Rroxscaffold_1G00033010
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000418
Physical Location & Seq
Reverse (-)
47436192 .. 47437601
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033010.1

Sequence Viewer

Length: 1029 bp
ATGGCAATTCGCTCCGGCCTCCCAGTCGGGGTCAGGTTCCTTCCCACAGACCACGAACTCCTCGATTACTATCTCCACACCAGGATTGCGATGGGTGACCACTTTCACTCCGATTTCGTCGCCGATTGTCCTCATTTTTACGGAGACAATGAGCCCTGGGTTGTCTGGCAAATCTACGGCGGCGGCGGTGAATCCAAGAAAGTGGAGGATGAAAAGACACTCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCGCCAAGCGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGCGGTCAGTATTCGAGAGAAGTTGAGGATGATGATGGTGTTGTTATTGGGCTCAAGAGGGAGTTCCGATACGAGGGCGGTTGTGATTCTCGTCACAACGAGGCTTGGTTGATGCAAGAGTTTCAGCTCATTGATGATGATTCTGATTGTGTACTGTGCACTTTGAGAAAAAACCCTAGGAAGGCACCACCAACCCCAACTGCTCAGGGGAGCAATGTCGTTGAAAATACCAGAGTTAATGACAAGAAGAGAAAGAGCATTGTGGATCAACCCAGAAAGCCTAAATCGAAAAAGCACAAAAAGGAAGAGAGTTGTCAAGAAGGCAGCACTACTGTTGATCAGAATAAAGTGGAAGAGACCAATTACGAAGGCAGCACTACTGTTGATCAGAATAAAGTGGAGTTGGATCAAGATCATGGACTACTGCAACTAGTGTTGCCCTATCCATCTGTTGATGATCAAGATTGTTATTATCCTGAGATTTATCCAGAGCTGTTTGTTGATGATGAGCGTGATTTATTTACTATGGATGAATTACTTGGACAAACCCCAACTTGGGAGGAGGGCAACAACTTCAATTTGGTTACAGGTTGTTATTATCCTGAGATTTATCCAGAGCTGTTTGTTGATGATGAGCGTGATTTATTTACTATGGATGAATTACTTGGACAAACCCCAACTTGGGAGGAGGGCAACCACTTCAATTTGGTTACAGGAGTGCCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

342

Amino Acids

39.48

Weight (kDa)

