Rh6BG149100
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000418
Physical Location & Seq
Forward (+)
23988954 .. 23990406
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG149100.1

Sequence Viewer

Length: 933 bp
ATGGGTTGTCCGATCGGGATCGGGTACAGGTTTCATCCCACAGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGGTCTCCGAGTACTCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGTAAAGTAGGCTCGGGAACGTGGAGCGGGCAGTTTTCGAGAGAGATTGTGGCCGTGGATAGAGACACCGGATGTCGTATTACTGGGATGAGGAGGGAATTTAGGTACGAGGGTGGGTGTGATCCTGAACAAAACAACTCTTGGTTGATGCATGAGTACGAGTTGTGTGCCAGTGATATCTTGGTGTTGTGCACCTTGAAGAAAAACCTAAGAAAAGCTAGTAGTGCTCAGAAGAGGAAGAGGATTGTTGATAATCAACCGAGAAAAACCAAGGCAGTGAGATCGGAAAAGGCTGAGACTTGTGAGGATGTCGATCTTACAGATCTGGAACAGACCAATTCCGAGAGTCGAGATCATCAGTTGTTGCAAGTTGTTGATGAAGATTATCTCTATCCTGAGTTATATCCTGATAATGGGCCTCTGTTTTCTATGGAGGAACTTCTTGCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTGAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCGAAGACAACAACTACAGCTTTGTATCCAGTGATCAATACTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

310

Amino Acids

35.81

Weight (kDa)

