Rh7AG442200

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000418
Physical Location & Seq
Forward (+)
60059892 .. 60060365
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG442200.1

Sequence Viewer

Length: 474 bp
ATGGGTGACCAGTTCCAGACCAAATTCGTCTCCGATTGTCCTGATTTTTATGGACAAAACGAGCCTTGGGTTATTTGGGACTTTTATGGTGGGAATAAGTCTAGAAATGTAGAGGCTCTCTATTTCTTCACACATCGCAGCAAGTTGAATCCCACCGCTGAGTGCTTTGATCAGAAGGTGGGTTCCGGAACTTGGAGGGAGCAGCACTCTGAAGATGTTGTTGCCAAGGATGACAGTGTTATGGGAATCAGTCGACATTTTCTGTATGAGGGTGGATGTGATTCTCATCAGAATGGGGCTTGGTTGATGCAAGAGTACCAGATCGTGACTACCACTCACAACAATGATGCTACTGATCAAGAACTTGTACTCTGCACCTTGAGGAAGAACCCTGAAAAACTACCACTACCAACAACAGCTACTGCGAAGAATGGTAATGATGTAGAGGATTATTGTTCAAGGTCATCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

157

Amino Acids

17.89

Weight (kDa)

4.89

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 3 - 108 2.2e-12 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 185
AciI CCGC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 2 cut(s) 317, 369
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 2 cut(s) 148, 459
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 34
AlwNI CAGNNNCTG 1 cut(s) 422
Aor13HI TCCGGA 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 138, 202
ApoI RAATTY 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 17
BbvI GCAGC 2 cut(s) 150, 214
BclI TGATCA 2 cut(s) 169, 355
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 102, 472
BisI GCNGC 2 cut(s) 139, 203
BlsI GCNGC 2 cut(s) 140, 204
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 2 cut(s) 297, 337
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpuEI CTTGAG 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 65, 225
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 10
Bse8I GATNNNNATC 1 cut(s) 285
BseAI TCCGGA 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 65, 225
BseGI GGATG 2 cut(s) 235, 281
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 150, 214
BsgI GTGCAG 1 cut(s) 358
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 34
BsmBI CGTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 185
Bsp143I GATC 3 cut(s) 169, 321, 355
BspACI CCGC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 65, 225
BssMI GATC 3 cut(s) 169, 321, 355
BssT1I CCWWGG 2 cut(s) 65, 225
Bst4CI ACNGT 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 2 cut(s) 235, 281
BstKTI GATC 3 cut(s) 172, 324, 358
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 3 cut(s) 169, 321, 355
BstPI GGTNACC 1 cut(s) 5
BstV1I GCAGC 2 cut(s) 150, 214
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 235, 281
BtsIMutI CAGTG 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 422
Csp6I GTAC 2 cut(s) 316, 368
CviJI RGCY 4 cut(s) 64, 116, 299, 419
CviKI_1 RGCY 4 cut(s) 64, 116, 299, 419
CviQI GTAC 2 cut(s) 316, 368
DdeI CTNAG 1 cut(s) 159
DpnI GATC 3 cut(s) 171, 323, 357
DpnII GATC 3 cut(s) 169, 321, 355
Eco130I CCWWGG 2 cut(s) 65, 225
Eco57I CTGAAG 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EcoT14I CCWWGG 2 cut(s) 65, 225
ErhI CCWWGG 2 cut(s) 65, 225
Esp3I CGTCTC 1 cut(s) 34
FaiI YATR 4 cut(s) 51, 87, 242, 267
FaqI GGGAC 1 cut(s) 92
FbaI TGATCA 2 cut(s) 169, 355
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 139, 203
FokI GGATG 2 cut(s) 242, 288
Fsp4HI GCNGC 2 cut(s) 139, 203
FspBI CTAG 2 cut(s) 102, 472
GluI GCNGC 2 cut(s) 139, 203
HapII CCGG 1 cut(s) 186
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HinfI GANTC 3 cut(s) 148, 246, 281
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 4 cut(s) 34, 174, 211, 291
Hpy188III TCNNGA 6 cut(s) 16, 41, 102, 186, 325, 359
Hpy8I GTNNAC 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 310, 375
HpyF3I CTNAG 1 cut(s) 159
Kpn2I TCCGGA 1 cut(s) 185
Ksp22I TGATCA 2 cut(s) 169, 355
Kzo9I GATC 3 cut(s) 169, 321, 355
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 23, 29, 54, 199, 332, 405
Lsp1109I GCAGC 2 cut(s) 150, 214
LweI GCATC 2 cut(s) 297, 337
MaeI CTAG 2 cut(s) 102, 472
MaeIII GTNAC 2 cut(s) 5, 325
MalI GATC 3 cut(s) 171, 323, 357
MboI GATC 3 cut(s) 169, 321, 355
MboII GAAGA 4 cut(s) 118, 224, 397, 439
MluCI AATT 1 cut(s) 23
MnlI CCTC 5 cut(s) 106, 189, 262, 375, 439
MroI TCCGGA 1 cut(s) 185
MslI CAYNNNNRTG 2 cut(s) 291, 342
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 186
NdeII GATC 3 cut(s) 169, 321, 355
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 5, 325
PfeI GAWTC 3 cut(s) 148, 246, 281
PkrI GCNGC 2 cut(s) 140, 204
PspEI GGTNACC 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 422
RsaI GTAC 2 cut(s) 317, 369
RsaNI GTAC 2 cut(s) 316, 368
RseI CAYNNNNRTG 2 cut(s) 291, 342
SalI GTCGAC 1 cut(s) 252
SatI GCNGC 2 cut(s) 139, 203
Sau3AI GATC 3 cut(s) 169, 321, 355
SetI ASST 5 cut(s) 180, 380, 421, 464, 473
SfaNI GCATC 2 cut(s) 297, 337
SmiMI CAYNNNNRTG 2 cut(s) 291, 342
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 156
SspMI CTAG 2 cut(s) 102, 472
StyI CCWWGG 2 cut(s) 65, 225
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 253
TasI AATT 1 cut(s) 23
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 3 cut(s) 148, 246, 281
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 2 cut(s) 5, 325
TseI GCWGC 2 cut(s) 138, 202
Tsp45I GTSAC 2 cut(s) 5, 325
TspRI CASTG 1 cut(s) 241
XapI RAATTY 1 cut(s) 23
XbaI TCTAGA 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 2 cut(s) 102, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.