Rorug03G0211900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000418
Physical Location & Seq
Reverse (-)
18994625 .. 18995335
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0211900.1

Sequence Viewer

Length: 639 bp
ATGTGGAGTAATTGGAAAGAACGGAACTTGGTAGTGCATGGGGGTCAACCAAGACCTGCAGCCATTATTTATGAGCAATGTTATTGTATTTGGAATAATTTGCTTGCGGTGCAAGTACCAGAGCAGGTTGGTACCACGTCTACTCACATTGTTCAAGCTAGTTGGTCTCCTCCATCTCAAGGGGAAGTGATGGTGAGTTGGTACATGCAGTGGGTGAACGGTTGCAAAGCCGTCTTAATTAAGCCTTGCGCTAATGAGTTGCAGGCAGTGATTTTGGAGCTTGAGATGATGGTGGAGCATGGTTGGAGGCCTGAGATGGTGGAAACTGATTGCTTGGAGGCTGTTAATTTGATAAATGGGGAGGAGGATTGCATGCCAGTGAAAGGAGTGTTAGTAGAAAAGGTTAGGCTCCTGATGGGGTCTGTGGAAATTCAAAGTGTTCATCATGTTTCTAGGGTGGCTAGTGGTGCTGCTCATGGTATTGCTCAGTTTGTAACCCAATTAAATGGCCGTCATAGTTGGTTAGGGGTTGAGCCCTCTTGGTTCATGAATGTCATCGGTGATGATAGACCCGTAACTCTTTCTAGTAGAAAAGAGAGTGGGGAATTTTTCACCACCGATTGTTCCCATGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.74

Weight (kDa)

