Rh1DG141400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000418
Physical Location & Seq
Forward (+)
29799505 .. 29800017
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG141400.1

Sequence Viewer

Length: 513 bp
ATGAAATTCAGTGAGGATGAGGAGGATATAAACACAGAGAGTTTCAAAAGAAAAAAAATGGAACCTCCTAAACAAAAACAACAACTAATGTTGCCCTCTACCTCTTACTTGTTTGAGCAGCAGTTTGATCAATCTAAAATATTGTTTGATATCGATGAGCTCTGTTATATTGATGATCAGCAGGAGAGCAATGATGATCTCATGGCTTCATTTGCTCCATCATTTGTTACTGATGATCAGCTTGAGGCTGTTGAGGTTGAGAAGGAGGGCAGTAATGATGATCTCATGGCCTCAGCTGGTCAACCGTTATCTGCTAGTGATGATCAGATTCAAACTGTTCTGGTCGACGAGACTAATAATTCCATTACTAATTCTCCTAATGATACTTCATATGCGTATTTTGATCCTGAAGTTGAGGCATTCTTTGGCTTGACTACTGATGATATATACGATGATGATGACTGTCAGTTTTCGAGTTCTGAAATACAGGCATTCTTAGCTTGTCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.29

Weight (kDa)

4.05

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 345
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 1 cut(s) 429
AgsI TTSAA 2 cut(s) 46, 332
AluBI AGCT 4 cut(s) 160, 241, 296, 500
AluI AGCT 4 cut(s) 160, 241, 296, 500
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 398
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 5
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvCI CCTCAGC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 226
BclI TGATCA 4 cut(s) 127, 175, 235, 322
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bse3DI GCAATG 1 cut(s) 196
BseCI ATCGAT 1 cut(s) 153
BseGI GGATG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 344
BsmI GAATGC 2 cut(s) 419, 491
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 305
BspDI ATCGAT 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 196
BssMI GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
Bst4CI ACNGT 3 cut(s) 306, 337, 464
BstDEI CTNAG 2 cut(s) 292, 496
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 7 cut(s) 130, 178, 199, 238, 283, 325, 406
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
BstMWI GCNNNNNNNGC 2 cut(s) 212, 497
BstV1I GCAGC 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 153
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 153
CviAII CATG 2 cut(s) 202, 286
CviJI RGCY 8 cut(s) 160, 206, 241, 248, 290, 296, 429, 500
CviKI_1 RGCY 8 cut(s) 160, 206, 241, 248, 290, 296, 429, 500
DdeI CTNAG 2 cut(s) 292, 496
DpnI GATC 7 cut(s) 129, 177, 198, 237, 282, 324, 405
DpnII GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 160
EcoRV GATATC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 2 cut(s) 205, 289
FaiI YATR 8 cut(s) 29, 168, 203, 287, 391, 393, 446, 448
FatI CATG 2 cut(s) 201, 285
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 4 cut(s) 127, 175, 235, 322
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 290
Hin1II CATG 2 cut(s) 205, 289
HincII GTYRAC 2 cut(s) 302, 346
HindII GTYRAC 2 cut(s) 302, 346
HinfI GANTC 1 cut(s) 328
Hpy166II GTNNAC 2 cut(s) 302, 346
Hpy188I TCNGA 2 cut(s) 327, 481
Hpy188III TCNNGA 2 cut(s) 407, 506
Hpy8I GTNNAC 2 cut(s) 302, 346
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 3 cut(s) 306, 337, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 212, 497
HpyF3I CTNAG 2 cut(s) 292, 496
Hsp92II CATG 2 cut(s) 205, 289
Ksp22I TGATCA 4 cut(s) 127, 175, 235, 322
Kzo9I GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 6 cut(s) 167, 282, 326, 420, 473, 491
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 226
MalI GATC 7 cut(s) 129, 177, 198, 237, 282, 324, 405
MboI GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 3 cut(s) 5, 358, 370
MspA1I CMGCKG 1 cut(s) 296
Mva1269I GAATGC 2 cut(s) 419, 491
MwoI GCNNNNNNNGC 2 cut(s) 212, 497
NdeI CATATG 1 cut(s) 391
NdeII GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
NlaIII CATG 2 cut(s) 205, 289
NlaIV GGNNCC 1 cut(s) 63
PctI GAATGC 2 cut(s) 419, 491
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 162
SalI GTCGAC 1 cut(s) 344
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 7 cut(s) 127, 175, 196, 235, 280, 322, 403
SduI GDGCHC 1 cut(s) 162
SetI ASST 7 cut(s) 67, 104, 162, 243, 258, 298, 502
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 5, 358, 370
SspI AATATT 1 cut(s) 141
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 162
TaaI ACNGT 3 cut(s) 306, 337, 464
TaqI TCGA 3 cut(s) 153, 345, 473
TasI AATT 3 cut(s) 5, 358, 370
TfiI GAWTC 1 cut(s) 328
TscAI CASTG 1 cut(s) 16
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 17, 198, 378
TspRI CASTG 1 cut(s) 16
XapI RAATTY 1 cut(s) 5
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.