Rw3G004730
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000418
Physical Location & Seq
Forward (+)
4025301 .. 4026161
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004730.1

Sequence Viewer

Length: 861 bp
ATGGATGGTTTTCCGGTGGGAGTTAGGTTTCATCCTACAGATAACGAACTCGTCAGCTACTACCTCCGCAACAAGGCTACAATGGGCGACGGGTTTCAGTCCCCTTACGTCTCCGATTGTCCTGATTTCTATGGCAAATGGGAGCCTTGGACTGTTTGGGACAAGTACGGTGGCAATTCCCACGTGGAGGACGGAGAGCCTCTCTTCTTCTTCACCAAACGCAAAAAGTTGAACCCTAATGGCACGCGCTTTGATCGGAAGATGGGCACGGGTACCTGGAGCAACCAGTATTTTGTTAAGGTCGTTGAGGAGGGTAAGGTTATTGGACTCAAGAGGGACTTTCGATACGAGCGTGGAAGCTCTTCAGATCAAAACAATGCTTGGTTGATGCATGAGTATGAGTTGAACAAGAATGATGTAACTGTACTCTGCACCTTGAGAAAAAAACCTACAAAACCACCACCGCGCGGTAGCGAAACTAAGAAGGAGAGTGTGGATGAAAATCAGAGAAAGAGGAAGTTGGACGAAGTTGTTGATGATCTTGAACAAGATCTAGATGAAAGGAGAAAGCTTATTAGAGATCTAGATCAAAGGAGAAAGCTTCGAGCAAACAGGCCGAGAAAGGAAGAGACTTCTTGTGAGGAACAAGGTGGGAGCATTACTATTGATCATCATCAAGGCAGCAGTAGTCGGACGCCATGTGATGAGGCTTATCGGCCTGAGTTGGTTCCGGATCTCGCCACTGCTGATGATATTGTGTTTACTTCAGATGACTTCTTTGCATCAACTCCAGATGATCCACTGCACGTTGAATGTAATGAATTTCTTGATCAATTTTATGAGGACAACAACTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

286

Amino Acids

33.33

Weight (kDa)