4.64

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 140 2.2e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 282
AccIII TCCGGA 1 cut(s) 721
AciI CCGC 3 cut(s) 247, 282, 843
AclWI GGATC 6 cut(s) 26, 371, 719, 732, 774, 810
AcoI YGGCCR 2 cut(s) 136, 306
AcsI RAATTY 2 cut(s) 353, 848
AfaI GTAC 4 cut(s) 26, 122, 362, 413
AfiI CCNNNNNNNGG 2 cut(s) 76, 668
AgsI TTSAA 3 cut(s) 232, 454, 854
AjnI CCWGG 2 cut(s) 80, 149
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 3 cut(s) 473, 825, 885
AluI AGCT 3 cut(s) 473, 825, 885
Alw21I GWGCWC 3 cut(s) 449, 484, 785
Alw26I GTCTC 5 cut(s) 118, 312, 545, 759, 765
Alw44I GTGCAC 1 cut(s) 445
AlwI GGATC 6 cut(s) 26, 371, 719, 732, 774, 810
Ama87I CYCGRG 1 cut(s) 268
Aor13HI TCCGGA 1 cut(s) 721
AoxI GGCC 4 cut(s) 78, 136, 306, 671
ApaLI GTGCAC 1 cut(s) 445
ApoI RAATTY 2 cut(s) 353, 848
AspS9I GGNCC 2 cut(s) 78, 671
AsuHPI GGTGA 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 449
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BamHI GGATCC 1 cut(s) 724
BbsI GAAGAC 2 cut(s) 822, 876
Bbv12I GWGCWC 3 cut(s) 449, 484, 785
BccI CCATC 2 cut(s) 79, 185
BceAI ACGGC 2 cut(s) 151, 293
BcgI CGANNNNNNTGC 4 cut(s) 404, 438, 519, 553
BciT130I CCWGG 2 cut(s) 82, 151
BciVI GTATCC 1 cut(s) 901
BclI TGATCA 2 cut(s) 790, 898
BcoDI GTCTC 5 cut(s) 118, 312, 545, 759, 765
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 880
BfuI GTATCC 1 cut(s) 901
BglII AGATCT 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 122
Bme1390I CCNGG 2 cut(s) 82, 151
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 78, 671
BmiI GGNNCC 2 cut(s) 178, 726
BmrFI CCNGG 2 cut(s) 82, 151
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 822, 876
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 17, 567
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 4 cut(s) 149, 150, 309, 525
BsaWI WCCGGW 2 cut(s) 323, 721
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 668
Bse1I ACTGG 3 cut(s) 343, 426, 894
Bse8I GATNNNNATC 2 cut(s) 17, 567
BseAI TCCGGA 1 cut(s) 721
BseBI CCWGG 2 cut(s) 82, 151
BseDI CCNNGG 4 cut(s) 149, 150, 309, 525
BseGI GGATG 6 cut(s) 34, 90, 193, 332, 348, 568
BseJI GATNNNNATC 2 cut(s) 17, 567
BseLI CCNNNNNNNGG 2 cut(s) 76, 668
BseMII CTCAG 5 cut(s) 497, 540, 642, 770, 776
BseNI ACTGG 3 cut(s) 343, 426, 894
BseRI GAGGAG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 80, 138, 308, 673
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 3 cut(s) 449, 484, 785
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 2 cut(s) 324, 722
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 76, 668
BsmAI GTCTC 5 cut(s) 118, 312, 545, 759, 765
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 4 cut(s) 80, 138, 308, 673
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 3 cut(s) 449, 484, 785
Bsp13I TCCGGA 1 cut(s) 721
BspACI CCGC 3 cut(s) 247, 282, 843
BspANI GGCC 4 cut(s) 80, 138, 308, 673
BspCNI CTCAG 5 cut(s) 496, 541, 643, 769, 775
BspEI TCCGGA 1 cut(s) 721
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 2 cut(s) 178, 726
BspPI GGATC 6 cut(s) 26, 371, 719, 732, 774, 810
BspTNI GGTCTC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 282
BsrI ACTGG 3 cut(s) 343, 426, 894
BssECI CCNNGG 4 cut(s) 149, 150, 309, 525
BssT1I CCWWGG 1 cut(s) 525
Bst2UI CCWGG 2 cut(s) 82, 151
Bst4CI ACNGT 2 cut(s) 173, 861
Bst6I CTCTTC 3 cut(s) 482, 488, 735
BstC8I GCNNGC 2 cut(s) 245, 284
BstDEI CTNAG 6 cut(s) 464, 483, 549, 651, 756, 762
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 6 cut(s) 34, 90, 193, 332, 348, 568
BstMAI GTCTC 5 cut(s) 118, 312, 545, 759, 765
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 2 cut(s) 82, 151
BstSCI CCNGG 2 cut(s) 80, 149
BstSFI CTRYAG 1 cut(s) 880
BstSLI GKGCMC 1 cut(s) 449
BstV2I GAAGAC 2 cut(s) 822, 876
BstX2I RGATCY 2 cut(s) 577, 724
BstYI RGATCY 2 cut(s) 577, 724
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 4 cut(s) 80, 138, 308, 673
