflI RGATCY 4 cut(s) 105, 601, 663, 736
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 5 cut(s) 347, 410, 616, 806, 860
MlyI GAGTC 3 cut(s) 634, 764, 773
MroI TCCGGA 2 cut(s) 118, 733
MseI TTAA 2 cut(s) 330, 935
MslI CAYNNNNRTG 2 cut(s) 99, 822
MspA1I CMGCKG 2 cut(s) 640, 857
MspI CCGG 3 cut(s) 119, 318, 734
MspR9I CCNGG 2 cut(s) 76, 145
MvaI CCWGG 2 cut(s) 76, 145
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeI CATATG 2 cut(s) 787, 823
NlaIII CATG 2 cut(s) 844, 942
NlaIV GGNNCC 1 cut(s) 738
NspV TTCGAA 1 cut(s) 408
PagI TCATGA 1 cut(s) 840
PasI CCCWGGG 1 cut(s) 144
PkrI GCNGC 2 cut(s) 304, 469
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 3 cut(s) 633, 763, 772
PpsI GAGTC 3 cut(s) 633, 763, 772
PshBI ATTAAT 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 74, 143
PspGI CCWGG 2 cut(s) 74, 143
PspN4I GGNNCC 1 cut(s) 738
PspPI GGNCC 2 cut(s) 72, 683
PsuI RGATCY 4 cut(s) 105, 601, 663, 736
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 640
RsaI GTAC 2 cut(s) 20, 356
RsaNI GTAC 2 cut(s) 19, 355
RseI CAYNNNNRTG 2 cut(s) 99, 822
SaqAI TTAA 2 cut(s) 330, 935
SatI GCNGC 2 cut(s) 303, 468
Sau96I GGNCC 2 cut(s) 72, 683
SchI GAGTC 3 cut(s) 634, 764, 773
ScrFI CCNGG 2 cut(s) 76, 145
SduI GDGCHC 1 cut(s) 443
SetI ASST 9 cut(s) 26, 272, 297, 356, 446, 469, 642, 839, 899
SfaNI GCATC 3 cut(s) 311, 387, 415
SfuI TTCGAA 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 99, 822
Sse9I AATT 5 cut(s) 347, 410, 616, 806, 860
SsiI CCGC 5 cut(s) 241, 276, 305, 363, 855
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 74, 143
StyI CCWWGG 2 cut(s) 429, 528
TaaI ACNGT 2 cut(s) 167, 873
TaiI ACGT 1 cut(s) 272
TaqI TCGA 5 cut(s) 11, 98, 408, 628, 758
TasI AATT 5 cut(s) 347, 410, 616, 806, 860
Tru1I TTAA 2 cut(s) 330, 935
Tru9I TTAA 2 cut(s) 330, 935
TscAI CASTG 3 cut(s) 427, 540, 913
TseI GCWGC 2 cut(s) 302, 467
TspDTI ATGAA 5 cut(s) 17, 54, 810, 829, 840
TspRI CASTG 3 cut(s) 427, 540, 913
VneI GTGCAC 1 cut(s) 439
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 2 cut(s) 347, 860
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 427
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.