RLG00000029526
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000418
Physical Location & Seq
Reverse (-)
39878399 .. 39879214
816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029526

Sequence Viewer

Length: 315 bp
ATGGCATCGGGTGCTTACCTAGTTGGTTACAGATTTCATCCTACAGACCTGGAATTGGTGGCTTACTACCTCCACAACCGGGTTGCCATGGTTGATCAGTTTCGCTCGAGTCCAATCTTTGACTTTCCTGATTTCTATGGCCAAAATGAGCCTGGCTCATTTGGGACATGTTCCGTGCCCAATCCAACAGTTGACGGGACTAATATTTCCATTGCTGATTGTCCAAATGATACTTCATATGCCTATTTTGATTCTGAAGTTGAGGAATTCTTTGGCTTGACTACTGATGATATATATGGAGTTTTCAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

105

Amino Acids

11.68

Weight (kDa)

4.05

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 51 8.3e-06 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 2 cut(s) 55, 79
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 48, 151
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 180
BalI TGGCCA 1 cut(s) 141
BciT130I CCWGG 2 cut(s) 50, 153
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 42
Bme1390I CCNGG 3 cut(s) 50, 80, 153
BmeT110I CYCGRG 1 cut(s) 106
BmrFI CCNGG 3 cut(s) 50, 80, 153
BmsI GCATC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 79
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 50, 153
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 55, 79
BseMI GCAATG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 180
BshFI GGCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 2 cut(s) 178, 211
BslI CCNNNNNNNGG 2 cut(s) 55, 79
BsmFI GGGAC 2 cut(s) 178, 211
BsnI GGCC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 94
Bsp19I CCATGG 1 cut(s) 87
BspANI GGCC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 50, 153
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 50, 153
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 3 cut(s) 48, 78, 151
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 37
CviAII CATG 2 cut(s) 88, 168
CviJI RGCY 5 cut(s) 62, 141, 151, 156, 276
CviKI_1 RGCY 5 cut(s) 62, 141, 151, 156, 276
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 48, 151
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 91, 171
FaiI YATR 8 cut(s) 89, 138, 169, 238, 240, 293, 295, 297
FaqI GGGAC 2 cut(s) 178, 211
FatI CATG 2 cut(s) 87, 167
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 94
FokI GGATG 1 cut(s) 24
FspBI CTAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 79
Hin1II CATG 2 cut(s) 91, 171
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 109, 251
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 2 cut(s) 256, 314
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 91, 171
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 35, 62, 92, 138, 141, 165
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 2 cut(s) 53, 266
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 2 cut(s) 80, 256
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 3 cut(s) 50, 80, 153
MvaI CCWGG 2 cut(s) 50, 153
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 238
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 91, 171
NspI RCATGY 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 106
PciI ACATGT 1 cut(s) 167
PfeI GAWTC 1 cut(s) 251
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PscI ACATGT 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 48, 151
PspGI CCWGG 2 cut(s) 48, 151
PspXI VCTCGAGB 1 cut(s) 106
Sau3AI GATC 1 cut(s) 94
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 3 cut(s) 50, 80, 153
SduI GDGCHC 1 cut(s) 180
SetI ASST 3 cut(s) 21, 51, 72
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 53, 266
SspI AATATT 1 cut(s) 205
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 48, 78, 151
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 1 cut(s) 107
TasI AATT 2 cut(s) 53, 266
TfiI GAWTC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 26, 225
TspGWI ACGGA 1 cut(s) 163
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 106
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.