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 6 cut(s) 34, 90, 193, 332, 348, 568
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 433, 537, 901
Cac8I GCNNGC 2 cut(s) 245, 284
CciI TCATGA 1 cut(s) 828
Cfr13I GGNCC 2 cut(s) 78, 671
Csp6I GTAC 4 cut(s) 25, 121, 361, 412
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 3 cut(s) 407, 829, 927
CviQI GTAC 4 cut(s) 25, 121, 361, 412
DdeI CTNAG 6 cut(s) 464, 483, 549, 651, 756, 762
EaeI YGGCCR 2 cut(s) 136, 306
Eam1104I CTCTTC 3 cut(s) 482, 488, 735
EarI CTCTTC 3 cut(s) 482, 488, 735
Eco130I CCWWGG 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 118
Eco32I GATATC 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 80, 149
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 3 cut(s) 410, 832, 930
FaiI YATR 9 cut(s) 408, 658, 686, 775, 777, 811, 813, 830, 928
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 406, 828, 926
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 2 cut(s) 775, 811
FbaI TGATCA 2 cut(s) 790, 898
FokI GGATG 6 cut(s) 21, 97, 200, 339, 355, 575
FspBI CTAG 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 4 cut(s) 80, 138, 308, 673
HapII CCGG 2 cut(s) 324, 722
Hin1II CATG 3 cut(s) 410, 832, 930
HinfI GANTC 3 cut(s) 601, 743, 752
HpaII CCGG 2 cut(s) 324, 722
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 6 cut(s) 12, 118, 127, 486, 541, 598
Hpy8I GTNNAC 1 cut(s) 447
HpyCH4III ACNGT 2 cut(s) 173, 861
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 5 cut(s) 406, 447, 622, 701, 915
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 6 cut(s) 464, 483, 549, 651, 756, 762
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 3 cut(s) 410, 832, 930
Kpn2I TCCGGA 1 cut(s) 721
Ksp22I TGATCA 2 cut(s) 790, 898
LmnI GCTCC 1 cut(s) 279
LweI GCATC 1 cut(s) 393
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 59
MbiI CCGCTC 1 cut(s) 282
MflI RGATCY 2 cut(s) 577, 724
MhlI GDGCHC 3 cut(s) 449, 484, 785
MluCI AATT 4 cut(s) 353, 592, 794, 848
MlyI GAGTC 3 cut(s) 610, 752, 761
Mph1103I ATGCAT 1 cut(s) 408
MroI TCCGGA 1 cut(s) 721
MseI TTAA 1 cut(s) 923
MslI CAYNNNNRTG 2 cut(s) 105, 810
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 2 cut(s) 324, 722
MspR9I CCNGG 2 cut(s) 82, 151
MvaI CCWGG 2 cut(s) 82, 151
MwoI GCNNNNNNNGC 1 cut(s) 479
NdeI CATATG 2 cut(s) 775, 811
NlaIII CATG 3 cut(s) 410, 832, 930
NlaIV GGNNCC 2 cut(s) 178, 726
NsiI ATGCAT 1 cut(s) 408
PagI TCATGA 1 cut(s) 828
PasI CCCWGGG 1 cut(s) 150
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 3 cut(s) 609, 751, 760
PpsI GAGTC 3 cut(s) 609, 751, 760
Psp6I CCWGG 2 cut(s) 80, 149
PspGI CCWGG 2 cut(s) 80, 149
PspN4I GGNNCC 2 cut(s) 178, 726
PspPI GGNCC 2 cut(s) 78, 671
PsuI RGATCY 2 cut(s) 577, 724
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 4 cut(s) 26, 122, 362, 413
RsaNI GTAC 4 cut(s) 25, 121, 361, 412
RseI CAYNNNNRTG 2 cut(s) 105, 810
SaqAI TTAA 1 cut(s) 923
Sau96I GGNCC 2 cut(s) 78, 671
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 3 cut(s) 610, 752, 761
ScrFI CCNGG 2 cut(s) 82, 151
SduI GDGCHC 3 cut(s) 449, 484, 785
SetI ASST 9 cut(s) 32, 114, 278, 362, 452, 465, 475, 827, 887
SfaNI GCATC 1 cut(s) 393
SfcI CTRYAG 1 cut(s) 880
SmiMI CAYNNNNRTG 2 cut(s) 105, 810
Sse9I AATT 4 cut(s) 353, 592, 794, 848
SsiI CCGC 3 cut(s) 247, 282, 843
SspMI CTAG 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 80, 149
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 173, 861
TaiI ACGT 1 cut(s) 278
TaqI TCGA 5 cut(s) 104, 293, 567, 604, 746
TasI AATT 4 cut(s) 353, 592, 794, 848
TatI WGTACW 1 cut(s) 120
Tru1I TTAA 1 cut(s) 923
Tru9I TTAA 1 cut(s) 923
TscAI CASTG 3 cut(s) 433, 537, 901
TspDTI ATGAA 6 cut(s) 23, 60, 648, 798, 817, 828
TspRI CASTG 3 cut(s) 433, 537, 901
VneI GTGCAC 1 cut(s) 445
XapI RAATTY 2 cut(s) 353, 848
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 1 cut(s) 474
ZrmI AGTACT 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.