RchiOBHm_Chr6g0266631

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000418
Physical Location & Seq
Reverse (-)
23121104 .. 23122108
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23912

Sequence Viewer

Length: 1005 bp
ATGGGTTATCCGATCGGGTACAGGTTTCATCCTACAGATGAAGAACTTATAGGTTACTTTCTCTACCACAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATTCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTATTTTTCTTCACCAAACGCAAGAAATTGAACCCCAATAGCAAGCGGTTTGATCGCAAAGTAGGCTCGGGAACGTGGAGCGGGCAATTTTCTAGAGAGGTTGTGGCCGAGAATAGAGACACCGGATGTCGTATTACTGGGATGAGGAGGGAATTTAGGTACGAGGGTGGCTGTGATCCTGAACAAAACAACTCTTGGTTGATGCAAGAGTACGAGTTGTGTGCCACTGACGTCTTGGTGTTGTGCACCTTGAAGAAGAACCTAAGAAAAGCACGATCATCAACATCAACAGCTACTACTAGTAGTTCTCAGACCAATGGTAAGAAGAGGAAGAGGATTGTTGATAATCAACCGAGAAAAACCAAGGCAGTGAGATCAGAAAAGGCTGAGACTTGTGAGGAACAACAATCCACCATCTGTGTCGATCTTACAGATCTGGAAGAGACCAATTCCGAGAGTCGAGACCATCAGTTGCTGCAAGTTGTTGATGAAGATTATCATCCTGAGCTCTATCTTGAGTTGCATCCCGATCTCGTTCAGAGCAATGAGCATCTGTTTTTTATGGAGGAACTTTTTGCACCAAGTCCTCTAAATGTTCAGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCACTGAATTTCAACATCAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCAGTGATCAATTCTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

334

Amino Acids

38.82

Weight (kDa)

