RchiOBHm_Chr5g0045711
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000418
Physical Location & Seq
Reverse (-)
41702201 .. 41703111
911 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32377

Sequence Viewer

Length: 852 bp
ATGGCAATTCTCTCCAACAAACTCCCAGTCGGGGTCAGGTTCCTTCCCACAGACCAGGAACTGCTCGATTACTATCTCCGCACAAGGATCGCCATGGGTGACCAGTTTCGCACCGATTTCGTCGCCGATTGTCCTCATTTCTACGGAGACAAGGAGCCCTGGGTTGTCTGGCAGATCTACGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAATACTCTCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCGCCAAGAGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGTGGTCAATATTCGAGAGAGGTTGAGGATGATGGTGTTGTTATTGGGCTCAAGCGGGACTTTCGATACGAGGGCGGTTGTGACGAGAGTCACAACGACGCTTGGTTGATGCAAGAGTTTCAGCTTGATGATGATTCGGATTTGGTACTGTGCTCTCTGAGAAAAAACCCTAGAAAGGGGAGCAATACCAGAGTAGTTAATGATAAAAAGAGAAAGAGCATTCCACAACCCAGAAAGCCAAAATCTAAAAGGCAGAAAAAGGAAGGGACTTGTCATCAGGAACAAGGCAGCAGCAGTACTGTTCATCCCAATTACGAGTTGCCCTATCCACAAATGGATGTTCATCCCAATTACGAGTTGCCCTATCCACAAATGGATGATCTAGATTTTTATTTGCCTGAGATTTATCCAGATCTGTTTGTTGATGATGGGCGTGATTTATTTACTATGGATGACTTGCTTGGAGAAACCCCAGTTTGGGAGGAGGGCAACAACTTCAATTTGGGGGAGGAGGGCAACAACTTCAATTTGGTTACAGGAGGACCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

283

Amino Acids

32.78

Weight (kDa)

