Rh3AG060600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000418
Physical Location & Seq
Forward (+)
4199489 .. 4200595
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG060600.1

Sequence Viewer

Length: 1005 bp
ATGAATATAGCGCCAACAATGCAAAGGTATCCGAAGGGCATGAGGTTTCATCCTACAGACTTGGAACTCGTTGATTATTTCCTCCACAACAAGGCCGATGCCGATGAGAAGGGTTGTTACTCCAGCTTAATCTACGAATGTAATGATTTTTATGGTGAAAAAGAGCCGTGGGTTATTTGGGACATGTATGGGGGTTCTACATATGAGGAAGGAGAACCCCTCTACTTCTACACCAAGCGCATCAAACAGAATAGTAATGGCAAACGCTTTGCTCGGAAGGTAGGCTCCGGTACATGGAGTGGAGAGTACTCGAAAGAGGTTCTTGCTGCCGATGATGGTAAGACCAAAATTGGGACAATGAGGAACTTTCGCTACGAGAAGGGATGTGATTCTTGTCAAAACGGTGCATGGCTCATGCACGAGTACGAGAGTGAGTTCGAGAAGAACGGGGAAGATGATTATGTAATTTGCGTTTTGAGAAAAAATCCAAGAAAAGTTCCAGCACTACTACGACCTGATCAGAGAGATATTGAAAGTACAAAGAAGAGTAGTGTCAATGACAAAAAGAGAAAGAGGATGAAGTCGGACGACGTTGTTGATCATCAACAGAGAAAGCTGAAAAAGCAACTAAAGGATGATCGTGAACTGATAAAGATCGAAGAGGAAGAAAGAAAGGAAGAGAGTTACGACGAACAAGGCCGTAGCAGTTGTACGCAGCTGCTCTATCATCATGATCAGGATGATAATAATTATTCTGATAATCATAATTTTTATTCGGATTATTATTTTCCAGAGCTCCTTGGCAATAATTATGATGATGGTGTCACTATAGACGAACTCATTGGACCAATTTCAGATGATTCTGTATACTACAAGTCCATCCCATTTCAGGATCAGTTATATCACGGAGACGATGACAGCTTCAACTTCGTAGATTACTCGGATGGAGAGGTGTCACAGCTGCCTAACGATGAACACACTGTTGATTACCTGGGGAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

334

Amino Acids

39.21

Weight (kDa)