5.31

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 85 - 164 2.5e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 64, 115
Acc65I GGTACC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 140
AciI CCGC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 2 cut(s) 429, 605
AfaI GTAC 3 cut(s) 117, 133, 203
AfiI CCNNNNNNNGG 2 cut(s) 179, 383
AgsI TTSAA 2 cut(s) 155, 434
AjiI CACGTC 1 cut(s) 138
AluBI AGCT 2 cut(s) 158, 280
AluI AGCT 2 cut(s) 158, 280
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 2 cut(s) 308, 508
ApeKI GCWGC 2 cut(s) 59, 470
ApoI RAATTY 2 cut(s) 429, 605
Asp718I GGTACC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 251
AsuHPI GGTGA 4 cut(s) 205, 226, 572, 604
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 537
BbvI GCAGC 2 cut(s) 71, 457
BccI CCATC 5 cut(s) 181, 184, 283, 310, 409
BceAI ACGGC 2 cut(s) 215, 495
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 4 cut(s) 159, 453, 462, 585
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 2 cut(s) 64, 115
BisI GCNGC 2 cut(s) 60, 471
BlsI GCNGC 2 cut(s) 61, 472
BmgBI CACGTC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 133, 410
BpuEI CTTGAG 2 cut(s) 162, 302
BsaI GGTCTC 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 383
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 179, 383
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 2 cut(s) 303, 500
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 2 cut(s) 159, 377
BseXI GCAGC 2 cut(s) 71, 457
BshFI GGCC 2 cut(s) 310, 510
BshNI GGYRCC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 179, 383
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 2 cut(s) 310, 510
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 537
BspACI CCGC 1 cut(s) 107
BspANI GGCC 2 cut(s) 310, 510
BspCNI CTCAG 2 cut(s) 304, 499
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 133, 410
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 2 cut(s) 64, 115
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 105, 264, 374
BstDEI CTNAG 2 cut(s) 312, 486
BstHHI GCGC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 109, 467
BstNSI RCATGY 2 cut(s) 208, 376
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 71, 457
BstXI CCANNNNNNTGG 1 cut(s) 506
BsuRI GGCC 2 cut(s) 310, 510
BtrI CACGTC 1 cut(s) 138
BtsI GCAGTG 2 cut(s) 215, 273
BtsIMutI CAGTG 3 cut(s) 215, 273, 384
BveI ACCTGC 2 cut(s) 64, 115
Cac8I GCNNGC 3 cut(s) 105, 264, 374
CciI TCATGA 1 cut(s) 546
CfoI GCGC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 116, 132, 202
CviAII CATG 8 cut(s) 38, 205, 299, 373, 446, 476, 547, 629
CviQI GTAC 3 cut(s) 116, 132, 202
DdeI CTNAG 2 cut(s) 312, 486
EaeI YGGCCR 1 cut(s) 508
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 537
FaeI CATG 8 cut(s) 41, 208, 302, 376, 449, 479, 550, 632
FatI CATG 8 cut(s) 37, 204, 298, 372, 445, 475, 546, 628
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 2 cut(s) 60, 471
FriOI GRGCYC 1 cut(s) 537
Fsp4HI GCNGC 2 cut(s) 60, 471
FspBI CTAG 4 cut(s) 159, 453, 462, 585
GlaI GCGC 1 cut(s) 250
GluI GCNGC 2 cut(s) 60, 471
HaeIII GGCC 2 cut(s) 310, 510
HhaI GCGC 1 cut(s) 251
Hin1II CATG 8 cut(s) 41, 208, 302, 376, 449, 479, 550, 632
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HphI GGTGA 4 cut(s) 205, 226, 572, 604
Hpy166II GTNNAC 3 cut(s) 47, 141, 217
Hpy188III TCNNGA 2 cut(s) 412, 547
Hpy8I GTNNAC 3 cut(s) 47, 141, 217
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 7 cut(s) 37, 59, 112, 208, 225, 262, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 467
HpyF3I CTNAG 2 cut(s) 312, 486
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 8 cut(s) 41, 208, 302, 376, 449, 479, 550, 632
HspAI GCGC 1 cut(s) 249
KpnI GGTACC 1 cut(s) 135
LmnI GCTCC 3 cut(s) 277, 295, 414
LpnPI CCDG 7 cut(s) 69, 110, 132, 248, 324, 390, 425
Lsp1109I GCAGC 2 cut(s) 71, 457
MaeI CTAG 4 cut(s) 159, 453, 462, 585
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 493, 574
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 7 cut(s) 10, 97, 237, 346, 429, 500, 605
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 6 cut(s) 180, 300, 331, 355, 358, 547
MseI TTAA 4 cut(s) 236, 240, 345, 503
MslI CAYNNNNRTG 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 109, 467
NlaIII CATG 8 cut(s) 41, 208, 302, 376, 449, 479, 550, 632
NlaIV GGNNCC 2 cut(s) 133, 410
NspI RCATGY 2 cut(s) 208, 376
PacI TTAATTAA 1 cut(s) 240
PaeI GCATGC 1 cut(s) 376
PagI TCATGA 1 cut(s) 546
PceI AGGCCT 1 cut(s) 310
PkrI GCNGC 2 cut(s) 61, 472
PspN4I GGNNCC 2 cut(s) 133, 410
PstI CTGCAG 1 cut(s) 61
RsaI GTAC 3 cut(s) 117, 133, 203
RsaNI GTAC 3 cut(s) 116, 132, 202
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 4 cut(s) 236, 240, 345, 503
SatI GCNGC 2 cut(s) 60, 471
SduI GDGCHC 1 cut(s) 537
SetI ASST 6 cut(s) 58, 129, 140, 160, 282, 405
SfcI CTRYAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 177, 281
SmoI CTYRAG 2 cut(s) 177, 281
SphI GCATGC 1 cut(s) 376
Sse9I AATT 7 cut(s) 10, 97, 237, 346, 429, 500, 605
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 1 cut(s) 107
SspMI CTAG 4 cut(s) 159, 453, 462, 585
StuI AGGCCT 1 cut(s) 310
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 140
TasI AATT 7 cut(s) 10, 97, 237, 346, 429, 500, 605
Tru1I TTAA 4 cut(s) 236, 240, 345, 503
Tru9I TTAA 4 cut(s) 236, 240, 345, 503
TscAI CASTG 3 cut(s) 215, 273, 384
TseI GCWGC 2 cut(s) 59, 470
TspDTI ATGAA 3 cut(s) 431, 535, 563
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 3 cut(s) 215, 273, 384
XapI RAATTY 2 cut(s) 429, 605
XceI RCATGY 2 cut(s) 208, 376
XmiI GTMKAC 1 cut(s) 140
XspI CTAG 4 cut(s) 159, 453, 462, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.