Rmu_sc0002722.1_g000010
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002722.1
OG0000418
Physical Location & Seq
Reverse (-)
41995 .. 42423
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002722.1_g000010.1.cds

Sequence Viewer

Length: 345 bp
atggaattgggtgcttacccagttggttacagatttcatccaactgacctggaattggttgcttactacctccacaaccgggacatgttctgtgcccaatccaacaatatgaaagaggaagaaactctgtatttctttactcaccgcaagaaattgaatcccaaagagaaaaaatttgataggaaagtgggatcgggaacatggagtgcccaatattcaaaaactgttgttgctgctgataatagtactgttattggaattaagagagaatttcggtatgagggtggatctgatccacatcaaaatggggctgatgcaggagtaccagatcacatctcacagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

114

Amino Acids

13.03

Weight (kDa)

6.96

Isoelectric Point (pI)

20.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 145
AclWI GGATC 3 cut(s) 199, 287, 295
AcsI RAATTY 2 cut(s) 173, 269
AfaI GTAC 2 cut(s) 247, 324
AfiI CCNNNNNNNGG 2 cut(s) 55, 79
AflIII ACRYGT 1 cut(s) 84
AgsI TTSAA 2 cut(s) 157, 219
AjnI CCWGG 1 cut(s) 48
AlwI GGATC 3 cut(s) 199, 287, 295
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 173, 269
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 97, 211
BbvI GCAGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 1 cut(s) 80
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 50, 80
BmrFI CCNGG 2 cut(s) 50, 80
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 297
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 79
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 2 cut(s) 55, 79
BseNI ACTGG 1 cut(s) 20
BseSI GKGCMC 2 cut(s) 97, 211
BseXI GCAGC 1 cut(s) 220
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 55, 79
BsmFI GGGAC 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 97, 211
Bsp143I GATC 4 cut(s) 191, 287, 292, 328
BspACI CCGC 1 cut(s) 145
BspPI GGATC 3 cut(s) 199, 287, 295
BsrI ACTGG 1 cut(s) 20
BssMI GATC 4 cut(s) 191, 287, 292, 328
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 226, 250, 342
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 4 cut(s) 194, 290, 295, 331
BstMBI GATC 4 cut(s) 191, 287, 292, 328
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 48, 78
BstSLI GKGCMC 2 cut(s) 97, 211
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
BtsCI GGATG 1 cut(s) 37
Csp6I GTAC 2 cut(s) 246, 323
CviAII CATG 2 cut(s) 85, 201
CviJI RGCY 1 cut(s) 311
CviKI_1 RGCY 1 cut(s) 311
CviQI GTAC 2 cut(s) 246, 323
DpnI GATC 4 cut(s) 193, 289, 294, 330
DpnII GATC 4 cut(s) 191, 287, 292, 328
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 88, 204
FaiI YATR 4 cut(s) 86, 110, 202, 279
FaqI GGGAC 1 cut(s) 95
FatI CATG 2 cut(s) 84, 200
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
HapII CCGG 1 cut(s) 79
Hin1II CATG 2 cut(s) 88, 204
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 195
HpyCH4III ACNGT 3 cut(s) 226, 250, 342
HpyCH4V TGCA 1 cut(s) 317
Hsp92II CATG 2 cut(s) 88, 204
Kzo9I GATC 4 cut(s) 191, 287, 292, 328
LpnPI CCDG 6 cut(s) 33, 35, 62, 92, 303, 339
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 26
MalI GATC 4 cut(s) 193, 289, 294, 330
MboI GATC 4 cut(s) 191, 287, 292, 328
MboII GAAGA 1 cut(s) 131
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 2 cut(s) 97, 211
MluCI AATT 6 cut(s) 5, 53, 152, 173, 258, 269
MmeI TCCRAC 2 cut(s) 65, 126
MnlI CCTC 3 cut(s) 80, 109, 274
MseI TTAA 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 50, 80
MvaI CCWGG 1 cut(s) 50
NciI CCSGG 1 cut(s) 80
NdeII GATC 4 cut(s) 191, 287, 292, 328
NlaIII CATG 2 cut(s) 88, 204
NspI RCATGY 1 cut(s) 88
PciI ACATGT 1 cut(s) 84
PfeI GAWTC 1 cut(s) 157
PkrI GCNGC 1 cut(s) 235
PscI ACATGT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 2 cut(s) 247, 324
RsaNI GTAC 2 cut(s) 246, 323
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 4 cut(s) 191, 287, 292, 328
ScaI AGTACT 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 50, 80
SduI GDGCHC 2 cut(s) 97, 211
SetI ASST 2 cut(s) 51, 72
SfaNI GCATC 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 6 cut(s) 5, 53, 152, 173, 258, 269
SsiI CCGC 1 cut(s) 145
SspI AATATT 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 48, 78
TaaI ACNGT 3 cut(s) 226, 250, 342
TasI AATT 6 cut(s) 5, 53, 152, 173, 258, 269
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 26, 125
XapI RAATTY 2 cut(s) 173, 269
XceI RCATGY 1 cut(s) 88
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.