4.85

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 143 5.6e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 867
AclWI GGATC 1 cut(s) 900
AfaI GTAC 5 cut(s) 292, 308, 425, 538, 712
AfiI CCNNNNNNNGG 4 cut(s) 91, 294, 351, 889
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 2 cut(s) 533, 925
AjnI CCWGG 1 cut(s) 990
AluBI AGCT 6 cut(s) 126, 616, 718, 796, 921, 961
AluI AGCT 6 cut(s) 126, 616, 718, 796, 921, 961
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 1 cut(s) 903
AlwI GGATC 1 cut(s) 900
AoxI GGCC 2 cut(s) 93, 697
ApeKI GCWGC 4 cut(s) 326, 715, 718, 961
AspLEI GCGC 2 cut(s) 13, 240
AspS9I GGNCC 1 cut(s) 845
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 845
BanII GRGCYC 1 cut(s) 798
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BauI CACGAG 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 4 cut(s) 313, 705, 727, 948
BccI CCATC 4 cut(s) 329, 812, 887, 938
BceAI ACGGC 2 cut(s) 151, 684
BciT130I CCWGG 1 cut(s) 992
BciVI GTATCC 1 cut(s) 39
BclI TGATCA 3 cut(s) 517, 598, 733
BcoDI GTCTC 1 cut(s) 903
BfmI CTRYAG 2 cut(s) 54, 828
BfoI RGCGCY 1 cut(s) 14
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 4 cut(s) 327, 716, 719, 962
BlsI GCNGC 4 cut(s) 328, 717, 720, 963
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 992
Bme18I GGWCC 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 845
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 992
BmsI GCATC 2 cut(s) 88, 249
BplI GAGNNNNNCTC 2 cut(s) 204, 236
BpmI CTGGAG 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 167, 799, 991
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 4 cut(s) 91, 294, 351, 889
Bse8I GATNNNNATC 1 cut(s) 653
BseBI CCWGG 1 cut(s) 992
BseDI CCNNGG 3 cut(s) 167, 799, 991
BseGI GGATG 7 cut(s) 49, 389, 582, 640, 745, 879, 949
BseJI GATNNNNATC 1 cut(s) 653
BseLI CCNNNNNNNGG 4 cut(s) 91, 294, 351, 889
BseXI GCAGC 4 cut(s) 313, 705, 727, 948
BshFI GGCC 2 cut(s) 95, 699
BsiHKAI GWGCWC 1 cut(s) 798
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 2 cut(s) 194, 367
BslI CCNNNNNNNGG 4 cut(s) 91, 294, 351, 889
BsmAI GTCTC 1 cut(s) 903
BsmBI CGTCTC 1 cut(s) 903
BsmFI GGGAC 2 cut(s) 194, 367
BsnI GGCC 2 cut(s) 95, 699
Bsp1286I GDGCHC 1 cut(s) 798
Bsp143I GATC 6 cut(s) 517, 598, 637, 654, 733, 892
BspANI GGCC 2 cut(s) 95, 699
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 1 cut(s) 286
BspPI GGATC 1 cut(s) 900
BssECI CCNNGG 3 cut(s) 167, 799, 991
BssMI GATC 6 cut(s) 517, 598, 637, 654, 733, 892
BssNAI GTATAC 1 cut(s) 868
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 799
Bst1107I GTATAC 1 cut(s) 868
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 992
Bst4CI ACNGT 2 cut(s) 404, 982
Bst6I CTCTTC 3 cut(s) 539, 654, 672
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 7 cut(s) 49, 389, 582, 640, 745, 879, 949
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 240
BstKTI GATC 6 cut(s) 520, 601, 640, 657, 736, 895
BstMAI GTCTC 1 cut(s) 903
BstMBI GATC 6 cut(s) 517, 598, 637, 654, 733, 892
BstMWI GCNNNNNNNGC 2 cut(s) 19, 622
BstNI CCWGG 1 cut(s) 992
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 990
BstSFI CTRYAG 2 cut(s) 54, 828
BstV1I GCAGC 4 cut(s) 313, 705, 727, 948
BstZ17I GTATAC 1 cut(s) 868
BsuI GTATCC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 95, 699
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 7 cut(s) 49, 389, 582, 640, 745, 879, 949
BtsIMutI CAGTG 1 cut(s) 978
CciI TCATGA 1 cut(s) 730
CfoI GCGC 2 cut(s) 13, 240
Cfr13I GGNCC 1 cut(s) 845
Csp6I GTAC 5 cut(s) 291, 307, 424, 537, 711
CviAII CATG 6 cut(s) 40, 184, 294, 408, 415, 731
CviQI GTAC 5 cut(s) 291, 307, 424, 537, 711
DpnI GATC 6 cut(s) 519, 600, 639, 656, 735, 894
DpnII GATC 6 cut(s) 517, 598, 637, 654, 733, 892
Eam1104I CTCTTC 3 cut(s) 539, 654, 672
EarI CTCTTC 3 cut(s) 539, 654, 672
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 845
Eco53kI GAGCTC 1 cut(s) 796
EcoICRI GAGCTC 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 990
EcoT14I CCWWGG 1 cut(s) 799
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 799