5.05

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 141 2.4e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
AclWI GGATC 1 cut(s) 95
AfaI GTAC 2 cut(s) 444, 595
AfiI CCNNNNNNNGG 6 cut(s) 31, 294, 472, 473, 774, 775
AgsI TTSAA 2 cut(s) 796, 823
AjnI CCWGG 2 cut(s) 54, 158
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 585, 588
ArsI GACNNNNNNTTYG 3 cut(s) 12, 44, 831
AspS9I GGNCC 1 cut(s) 839
AsuHPI GGTGA 3 cut(s) 110, 200, 223
AvaII GGWCC 1 cut(s) 839
BanII GRGCYC 2 cut(s) 159, 348
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 597, 600
BccI CCATC 3 cut(s) 243, 323, 719
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 4 cut(s) 70, 100, 104, 134
BciT130I CCWGG 2 cut(s) 56, 160
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 468, 680
BglII AGATCT 2 cut(s) 174, 709
BisI GCNGC 3 cut(s) 184, 586, 589
BlsI GCNGC 3 cut(s) 185, 587, 590
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 2 cut(s) 56, 160
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 839
BmiI GGNNCC 3 cut(s) 41, 156, 286
BmrFI CCNGG 2 cut(s) 56, 160
BmrI ACTGGG 2 cut(s) 20, 764
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 2 cut(s) 20, 764
BoxI GACNNNNGTC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 2 cut(s) 72, 639
BsaJI CCNNGG 3 cut(s) 93, 158, 159
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 294, 472, 473, 774, 775
Bse1I ACTGG 3 cut(s) 26, 103, 770
Bse8I GATNNNNATC 2 cut(s) 72, 639
BseBI CCWGG 2 cut(s) 56, 160
BseDI CCNNGG 3 cut(s) 93, 158, 159
BseGI GGATG 7 cut(s) 214, 331, 601, 640, 640, 679, 754
BseJI GATNNNNATC 2 cut(s) 72, 639
BseLI CCNNNNNNNGG 6 cut(s) 31, 294, 472, 473, 774, 775
BseMII CTCAG 3 cut(s) 239, 446, 687
BseNI ACTGG 3 cut(s) 26, 103, 770
BseRI GAGGAG 2 cut(s) 794, 821
BseXI GCAGC 2 cut(s) 597, 600
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 3 cut(s) 237, 368, 577
BslI CCNNNNNNNGG 6 cut(s) 31, 294, 472, 473, 774, 775
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 237, 368, 577
BsmI GAATGC 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 159, 348, 452
Bsp143I GATC 5 cut(s) 87, 174, 271, 676, 709
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
BspCNI CTCAG 3 cut(s) 240, 447, 688
BspLI GGNNCC 3 cut(s) 41, 156, 286
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 26, 103, 770
BssECI CCNNGG 3 cut(s) 93, 158, 159
BssMI GATC 5 cut(s) 87, 174, 271, 676, 709
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 56, 160
Bst4CI ACNGT 2 cut(s) 447, 598
BstDEI CTNAG 3 cut(s) 248, 455, 696
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 7 cut(s) 214, 331, 601, 640, 640, 679, 754
BstKTI GATC 5 cut(s) 90, 177, 274, 679, 712
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 5 cut(s) 87, 174, 271, 676, 709
BstNI CCWGG 2 cut(s) 56, 160
BstPAI GACNNNNGTC 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 54, 158
BstV1I GCAGC 2 cut(s) 597, 600
BstX2I RGATCY 2 cut(s) 174, 709
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 2 cut(s) 174, 709
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 7 cut(s) 214, 331, 601, 640, 640, 679, 754
CaiI CAGNNNCTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 839
CseI GACGC 1 cut(s) 404
Csp6I GTAC 2 cut(s) 443, 594
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 157, 247, 346, 421, 535
CviKI_1 RGCY 5 cut(s) 157, 247, 346, 421, 535
CviQI GTAC 2 cut(s) 443, 594
DdeI CTNAG 3 cut(s) 248, 455, 696
DpnI GATC 5 cut(s) 89, 176, 273, 678, 711
DpnII GATC 5 cut(s) 87, 174, 271, 676, 709
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 159, 348
Eco47I GGWCC 1 cut(s) 839
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 54, 158
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 159, 348
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 746
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 3 cut(s) 237, 368, 577
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 184, 586, 589
FokI GGATG 7 cut(s) 221, 338, 588, 627, 647, 686, 761
FriOI GRGCYC 2 cut(s) 159, 348
Fsp4HI GCNGC 3 cut(s) 184, 586, 589
FspBI CTAG 2 cut(s) 468, 680
GluI GCNGC 3 cut(s) 184, 586, 589
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 404
Hin1II CATG 1 cut(s) 97
HinfI GANTC 4 cut(s) 191, 250, 385, 431
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 110, 200, 223
Hpy188I TCNGA 4 cut(s) 240, 276, 436, 456
Hpy188III TCNNGA 4 cut(s) 312, 575, 680, 707
Hpy99I CGWCG 2 cut(s) 125, 398
HpyAV CCTTC 3 cut(s) 53, 237, 554
HpyCH4III ACNGT 2 cut(s) 447, 598
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 3 cut(s) 248, 455, 696
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 5 cut(s) 87, 174, 271, 676, 709
LmnI GCTCC 2 cut(s) 154, 477
Lsp1109I GCAGC 2 cut(s) 597, 600
LweI GCATC 1 cut(s) 396
MaeI CTAG 2 cut(s) 468, 680
MaeIII GTNAC 4 cut(s) 98, 377, 386, 829
MalI GATC 5 cut(s) 89, 176, 273, 678, 711
MboI GATC 5 cut(s) 87, 174, 271, 676, 709
MboII GAAGA 1 cut(s) 220
MflI RGATCY 2 cut(s) 174, 709
MhlI GDGCHC 3 cut(s) 159, 348, 452
MluCI AATT 5 cut(s) 6, 607, 646, 796, 823
MlyI GAGTC 3 cut(s) 200, 259, 394
MmeI TCCRAC 1 cut(s) 39
MseI TTAA 1 cut(s) 495
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 56, 160
Mva1269I GAATGC 1 cut(s) 516
MvaI CCWGG 2 cut(s) 56, 160
NcoI CCATGG 1 cut(s) 93
NdeII GATC 5 cut(s) 87, 174, 271, 676, 709
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 41, 156, 286
NmuCI GTSAC 3 cut(s) 98, 377, 386
PasI CCCWGGG 1 cut(s) 159
PctI GAATGC 1 cut(s) 516
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 3 cut(s) 185, 587, 590
PleI GAGTC 3 cut(s) 199, 258, 393
PpsI GAGTC 3 cut(s) 199, 258, 393
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 54, 158
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 54, 158
PspN4I GGNNCC 3 cut(s) 41, 156, 286
PspPI GGNCC 1 cut(s) 839
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 2 cut(s) 174, 709
RsaI GTAC 2 cut(s) 444, 595
RsaNI GTAC 2 cut(s) 443, 594
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 3 cut(s) 184, 586, 589
Sau3AI GATC 5 cut(s) 87, 174, 271, 676, 709
Sau96I GGNCC 1 cut(s) 839
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 3 cut(s) 200, 259, 394
ScrFI CCNGG 2 cut(s) 56, 160
SduI GDGCHC 3 cut(s) 159, 348, 452
SetI ASST 3 cut(s) 41, 321, 423
SfaNI GCATC 1 cut(s) 396
SinI GGWCC 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 5 cut(s) 6, 607, 646, 796, 823
SsiI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
SspI AATATT 1 cut(s) 308
SspMI CTAG 2 cut(s) 468, 680
StyD4I CCNGG 2 cut(s) 54, 158
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 447, 598
TaqI TCGA 3 cut(s) 66, 311, 361
TasI AATT 5 cut(s) 6, 607, 646, 796, 823
TatI WGTACW 1 cut(s) 593
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseFI GTSAC 3 cut(s) 98, 377, 386
TseI GCWGC 2 cut(s) 585, 588
Tsp45I GTSAC 3 cut(s) 98, 377, 386
TspDTI ATGAA 3 cut(s) 225, 590, 629
TspGWI ACGGA 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 839
XbaI TCTAGA 1 cut(s) 679
XspI CTAG 2 cut(s) 468, 680
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.