4.73

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 142 1.6e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 300
AciI CCGC 6 cut(s) 180, 183, 186, 258, 300, 375
AclWI GGATC 2 cut(s) 570, 711
AfaI GTAC 1 cut(s) 450
AfiI CCNNNNNNNGG 8 cut(s) 28, 294, 370, 478, 852, 853, 978, 979
AgsI TTSAA 3 cut(s) 521, 874, 1000
AhlI ACTAGT 1 cut(s) 727
AjnI CCWGG 2 cut(s) 80, 155
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 3 cut(s) 424, 790, 916
AluI AGCT 3 cut(s) 424, 790, 916
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 2 cut(s) 138, 647
Alw44I GTGCAC 1 cut(s) 454
AlwI GGATC 2 cut(s) 570, 711
AoxI GGCC 1 cut(s) 16
ApaLI GTGCAC 1 cut(s) 454
ApeKI GCWGC 2 cut(s) 621, 669
AspA2I CCTAGG 1 cut(s) 473
AsuHPI GGTGA 3 cut(s) 107, 200, 223
AvrII CCTAGG 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 458
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 2 cut(s) 156, 351
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 2 cut(s) 633, 681
BccI CCATC 4 cut(s) 85, 243, 326, 751
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 82, 157
BclI TGATCA 3 cut(s) 634, 682, 754
BcoDI GTCTC 2 cut(s) 138, 647
BcuI ACTAGT 1 cut(s) 727
BfaI CTAG 2 cut(s) 474, 728
BisI GCNGC 4 cut(s) 181, 184, 622, 670
BlnI CCTAGG 1 cut(s) 473
BlsI GCNGC 4 cut(s) 182, 185, 623, 671
Bme1390I CCNGG 2 cut(s) 82, 157
BmiI GGNNCC 3 cut(s) 38, 286, 483
BmrFI CCNGG 2 cut(s) 82, 157
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 399
BmuI ACTGGG 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 335
BsaBI GATNNNNATC 2 cut(s) 69, 708
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 155, 156, 473
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 8 cut(s) 28, 294, 370, 478, 852, 853, 978, 979
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 517
Bse8I GATNNNNATC 2 cut(s) 69, 708
BseBI CCWGG 2 cut(s) 82, 157
BseDI CCNNGG 3 cut(s) 155, 156, 473
BseGI GGATG 4 cut(s) 214, 331, 832, 958
BseJI GATNNNNATC 2 cut(s) 69, 708
BseLI CCNNNNNNNGG 8 cut(s) 28, 294, 370, 478, 852, 853, 978, 979
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 4 cut(s) 239, 515, 765, 891
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 3 cut(s) 50, 872, 998
BseSI GKGCMC 1 cut(s) 458
BseXI GCAGC 2 cut(s) 633, 681
BshFI GGCC 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 2 cut(s) 15, 288
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 8 cut(s) 28, 294, 370, 478, 852, 853, 978, 979
BsmAI GTCTC 2 cut(s) 138, 647
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 647
Bsp1286I GDGCHC 3 cut(s) 156, 351, 458
Bsp143I GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
BspACI CCGC 6 cut(s) 180, 183, 186, 258, 300, 375
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 4 cut(s) 240, 514, 766, 892
BspLI GGNNCC 3 cut(s) 38, 286, 483
BspPI GGATC 2 cut(s) 570, 711
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 647
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 517
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 155, 156, 473
BssMI GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 2 cut(s) 82, 157
Bst4CI ACNGT 3 cut(s) 453, 631, 679
Bst6I CTCTTC 3 cut(s) 539, 597, 645
BstDEI CTNAG 4 cut(s) 248, 501, 774, 900
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 4 cut(s) 214, 331, 832, 958
BstKTI GATC 7 cut(s) 274, 565, 637, 685, 706, 712, 757
BstMAI GTCTC 2 cut(s) 138, 647
BstMBI GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 2 cut(s) 82, 157
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 80, 155
BstSLI GKGCMC 1 cut(s) 458
BstV1I GCAGC 2 cut(s) 633, 681
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 104
BtsCI GGATG 4 cut(s) 214, 331, 832, 958
Csp6I GTAC 1 cut(s) 449
CviAII CATG 1 cut(s) 713
CviJI RGCY 9 cut(s) 18, 154, 247, 349, 401, 424, 577, 790, 916