5.18

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 135 2.4e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AccII CGCG 3 cut(s) 247, 466, 468
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 3 cut(s) 67, 464, 468
AclWI GGATC 2 cut(s) 741, 791
AcsI RAATTY 1 cut(s) 821
AcuI CTGAAG 2 cut(s) 348, 750
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 695
AfaI GTAC 3 cut(s) 167, 274, 426
AfiI CCNNNNNNNGG 3 cut(s) 73, 187, 467
AgsI TTSAA 5 cut(s) 232, 406, 545, 812, 856
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 4 cut(s) 57, 360, 571, 601
AluI AGCT 4 cut(s) 57, 360, 571, 601
Alw26I GTCTC 2 cut(s) 115, 623
AlwI GGATC 2 cut(s) 741, 791
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 2 cut(s) 614, 716
ApeKI GCWGC 1 cut(s) 681
ApoI RAATTY 1 cut(s) 821
Asp700I GAANNNNTTC 1 cut(s) 361
Asp718I GGTACC 1 cut(s) 272
AspLEI GCGC 2 cut(s) 249, 468
AsuHPI GGTGA 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 269
BaeI ACNNNNGTAYC 2 cut(s) 337, 370
BanI GGYRCC 1 cut(s) 272
BbrPI CACGTG 1 cut(s) 184
BbvI GCAGC 1 cut(s) 693
BccI CCATC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 277
BclI TGATCA 2 cut(s) 667, 829
BcoDI GTCTC 2 cut(s) 115, 623
BfaI CTAG 2 cut(s) 554, 584
BfmI CTRYAG 1 cut(s) 36
BglII AGATCT 2 cut(s) 550, 580
BisI GCNGC 1 cut(s) 682
BlsI GCNGC 1 cut(s) 683
Bme1390I CCNGG 1 cut(s) 277
BmiI GGNNCC 3 cut(s) 144, 274, 729
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 378, 791
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 2 cut(s) 298, 774
BpuEI CTTGAG 2 cut(s) 314, 457
BsaAI YACGTR 1 cut(s) 184
BsaBI GATNNNNATC 3 cut(s) 501, 585, 672
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 2 cut(s) 13, 730
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 187, 467
Bse1I ACTGG 1 cut(s) 286
Bse8I GATNNNNATC 3 cut(s) 501, 585, 672
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 3 cut(s) 10, 31, 502
BseJI GATNNNNATC 3 cut(s) 501, 585, 672
BseLI CCNNNNNNNGG 3 cut(s) 73, 187, 467
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 1 cut(s) 693
BsgI GTGCAG 2 cut(s) 415, 788
Bsh1236I CGCG 3 cut(s) 247, 466, 468
BshFI GGCC 2 cut(s) 616, 718
BshNI GGYRCC 1 cut(s) 272
BsiSI CCGG 2 cut(s) 14, 731
BslFI GGGAC 3 cut(s) 85, 173, 350
BslI CCNNNNNNNGG 3 cut(s) 73, 187, 467
BsmAI GTCTC 2 cut(s) 115, 623
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 3 cut(s) 85, 173, 350
BsnI GGCC 2 cut(s) 616, 718
Bsp1286I GDGCHC 1 cut(s) 269
Bsp13I TCCGGA 1 cut(s) 730
BspACI CCGC 3 cut(s) 67, 464, 468
BspANI GGCC 2 cut(s) 616, 718
BspCNI CTCAG 1 cut(s) 712
BspEI TCCGGA 1 cut(s) 730
BspFNI CGCG 3 cut(s) 247, 466, 468
BspLI GGNNCC 3 cut(s) 144, 274, 729
BspPI GGATC 2 cut(s) 741, 791
BspQI GCTCTTC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 146
BssNI GRCGYC 1 cut(s) 695
BssT1I CCWWGG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 3 cut(s) 154, 170, 424
Bst6I CTCTTC 3 cut(s) 209, 367, 621
BstACI GRCGYC 1 cut(s) 695
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 480, 720
BstF5I GGATG 3 cut(s) 10, 31, 502
BstFNI CGCG 3 cut(s) 247, 466, 468
BstHHI GCGC 2 cut(s) 249, 468
BstMAI GTCTC 2 cut(s) 115, 623
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 269
BstUI CGCG 3 cut(s) 247, 466, 468
BstV1I GCAGC 1 cut(s) 693
BstX2I RGATCY 3 cut(s) 550, 580, 733
BstYI RGATCY 3 cut(s) 550, 580, 733
BsuRI GGCC 2 cut(s) 616, 718
BtsCI GGATG 3 cut(s) 10, 31, 502
BtsI GCAGTG 2 cut(s) 741, 800
BtsIMutI CAGTG 2 cut(s) 741, 800
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 2 cut(s) 249, 468
CseI GACGC 1 cut(s) 703
Csp6I GTAC 3 cut(s) 166, 273, 425
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 2 cut(s) 392, 699
CviQI GTAC 3 cut(s) 166, 273, 425
DdeI CTNAG 2 cut(s) 480, 720