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 6 cut(s) 43, 187, 297, 411, 418, 734
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FaqI GGGAC 2 cut(s) 194, 367
FatI CATG 6 cut(s) 39, 183, 293, 407, 414, 730
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 3 cut(s) 517, 598, 733
FblI GTMKAC 1 cut(s) 867
Fnu4HI GCNGC 4 cut(s) 327, 716, 719, 962
FokI GGATG 7 cut(s) 36, 396, 589, 647, 752, 866, 956
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 4 cut(s) 327, 716, 719, 962
GlaI GCGC 2 cut(s) 12, 239
GluI GCNGC 4 cut(s) 327, 716, 719, 962
GsuI CTGGAG 1 cut(s) 106
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 2 cut(s) 95, 699
HapII CCGG 1 cut(s) 288
HhaI GCGC 2 cut(s) 13, 240
Hin1II CATG 6 cut(s) 43, 187, 297, 411, 418, 734
Hin6I GCGC 2 cut(s) 11, 238
HinP1I GCGC 2 cut(s) 11, 238
HinfI GANTC 2 cut(s) 389, 860
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 644, 868
Hpy188I TCNGA 8 cut(s) 33, 276, 522, 586, 757, 778, 856, 943
Hpy188III TCNNGA 6 cut(s) 439, 641, 731, 737, 791, 890
Hpy8I GTNNAC 2 cut(s) 644, 868
Hpy99I CGWCG 2 cut(s) 593, 692
HpyAV CCTTC 5 cut(s) 28, 103, 203, 271, 373
HpyCH4III ACNGT 2 cut(s) 404, 982
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 3 cut(s) 22, 407, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 622
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 6 cut(s) 43, 187, 297, 411, 418, 734
HspAI GCGC 2 cut(s) 11, 238
Ksp22I TGATCA 3 cut(s) 517, 598, 733
Kzo9I GATC 6 cut(s) 517, 598, 637, 654, 733, 892
LmnI GCTCC 2 cut(s) 290, 801
LpnPI CCDG 8 cut(s) 136, 301, 513, 528, 722, 804, 875, 977
Lsp1109I GCAGC 4 cut(s) 313, 705, 727, 948
LweI GCATC 2 cut(s) 88, 249
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 4 cut(s) 116, 683, 823, 954
MalI GATC 6 cut(s) 519, 600, 639, 656, 735, 894
MboI GATC 6 cut(s) 517, 598, 637, 654, 733, 892
MboII GAAGA 6 cut(s) 454, 464, 556, 671, 677, 689
MhlI GDGCHC 1 cut(s) 798
MluCI AATT 6 cut(s) 348, 465, 748, 766, 808, 849
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 9 cut(s) 36, 92, 199, 230, 310, 354, 567, 655, 943
MseI TTAA 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 718, 961
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 992
MvaI CCWGG 1 cut(s) 992
MwoI GCNNNNNNNGC 2 cut(s) 19, 622
NdeI CATATG 1 cut(s) 202
NdeII GATC 6 cut(s) 517, 598, 637, 654, 733, 892
NlaIII CATG 6 cut(s) 43, 187, 297, 411, 418, 734
NlaIV GGNNCC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 823, 954
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 730
PciI ACATGT 1 cut(s) 183
PfeI GAWTC 2 cut(s) 389, 860
PkrI GCNGC 4 cut(s) 328, 717, 720, 963
PscI ACATGT 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 990
PspGI CCWGG 1 cut(s) 990
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 845
PsrI GAACNNNNNNTAC 2 cut(s) 356, 388
PvuII CAGCTG 2 cut(s) 718, 961
RsaI GTAC 5 cut(s) 292, 308, 425, 538, 712
RsaNI GTAC 5 cut(s) 291, 307, 424, 537, 711
SacI GAGCTC 1 cut(s) 798
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 4 cut(s) 327, 716, 719, 962
Sau3AI GATC 6 cut(s) 517, 598, 637, 654, 733, 892
Sau96I GGNCC 1 cut(s) 845
ScaI AGTACT 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 992
SduI GDGCHC 1 cut(s) 798
SfaNI GCATC 2 cut(s) 88, 249
SfcI CTRYAG 2 cut(s) 54, 828
SinI GGWCC 1 cut(s) 845
Sse9I AATT 6 cut(s) 348, 465, 748, 766, 808, 849
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 1 cut(s) 990
StyI CCWWGG 1 cut(s) 799
TaaI ACNGT 2 cut(s) 404, 982
TaiI ACGT 1 cut(s) 594
TaqI TCGA 3 cut(s) 311, 438, 657
TasI AATT 6 cut(s) 348, 465, 748, 766, 808, 849
TatI WGTACW 2 cut(s) 306, 536
TfiI GAWTC 2 cut(s) 389, 860
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TscAI CASTG 1 cut(s) 985
TseFI GTSAC 2 cut(s) 823, 954
TseI GCWGC 4 cut(s) 326, 715, 718, 961
Tsp45I GTSAC 2 cut(s) 823, 954
TspDTI ATGAA 4 cut(s) 17, 38, 593, 987
TspGWI ACGGA 1 cut(s) 921
TspRI CASTG 1 cut(s) 985
VpaK11BI GGWCC 1 cut(s) 845
XceI RCATGY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 867
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.