4.81

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 138 1.1e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 429
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 2 cut(s) 241, 276
AclWI GGATC 5 cut(s) 365, 791, 804, 846, 882
AcoI YGGCCR 2 cut(s) 130, 300
AcsI RAATTY 2 cut(s) 347, 920
AcuI CTGAAG 1 cut(s) 937
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 3 cut(s) 20, 356, 407
AgsI TTSAA 3 cut(s) 226, 448, 926
AhlI ACTAGT 1 cut(s) 494
AjnI CCWGG 2 cut(s) 74, 143
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 4 cut(s) 488, 703, 897, 957
AluI AGCT 4 cut(s) 488, 703, 897, 957
Alw21I GWGCWC 2 cut(s) 443, 705
Alw26I GTCTC 6 cut(s) 306, 578, 632, 651, 831, 837
Alw44I GTGCAC 1 cut(s) 439
AlwI GGATC 5 cut(s) 365, 791, 804, 846, 882
AlwNI CAGNNNCTG 1 cut(s) 670
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 3 cut(s) 72, 130, 300
ApaLI GTGCAC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 670
ApoI RAATTY 2 cut(s) 347, 920
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 443
BaeI ACNNNNGTAYC 2 cut(s) 346, 379
BamHI GGATCC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 705
BbsI GAAGAC 2 cut(s) 894, 948
Bbv12I GWGCWC 2 cut(s) 443, 705
BbvI GCAGC 1 cut(s) 657
BccI CCATC 4 cut(s) 73, 179, 617, 669
BceAI ACGGC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 2 cut(s) 76, 145
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 2 cut(s) 862, 970
BcoDI GTCTC 6 cut(s) 306, 578, 632, 651, 831, 837
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 2 cut(s) 288, 495
BfmI CTRYAG 1 cut(s) 33
BfuI GTATCC 1 cut(s) 973
BglII AGATCT 2 cut(s) 105, 628
BisI GCNGC 1 cut(s) 671
BlsI GCNGC 1 cut(s) 672
Bme1390I CCNGG 2 cut(s) 76, 145
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 2 cut(s) 172, 798
BmrFI CCNGG 2 cut(s) 76, 145
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 3 cut(s) 387, 727, 754
BmuI ACTGGG 1 cut(s) 342
BpiI GAAGAC 2 cut(s) 894, 948
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 731
BsaBI GATNNNNATC 1 cut(s) 693
BsaHI GRCGYC 1 cut(s) 426
BsaI GGTCTC 2 cut(s) 632, 651
BsaJI CCNNGG 3 cut(s) 143, 144, 558
BsaWI WCCGGW 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 337, 966
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 2 cut(s) 76, 145
BseDI CCNNGG 3 cut(s) 143, 144, 558
BseGI GGATG 7 cut(s) 28, 84, 187, 326, 342, 694, 718
BseJI GATNNNNATC 1 cut(s) 693
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 5 cut(s) 518, 573, 690, 842, 848
BseNI ACTGG 2 cut(s) 337, 966
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 1 cut(s) 657
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 3 cut(s) 74, 132, 302
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 443, 705
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 6 cut(s) 306, 578, 632, 651, 831, 837
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 3 cut(s) 74, 132, 302
Bso31I GGTCTC 2 cut(s) 632, 651
BsoBI CYCGRG 1 cut(s) 262
Bsp1286I GDGCHC 2 cut(s) 443, 705
BspACI CCGC 2 cut(s) 241, 276
BspANI GGCC 3 cut(s) 74, 132, 302
BspCNI CTCAG 5 cut(s) 517, 574, 691, 841, 847
BspHI TCATGA 1 cut(s) 900
BspLI GGNNCC 2 cut(s) 172, 798
BspPI GGATC 5 cut(s) 365, 791, 804, 846, 882
BspTNI GGTCTC 2 cut(s) 632, 651
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 745
BsrI ACTGG 2 cut(s) 337, 966
BssECI CCNNGG 3 cut(s) 143, 144, 558
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 76, 145
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 4 cut(s) 515, 521, 630, 807
BstACI GRCGYC 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 239, 278
BstDEI CTNAG 6 cut(s) 458, 504, 582, 699, 828, 834
BstF5I GGATG 7 cut(s) 28, 84, 187, 326, 342, 694, 718
BstMAI GTCTC 6 cut(s) 306, 578, 632, 651, 831, 837
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 76, 145
BstSCI CCNGG 2 cut(s) 74, 143
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 657
BstV2I GAAGAC 2 cut(s) 894, 948
BstX2I RGATCY 3 cut(s) 105, 628, 796
BstYI RGATCY 3 cut(s) 105, 628, 796
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 3 cut(s) 74, 132, 302
BtsCI GGATG 7 cut(s) 28, 84, 187, 326, 342, 694, 718
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 4 cut(s) 420, 570, 915, 973