Eam1104I CTCTTC 3 cut(s) 209, 367, 621
EarI CTCTTC 3 cut(s) 209, 367, 621
Eco130I CCWWGG 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 348, 750
Eco72I CACGTG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 395, 702
FaiI YATR 5 cut(s) 132, 393, 399, 700, 840
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 3 cut(s) 85, 173, 350
FatI CATG 2 cut(s) 391, 698
FbaI TGATCA 2 cut(s) 667, 829
Fnu4HI GCNGC 1 cut(s) 682
FokI GGATG 3 cut(s) 17, 18, 509
Fsp4HI GCNGC 1 cut(s) 682
FspBI CTAG 2 cut(s) 554, 584
GlaI GCGC 2 cut(s) 248, 467
GluI GCNGC 1 cut(s) 682
GsuI CTGGAG 2 cut(s) 298, 774
HaeIII GGCC 2 cut(s) 616, 718
HapII CCGG 2 cut(s) 14, 731
HgaI GACGC 1 cut(s) 703
HhaI GCGC 2 cut(s) 249, 468
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 2 cut(s) 395, 702
Hin6I GCGC 2 cut(s) 247, 466
HinP1I GCGC 2 cut(s) 247, 466
HindIII AAGCTT 2 cut(s) 569, 599
HinfI GANTC 1 cut(s) 327
HpaII CCGG 2 cut(s) 14, 731
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 762
Hpy188I TCNGA 6 cut(s) 115, 258, 367, 507, 693, 769
Hpy188III TCNNGA 8 cut(s) 122, 331, 542, 554, 584, 731, 791, 827
Hpy8I GTNNAC 1 cut(s) 762
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 3 cut(s) 154, 170, 424
HpyCH4IV ACGT 3 cut(s) 108, 183, 807
HpyCH4V TGCA 4 cut(s) 391, 432, 782, 805
HpyF3I CTNAG 2 cut(s) 480, 720
HpySE526I ACGT 3 cut(s) 108, 183, 807
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 2 cut(s) 395, 702
HspAI GCGC 2 cut(s) 247, 466
Kpn2I TCCGGA 1 cut(s) 730
KpnI GGTACC 1 cut(s) 276
Ksp22I TGATCA 2 cut(s) 667, 829
LguI GCTCTTC 1 cut(s) 367
LmnI GCTCC 3 cut(s) 142, 279, 654
LpnPI CCDG 9 cut(s) 27, 135, 262, 289, 299, 598, 732, 744, 804
Lsp1109I GCAGC 1 cut(s) 693
LweI GCATC 2 cut(s) 378, 791
MaeI CTAG 2 cut(s) 554, 584
MaeII ACGT 3 cut(s) 108, 183, 807
MaeIII GTNAC 1 cut(s) 418
MboII GAAGA 6 cut(s) 196, 199, 202, 271, 354, 638
MflI RGATCY 3 cut(s) 550, 580, 733
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 3 cut(s) 175, 821, 833
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 2 cut(s) 501, 671
Mph1103I ATGCAT 1 cut(s) 393
MroI TCCGGA 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 361
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 2 cut(s) 14, 731
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 3 cut(s) 247, 466, 468
NlaIII CATG 2 cut(s) 395, 702
NlaIV GGNNCC 3 cut(s) 144, 274, 729
NmeAIII GCCGAG 1 cut(s) 642
NsiI ATGCAT 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 361
PkrI GCNGC 1 cut(s) 683
PleI GAGTC 1 cut(s) 321
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 275
PspCI CACGTG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 144, 274, 729
PsuI RGATCY 3 cut(s) 550, 580, 733
RsaI GTAC 3 cut(s) 167, 274, 426
RsaNI GTAC 3 cut(s) 166, 273, 425
RseI CAYNNNNRTG 1 cut(s) 396
SapI GCTCTTC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 1 cut(s) 682
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 269
SfaNI GCATC 2 cut(s) 378, 791
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 329, 436
SmoI CTYRAG 2 cut(s) 329, 436
Sse9I AATT 3 cut(s) 175, 821, 833
SsiI CCGC 3 cut(s) 67, 464, 468
SspMI CTAG 2 cut(s) 554, 584
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 154, 170, 424
TaiI ACGT 3 cut(s) 111, 186, 810
TaqI TCGA 2 cut(s) 343, 604
TasI AATT 3 cut(s) 175, 821, 833
TatI WGTACW 1 cut(s) 424
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 748, 807
TseI GCWGC 1 cut(s) 681
TspDTI ATGAA 4 cut(s) 20, 513, 573, 834
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 2 cut(s) 748, 807
XapI RAATTY 1 cut(s) 821
XbaI TCTAGA 2 cut(s) 553, 583
XmnI GAANNNNTTC 1 cut(s) 361
XspI CTAG 2 cut(s) 554, 584
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.