FvH4_5g34450
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000418
Physical Location & Seq
Forward (+)
25112019 .. 25112980
962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34450.t1

Sequence Viewer

Length: 609 bp
ATGTCTATGTATTATGGTCTTCGAGTGGGTATGAGATTTCATCCTACTGACAAGGAACTGGTGGGTCACTACCTCCTCAACAGAGCTGTTATGGGTGACCAGTTCCAGACCAAATTCGTCTCCGGTTGTCCTGGCTTCTACGGCCAAAACGAGCCTTGGGTTATTTGGGACCAGTACGGTGGTAATAAATCTGACGATGTAGAGGCTCTCTATTTCTACACACACCGCAAGAAGTTCAATCCAACTGCCAAGTGTTTCGATCTGAAGGTGGGTTCCGGAACTTGGAGAGAGCAGCGTTCAGAAGATGATGTTGACGAGGAGGGTTCAGAAGATGTTGTTGACAAGGATGGCAGTGTTATTGGAATCCGACGAGATTATCAGTATGAAGATGGATGTGATCCCCATCAGAATGGGGCTTGGTTGATGCGAGAGTACCAGATGAAGACTAATACTCACAACAATGACGCTACTGATCAAGAACTTGTACTCTGCGTCTTGAGGAAGAACCCTGAAAAAGTACAACCAACAACAACAACAGCAACAGCTATTGCGAAGAAGAACGGTAATGATGCAGAGGATTGGTGTTCAGGTTCATATACCTATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

203

Amino Acids

23.19

Weight (kDa)

5.03

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 147 9.8e-20 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 4 cut(s) 176, 434, 486, 519
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 86, 545
AluI AGCT 2 cut(s) 86, 545
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 169
BbsI GAAGAC 2 cut(s) 11, 449
BbvI GCAGC 1 cut(s) 304
BccI CCATC 3 cut(s) 341, 383, 411
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 124
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 2 cut(s) 170, 274
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 414, 559
BpiI GAAGAC 2 cut(s) 11, 449
BpuEI CTTGAG 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 2 cut(s) 122, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 3 cut(s) 63, 100, 172
Bse8I GATNNNNATC 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 3 cut(s) 40, 352, 398
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 282
BseNI ACTGG 3 cut(s) 63, 100, 172
BseRI GAGGAG 2 cut(s) 65, 332
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 123, 276
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 3 cut(s) 259, 397, 472
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 275
BspLI GGNNCC 2 cut(s) 170, 274
BspPI GGATC 1 cut(s) 392
BsrI ACTGG 3 cut(s) 63, 100, 172
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 3 cut(s) 259, 397, 472
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 179, 563
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 3 cut(s) 40, 352, 398
BstKTI GATC 3 cut(s) 262, 400, 475
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 259, 397, 472
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 2 cut(s) 11, 449
BstXI CCANNNNNNTGG 2 cut(s) 179, 410
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 3 cut(s) 40, 352, 398
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 169
CseI GACGC 2 cut(s) 473, 481
Csp6I GTAC 4 cut(s) 175, 433, 485, 518
CviJI RGCY 7 cut(s) 86, 135, 144, 154, 206, 416, 545
CviKI_1 RGCY 7 cut(s) 86, 135, 144, 154, 206, 416, 545
CviQI GTAC 4 cut(s) 175, 433, 485, 518
DpnI GATC 3 cut(s) 261, 399, 474
DpnII GATC 3 cut(s) 259, 397, 472
EaeI YGGCCR 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
Esp3I CGTCTC 1 cut(s) 124
FaqI GGGAC 1 cut(s) 182
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 3 cut(s) 27, 359, 405
Fsp4HI GCNGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 123, 276
HgaI GACGC 2 cut(s) 473, 481
HincII GTYRAC 2 cut(s) 313, 340
HindII GTYRAC 2 cut(s) 313, 340
HinfI GANTC 1 cut(s) 363
HpaII CCGG 2 cut(s) 123, 276
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 313, 340
Hpy188I TCNGA 6 cut(s) 193, 264, 301, 328, 368, 408
Hpy188III TCNNGA 4 cut(s) 106, 276, 476, 496
Hpy8I GTNNAC 2 cut(s) 313, 340
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 2 cut(s) 179, 563
HpyCH4V TGCA 1 cut(s) 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
Kpn2I TCCGGA 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 3 cut(s) 259, 397, 472
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 414, 559
MaeIII GTNAC 2 cut(s) 65, 95
MalI GATC 3 cut(s) 261, 399, 474
MboI GATC 3 cut(s) 259, 397, 472
MboII GAAGA 8 cut(s) 11, 314, 341, 398, 454, 514, 565, 568
MluCI AATT 1 cut(s) 113
MmeI TCCRAC 2 cut(s) 266, 391
MnlI CCTC 7 cut(s) 83, 86, 196, 310, 313, 492, 568
MroI TCCGGA 1 cut(s) 275
MslI CAYNNNNRTG 2 cut(s) 408, 459
MspI CCGG 2 cut(s) 123, 276
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 3 cut(s) 259, 397, 472
NlaIV GGNNCC 2 cut(s) 170, 274
NmuCI GTSAC 2 cut(s) 65, 95
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 170, 274
PspPI GGNCC 1 cut(s) 169
RsaI GTAC 4 cut(s) 176, 434, 486, 519
RsaNI GTAC 4 cut(s) 175, 433, 485, 518
RseI CAYNNNNRTG 2 cut(s) 408, 459
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 3 cut(s) 259, 397, 472
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 132
SetI ASST 6 cut(s) 75, 88, 270, 547, 592, 602
SfaNI GCATC 2 cut(s) 414, 559
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 2 cut(s) 408, 459
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 1 cut(s) 113
SsiI CCGC 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 179, 563
TaqI TCGA 2 cut(s) 22, 258
TasI AATT 1 cut(s) 113
TatI WGTACW 2 cut(s) 484, 517
TfiI GAWTC 1 cut(s) 363
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 65, 95
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 2 cut(s) 65, 95
TspDTI ATGAA 4 cut(s) 29, 399, 455, 582
TspRI CASTG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.