Cac8I GCNNGC 2 cut(s) 239, 278
CaiI CAGNNNCTG 1 cut(s) 670
CciI TCATGA 1 cut(s) 900
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 3 cut(s) 19, 355, 406
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 2 cut(s) 901, 999
CviQI GTAC 3 cut(s) 19, 355, 406
DdeI CTNAG 6 cut(s) 458, 504, 582, 699, 828, 834
EaeI YGGCCR 2 cut(s) 130, 300
Eam1104I CTCTTC 4 cut(s) 515, 521, 630, 807
EarI CTCTTC 4 cut(s) 515, 521, 630, 807
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 705
Eco31I GGTCTC 2 cut(s) 632, 651
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 937
Eco88I CYCGRG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 703
EcoRII CCWGG 2 cut(s) 74, 143
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 2 cut(s) 904, 1002
FaiI YATR 8 cut(s) 50, 758, 847, 849, 883, 885, 902, 1000
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 900, 998
FauI CCCGC 1 cut(s) 269
FauNDI CATATG 2 cut(s) 847, 883
FbaI TGATCA 2 cut(s) 862, 970
Fnu4HI GCNGC 1 cut(s) 671
FokI GGATG 7 cut(s) 15, 91, 194, 333, 349, 681, 705
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 1 cut(s) 671
FspBI CTAG 2 cut(s) 288, 495
GluI GCNGC 1 cut(s) 671
HaeIII GGCC 3 cut(s) 74, 132, 302
HapII CCGG 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 2 cut(s) 904, 1002
HinfI GANTC 3 cut(s) 652, 815, 824
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 7 cut(s) 12, 112, 121, 507, 574, 649, 735
Hpy8I GTNNAC 1 cut(s) 441
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 2 cut(s) 269, 426
HpyCH4V TGCA 6 cut(s) 400, 441, 673, 718, 773, 987
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 6 cut(s) 458, 504, 582, 699, 828, 834
HpySE526I ACGT 2 cut(s) 269, 426
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 2 cut(s) 904, 1002
Ksp22I TGATCA 2 cut(s) 862, 970
LmnI GCTCC 1 cut(s) 273
Lsp1109I GCAGC 1 cut(s) 657
LweI GCATC 3 cut(s) 387, 727, 754
MaeI CTAG 2 cut(s) 288, 495
MaeII ACGT 2 cut(s) 269, 426
MaeIII GTNAC 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 276
MflI RGATCY 3 cut(s) 105, 628, 796
MhlI GDGCHC 2 cut(s) 443, 705
MluCI AATT 7 cut(s) 221, 281, 347, 643, 866, 920, 974
MlyI GAGTC 3 cut(s) 661, 824, 833
MseI TTAA 1 cut(s) 995
MslI CAYNNNNRTG 2 cut(s) 99, 882
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 76, 145
MvaI CCWGG 2 cut(s) 76, 145
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeI CATATG 2 cut(s) 847, 883
NlaIII CATG 2 cut(s) 904, 1002
NlaIV GGNNCC 2 cut(s) 172, 798
NmeAIII GCCGAG 1 cut(s) 328
PagI TCATGA 1 cut(s) 900
PasI CCCWGGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 672
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 3 cut(s) 660, 823, 832
PpsI GAGTC 3 cut(s) 660, 823, 832
Psp124BI GAGCTC 1 cut(s) 705
Psp6I CCWGG 2 cut(s) 74, 143
PspGI CCWGG 2 cut(s) 74, 143
PspN4I GGNNCC 2 cut(s) 172, 798
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 3 cut(s) 105, 628, 796
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 3 cut(s) 20, 356, 407
RsaNI GTAC 3 cut(s) 19, 355, 406
RseI CAYNNNNRTG 2 cut(s) 99, 882
SacI GAGCTC 1 cut(s) 705
SaqAI TTAA 1 cut(s) 995
SatI GCNGC 1 cut(s) 671
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 3 cut(s) 661, 824, 833
ScrFI CCNGG 2 cut(s) 76, 145
SduI GDGCHC 2 cut(s) 443, 705
SfaNI GCATC 3 cut(s) 387, 727, 754
SfcI CTRYAG 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 99, 882
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 7 cut(s) 221, 281, 347, 643, 866, 920, 974
SsiI CCGC 2 cut(s) 241, 276
SspMI CTAG 2 cut(s) 288, 495
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 74, 143
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 2 cut(s) 272, 429
TaqI TCGA 4 cut(s) 98, 618, 655, 818
TasI AATT 7 cut(s) 221, 281, 347, 643, 866, 920, 974
Tru1I TTAA 1 cut(s) 995
Tru9I TTAA 1 cut(s) 995
TscAI CASTG 4 cut(s) 427, 570, 922, 973
TseI GCWGC 1 cut(s) 670
TspDTI ATGAA 6 cut(s) 17, 54, 699, 870, 889, 900
TspRI CASTG 4 cut(s) 427, 570, 922, 973
VneI GTGCAC 1 cut(s) 439
XapI RAATTY 2 cut(s) 347, 920
XbaI TCTAGA 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XspI CTAG 2 cut(s) 288, 495
ZraI GACGTC 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.