Rorug05G0573400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000418
Physical Location & Seq
Forward (+)
76808020 .. 76808514
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0573400.1

Sequence Viewer

Length: 216 bp
ATGATTGCTGCAATCAAACATATGACCATCAAGAGGGATCAAAAGAAAAATATTCAGGAATTGAAACATAATCTATATGATACAAAAGCAGGAATGAAGTTTCTACAAATGAAGTACCAGGAGGATTTCAACAGCCTAGGTATGCACCTGCATGGTTTGGCTCATGCAGCATCAGGATACCAGAAAGTTCTTGAAGACATCTCAGATGCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.2

Weight (kDa)

9.3

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 45
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 3 cut(s) 64, 130, 194
AjnI CCWGG 1 cut(s) 117
AlwI GGATC 1 cut(s) 45
ApeKI GCWGC 2 cut(s) 8, 167
AspA2I CCTAGG 1 cut(s) 136
AvrII CCTAGG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 119
BciVI GTATCC 1 cut(s) 170
BfaI CTAG 2 cut(s) 137, 210
BfuAI ACCTGC 1 cut(s) 156
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 2 cut(s) 9, 168
BlnI CCTAGG 1 cut(s) 136
BlsI GCNGC 2 cut(s) 10, 169
Bme1390I CCNGG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 179, 196
BpiI GAAGAC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 33
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 215
BspMI ACCTGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 202
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 170
BveI ACCTGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 152, 164
CviJI RGCY 2 cut(s) 135, 161
CviKI_1 RGCY 2 cut(s) 135, 161
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 155, 167
FaiI YATR 8 cut(s) 21, 23, 69, 76, 78, 143, 153, 165
FatI CATG 2 cut(s) 151, 163
FauNDI CATATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 9, 168
Fsp4HI GCNGC 2 cut(s) 9, 168
FspBI CTAG 2 cut(s) 137, 210
GluI GCNGC 2 cut(s) 9, 168
Hin1II CATG 2 cut(s) 155, 167
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 4 cut(s) 31, 56, 174, 191
HpyCH4V TGCA 4 cut(s) 11, 145, 151, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 2 cut(s) 155, 167
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 41, 75, 104, 131, 159, 161, 194
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 2 cut(s) 179, 196
MaeI CTAG 2 cut(s) 137, 210
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 206
MluCI AATT 1 cut(s) 59
MnlI CCTC 2 cut(s) 27, 115
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeI CATATG 1 cut(s) 21
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 155, 167
PaqCI CACCTGC 1 cut(s) 156
PkrI GCNGC 2 cut(s) 10, 169
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 150
SatI GCNGC 2 cut(s) 9, 168
Sau3AI GATC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 119
SetI ASST 3 cut(s) 142, 150, 215
SfaNI GCATC 2 cut(s) 179, 196
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 1 cut(s) 59
SspI AATATT 1 cut(s) 52
SspMI CTAG 2 cut(s) 137, 210
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 136
TasI AATT 1 cut(s) 59
TseI GCWGC 2 cut(s) 8, 167
TspDTI ATGAA 2 cut(s) 110, 125
XmaJI CCTAGG 1 cut(s) 136
XspI CTAG 2 cut(s) 137, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.