RchiOBHm_Chr5g0048841
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000418
Physical Location & Seq
Forward (+)
46220048 .. 46220716
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32654

Sequence Viewer

Length: 669 bp
ATGGCAATTCGCTCATCAGGCCTCCCAGTCGGGGTCAGGTTCCATCCCACAGACCACGAACTGCTCGATTACTATCTCCGCACCAGGATTGCCATGGGTGACCACTTTCACTCCGATTTCGTCGCCGATTGTCCTCATTTTTACGGAGACAATGAGCCCTGGGTTGTCTGGCAAATCTATGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAAGACTCTCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCACCAAGCGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGCGGTCAGAATTCGAGAGAAGTTGAGGATGATGGTGTTGTTATTGGGCTCAAGAGGGAGTTCCGATACGAGGGCGGTTGTGATTCTCGTCACAACGACGCTTGGTTGATGCAAGAGTTTCAGCTCATTAATGATGATTCTGATTTTGTACTGTGCACTTTGAGAAAGAACCCTAGAAAGGCACCACCAACCCCAACTGCTCAGGGGAGCAATGTTGTTGAAAATACCAGAGTTAATGACAAAAAGAGAAAGAGCATTGTGGATCAACCCAGAAAGCCTAAATCGAAAAAGCAGAAAAAGGAAGAGAGTTGTCATCAGGAACAAGAAGGCAGCAGTATTGTTGATCAGATGAAAGTGGGAGAGGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

222

Amino Acids

25.58

Weight (kDa)