CviKI_1 RGCY 9 cut(s) 18, 154, 247, 349, 401, 424, 577, 790, 916
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 4 cut(s) 248, 501, 774, 900
DpnI GATC 7 cut(s) 273, 564, 636, 684, 705, 711, 756
DpnII GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
Eam1104I CTCTTC 3 cut(s) 539, 597, 645
EarI CTCTTC 3 cut(s) 539, 597, 645
Eco130I CCWWGG 1 cut(s) 473
Eco24I GRGCYC 2 cut(s) 156, 351
Eco31I GGTCTC 1 cut(s) 647
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 80, 155
EcoT14I CCWWGG 1 cut(s) 473
EcoT38I GRGCYC 2 cut(s) 156, 351
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 1 cut(s) 716
FaiI YATR 3 cut(s) 714, 824, 950
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 712
FbaI TGATCA 3 cut(s) 634, 682, 754
Fnu4HI GCNGC 4 cut(s) 181, 184, 622, 670
FokI GGATG 4 cut(s) 221, 338, 839, 965
FriOI GRGCYC 2 cut(s) 156, 351
Fsp4HI GCNGC 4 cut(s) 181, 184, 622, 670
FspBI CTAG 2 cut(s) 474, 728
GluI GCNGC 4 cut(s) 181, 184, 622, 670
HaeIII GGCC 1 cut(s) 18
HapII CCGG 2 cut(s) 15, 288
Hin1II CATG 1 cut(s) 716
HinfI GANTC 4 cut(s) 191, 250, 383, 437
HpaII CCGG 2 cut(s) 15, 288
HphI GGTGA 3 cut(s) 107, 200, 223
Hpy166II GTNNAC 2 cut(s) 449, 456
Hpy188I TCNGA 7 cut(s) 112, 240, 276, 365, 442, 639, 687
Hpy188III TCNNGA 9 cut(s) 312, 352, 614, 707, 758, 773, 785, 899, 911
Hpy8I GTNNAC 2 cut(s) 449, 456
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 5 cut(s) 50, 237, 472, 611, 659
HpyCH4III ACNGT 3 cut(s) 453, 631, 679
HpyCH4V TGCA 3 cut(s) 412, 456, 724
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 4 cut(s) 248, 501, 774, 900
Hsp92II CATG 1 cut(s) 716
Ksp22I TGATCA 3 cut(s) 634, 682, 754
Kzo9I GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
LmnI GCTCC 3 cut(s) 17, 297, 507
Lsp1109I GCAGC 2 cut(s) 633, 681
LweI GCATC 1 cut(s) 399
MaeI CTAG 2 cut(s) 474, 728
MaeIII GTNAC 4 cut(s) 95, 389, 880, 1006
MalI GATC 7 cut(s) 273, 564, 636, 684, 705, 711, 756
MbiI CCGCTC 1 cut(s) 300
MboI GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
MboII GAAGA 4 cut(s) 220, 556, 614, 662
MhlI GDGCHC 3 cut(s) 156, 351, 458
MluCI AATT 6 cut(s) 6, 658, 830, 874, 956, 1000
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 681
MseI TTAA 1 cut(s) 534
MspI CCGG 2 cut(s) 15, 288
MspR9I CCNGG 2 cut(s) 82, 157
MvaI CCWGG 2 cut(s) 82, 157
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
NlaIII CATG 1 cut(s) 716
NlaIV GGNNCC 3 cut(s) 38, 286, 483
NmuCI GTSAC 2 cut(s) 95, 389
PasI CCCWGGG 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 3 cut(s) 191, 383, 437
PkrI GCNGC 4 cut(s) 182, 185, 623, 671
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 80, 155
PspEI GGTNACC 1 cut(s) 95
PspGI CCWGG 2 cut(s) 80, 155
PspN4I GGNNCC 3 cut(s) 38, 286, 483
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 4 cut(s) 181, 184, 622, 670
Sau3AI GATC 7 cut(s) 271, 562, 634, 682, 703, 709, 754
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 82, 157
SduI GDGCHC 3 cut(s) 156, 351, 458
SetI ASST 5 cut(s) 38, 426, 792, 889, 918
SfaNI GCATC 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SpeI ACTAGT 1 cut(s) 727
Sse9I AATT 6 cut(s) 6, 658, 830, 874, 956, 1000
SsiI CCGC 6 cut(s) 180, 183, 186, 258, 300, 375
SspMI CTAG 2 cut(s) 474, 728
StyD4I CCNGG 2 cut(s) 80, 155
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 3 cut(s) 453, 631, 679
TaqI TCGA 3 cut(s) 63, 311, 584
TasI AATT 6 cut(s) 6, 658, 830, 874, 956, 1000
TatI WGTACW 1 cut(s) 448
TauI GCSGC 2 cut(s) 183, 186
TfiI GAWTC 3 cut(s) 191, 383, 437
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 2 cut(s) 95, 389
TseI GCWGC 2 cut(s) 621, 669
Tsp45I GTSAC 2 cut(s) 95, 389
TspDTI ATGAA 3 cut(s) 225, 843, 969
TspGWI ACGGA 1 cut(s) 156
VneI GTGCAC 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 473
XspI CTAG 2 cut(s) 474, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.