8.28

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 141 6.5e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccBSI CCGCTC 1 cut(s) 300
AciI CCGC 5 cut(s) 79, 183, 186, 300, 372
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 4 cut(s) 31, 294, 367, 475
AgsI TTSAA 1 cut(s) 518
AjnI CCWGG 2 cut(s) 83, 158
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 451
AlwI GGATC 1 cut(s) 567
AoxI GGCC 2 cut(s) 19, 660
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 1 cut(s) 627
ApoI RAATTY 1 cut(s) 307
AseI ATTAAT 1 cut(s) 426
AsuHPI GGTGA 3 cut(s) 110, 200, 223
BaeGI GKGCMC 1 cut(s) 455
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 2 cut(s) 159, 348
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 639
BccI CCATC 3 cut(s) 51, 243, 323
BciT130I CCWGG 2 cut(s) 85, 160
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 471
BisI GCNGC 2 cut(s) 184, 628
BlsI GCNGC 2 cut(s) 185, 629
Bme1390I CCNGG 2 cut(s) 85, 160
BmiI GGNNCC 3 cut(s) 41, 286, 480
BmrFI CCNGG 2 cut(s) 85, 160
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 93, 158, 159
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 294, 367, 475
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 2 cut(s) 85, 160
BseDI CCNNGG 3 cut(s) 93, 158, 159
BseGI GGATG 3 cut(s) 43, 214, 331
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 4 cut(s) 31, 294, 367, 475
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 2 cut(s) 239, 512
BseNI ACTGG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 1 cut(s) 639
BshFI GGCC 2 cut(s) 21, 662
BshNI GGYRCC 1 cut(s) 478
BsiHKAI GWGCWC 1 cut(s) 455
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 4 cut(s) 31, 294, 367, 475
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 2 cut(s) 21, 662
Bsp1286I GDGCHC 3 cut(s) 159, 348, 455
Bsp143I GATC 3 cut(s) 271, 559, 640
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 5 cut(s) 79, 183, 186, 300, 372
BspANI GGCC 2 cut(s) 21, 662
BspCNI CTCAG 2 cut(s) 240, 511
BspLI GGNNCC 3 cut(s) 41, 286, 480
BspPI GGATC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 478
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 93, 158, 159
BssMI GATC 3 cut(s) 271, 559, 640
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 85, 160
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 594
BstDEI CTNAG 2 cut(s) 248, 498
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 3 cut(s) 43, 214, 331
BstKTI GATC 3 cut(s) 274, 562, 643
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 3 cut(s) 271, 559, 640
BstMWI GCNNNNNNNGC 2 cut(s) 18, 297
BstNI CCWGG 2 cut(s) 85, 160
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 83, 158
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 1 cut(s) 639
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 2 cut(s) 21, 662
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 3 cut(s) 43, 214, 331
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 446
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 21, 157, 247, 346, 421, 574, 662
CviKI_1 RGCY 7 cut(s) 21, 157, 247, 346, 421, 574, 662
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 2 cut(s) 248, 498
DpnI GATC 3 cut(s) 273, 561, 642
DpnII GATC 3 cut(s) 271, 559, 640
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 21
Eco24I GRGCYC 2 cut(s) 159, 348
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 83, 158
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 159, 348
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 180
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 93
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 2 cut(s) 184, 628
FokI GGATG 3 cut(s) 30, 221, 338
FriOI GRGCYC 2 cut(s) 159, 348
Fsp4HI GCNGC 2 cut(s) 184, 628
FspBI CTAG 1 cut(s) 471
GluI GCNGC 2 cut(s) 184, 628
HaeIII GGCC 2 cut(s) 21, 662
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 404
Hin1II CATG 1 cut(s) 97
HinfI GANTC 5 cut(s) 191, 217, 250, 380, 434
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 110, 200, 223
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 7 cut(s) 115, 240, 276, 306, 362, 439, 645
Hpy188III TCNNGA 3 cut(s) 312, 349, 614
Hpy8I GTNNAC 1 cut(s) 453
Hpy99I CGWCG 2 cut(s) 125, 398
HpyAV CCTTC 2 cut(s) 237, 617
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4V TGCA 2 cut(s) 409, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 297
HpyF3I CTNAG 2 cut(s) 248, 498
Hsp92II CATG 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 3 cut(s) 271, 559, 640
LmnI GCTCC 2 cut(s) 297, 504
Lsp1109I GCAGC 1 cut(s) 639
LweI GCATC 1 cut(s) 396
MaeI CTAG 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 98, 386
MalI GATC 3 cut(s) 273, 561, 642
MbiI CCGCTC 1 cut(s) 300
MboI GATC 3 cut(s) 271, 559, 640
MboII GAAGA 2 cut(s) 220, 611
MhlI GDGCHC 3 cut(s) 159, 348, 455
MluCI AATT 3 cut(s) 6, 307, 664
MlyI GAGTC 3 cut(s) 200, 211, 259
MnlI CCTC 7 cut(s) 32, 144, 199, 316, 345, 361, 652
MseI TTAA 3 cut(s) 426, 531, 667
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 85, 160
MvaI CCWGG 2 cut(s) 85, 160
MwoI GCNNNNNNNGC 2 cut(s) 18, 297
NcoI CCATGG 1 cut(s) 93
NdeII GATC 3 cut(s) 271, 559, 640
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 41, 286, 480
NmuCI GTSAC 2 cut(s) 98, 386
PasI CCCWGGG 1 cut(s) 159
PceI AGGCCT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 2 cut(s) 380, 434
PkrI GCNGC 2 cut(s) 185, 629
PleI GAGTC 3 cut(s) 199, 211, 258
PpsI GAGTC 3 cut(s) 199, 211, 258
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 83, 158
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 83, 158
PspN4I GGNNCC 3 cut(s) 41, 286, 480
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
SaqAI TTAA 3 cut(s) 426, 531, 667
SatI GCNGC 2 cut(s) 184, 628
Sau3AI GATC 3 cut(s) 271, 559, 640
SchI GAGTC 3 cut(s) 200, 211, 259
ScrFI CCNGG 2 cut(s) 85, 160
SduI GDGCHC 3 cut(s) 159, 348, 455
SetI ASST 2 cut(s) 41, 423
SfaNI GCATC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 6, 307, 664
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 5 cut(s) 79, 183, 186, 300, 372
SspMI CTAG 1 cut(s) 471
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 83, 158
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 450
TaqI TCGA 3 cut(s) 66, 311, 581
TasI AATT 3 cut(s) 6, 307, 664
TatI WGTACW 1 cut(s) 445
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 2 cut(s) 380, 434
Tru1I TTAA 3 cut(s) 426, 531, 667
Tru9I TTAA 3 cut(s) 426, 531, 667
TseFI GTSAC 2 cut(s) 98, 386
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 2 cut(s) 98, 386
TspDTI ATGAA 2 cut(s) 225, 662
TspGWI ACGGA 1 cut(s) 159
VneI GTGCAC 1 cut(s) 451
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 1 cut(s) 307
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.