Rmu_sc0006413.1_g000005
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006413.1
OG0000418
Physical Location & Seq
Reverse (-)
32057 .. 32590
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006413.1_g000005.1.cds

Sequence Viewer

Length: 534 bp
atgggttgtccgttcaggtacaggtttcatcccacagatgaagaacttgtgggttactttctccagcaaagggccaggatgggcaatcaattccactcgaatgaggtctctgagtattcggagttttacggccaagaagaaccctgggttgtttgggacaagaacggtggttctagcgtggatgatggagagcctctctttttcttcaccaaacgcaagaagttgaaccccaatggcaagcggtttgatcgcaaagtaggcttaggaacatggagcgtgcagttttcgagagaggttgtggtccaggatagagacaccggatgtcgtattaccaggatgaggagggaatttagttacgagggtggctgtgatcctgaacaaaacaactcttggttgatgcatgagtacgagttgtgtaccactgatgtcttggtgttgtgcaccttgaagaagaacccaagaaaagctagtagcgctcagaccaatggtaagaagaggaagaggattgttgataatcacacaaatcacgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

177

Amino Acids

20.77

Weight (kDa)

8.8

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 241
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 3 cut(s) 20, 407, 418
AfeI AGCGCT 1 cut(s) 475
AfiI CCNNNNNNNGG 2 cut(s) 70, 339
AgsI TTSAA 2 cut(s) 226, 448
AjnI CCWGG 4 cut(s) 74, 143, 303, 332
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 2 cut(s) 112, 306
Alw44I GTGCAC 1 cut(s) 439
AlwI GGATC 1 cut(s) 365
Aor51HI AGCGCT 1 cut(s) 475
AoxI GGCC 2 cut(s) 72, 130
ApaLI GTGCAC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 2 cut(s) 72, 301
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 443
BccI CCATC 2 cut(s) 73, 179
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 4 cut(s) 76, 145, 305, 334
BcoDI GTCTC 2 cut(s) 112, 306
BfaI CTAG 2 cut(s) 174, 468
BfoI RGCGCY 1 cut(s) 477
Bme1390I CCNGG 4 cut(s) 76, 145, 305, 334
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 2 cut(s) 72, 301
BmrFI CCNGG 4 cut(s) 76, 145, 305, 334
BmsI GCATC 1 cut(s) 387
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 143, 144
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 339
BseBI CCWGG 4 cut(s) 76, 145, 305, 334
BseDI CCNNGG 2 cut(s) 143, 144
BseGI GGATG 5 cut(s) 28, 84, 187, 326, 342
BseLI CCNNNNNNNGG 2 cut(s) 70, 339
BseMII CTCAG 2 cut(s) 102, 491
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 299
BshFI GGCC 2 cut(s) 74, 132
BsiHKAI GWGCWC 1 cut(s) 443
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 70, 339
BsmAI GTCTC 2 cut(s) 112, 306
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 2 cut(s) 74, 132
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 2 cut(s) 247, 370
BspACI CCGC 1 cut(s) 241
BspANI GGCC 2 cut(s) 74, 132
BspCNI CTCAG 2 cut(s) 103, 490
BspPI GGATC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 143, 144
BssMI GATC 2 cut(s) 247, 370
Bst2UI CCWGG 4 cut(s) 76, 145, 305, 334
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 2 cut(s) 488, 494
BstC8I GCNNGC 2 cut(s) 239, 278
BstDEI CTNAG 3 cut(s) 111, 262, 477
BstF5I GGATG 5 cut(s) 28, 84, 187, 326, 342
BstH2I RGCGCY 1 cut(s) 477
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 2 cut(s) 250, 373
BstMAI GTCTC 2 cut(s) 112, 306
BstMBI GATC 2 cut(s) 247, 370
BstMWI GCNNNNNNNGC 2 cut(s) 258, 473
BstNI CCWGG 4 cut(s) 76, 145, 305, 334
BstSCI CCNGG 4 cut(s) 74, 143, 303, 332
BstSLI GKGCMC 1 cut(s) 443
BsuRI GGCC 2 cut(s) 74, 132
BtsCI GGATG 5 cut(s) 28, 84, 187, 326, 342
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 239, 278
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 72, 301
Csp6I GTAC 3 cut(s) 19, 406, 417
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 2 cut(s) 270, 401
CviJI RGCY 6 cut(s) 74, 132, 193, 261, 366, 467
CviKI_1 RGCY 6 cut(s) 74, 132, 193, 261, 366, 467
CviQI GTAC 3 cut(s) 19, 406, 417
DdeI CTNAG 3 cut(s) 111, 262, 477
DpnI GATC 2 cut(s) 249, 372
DpnII GATC 2 cut(s) 247, 370
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 488, 494
EarI CTCTTC 2 cut(s) 488, 494
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 301
Eco47III AGCGCT 1 cut(s) 475
EcoRII CCWGG 4 cut(s) 74, 143, 303, 332
EcoT22I ATGCAT 1 cut(s) 402
FaeI CATG 2 cut(s) 273, 404
FaiI YATR 2 cut(s) 271, 402
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 269, 400
FokI GGATG 5 cut(s) 15, 91, 194, 333, 349
FspBI CTAG 2 cut(s) 174, 468
GlaI GCGC 1 cut(s) 475
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 477
HaeIII GGCC 2 cut(s) 74, 132
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 476
Hin1II CATG 2 cut(s) 273, 404
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 417, 441
Hpy188I TCNGA 3 cut(s) 112, 121, 480
Hpy188III TCNNGA 2 cut(s) 288, 374
Hpy8I GTNNAC 2 cut(s) 417, 441
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 280, 400, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 473
HpyF3I CTNAG 3 cut(s) 111, 262, 477
HpySE526I ACGT 1 cut(s) 528
Hsp92II CATG 2 cut(s) 273, 404
HspAI GCGC 1 cut(s) 474
Kzo9I GATC 2 cut(s) 247, 370
LmnI GCTCC 1 cut(s) 273
LweI GCATC 1 cut(s) 387
MaeI CTAG 2 cut(s) 174, 468
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 53, 353
MalI GATC 2 cut(s) 249, 372
MboI GATC 2 cut(s) 247, 370
MboII GAAGA 7 cut(s) 53, 149, 196, 460, 463, 505, 511
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 2 cut(s) 89, 347
MnlI CCTC 8 cut(s) 97, 204, 286, 333, 336, 352, 489, 495
Mph1103I ATGCAT 1 cut(s) 402
MseI TTAA 1 cut(s) 532
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 4 cut(s) 76, 145, 305, 334
MvaI CCWGG 4 cut(s) 76, 145, 305, 334
MwoI GCNNNNNNNGC 2 cut(s) 258, 473
NdeII GATC 2 cut(s) 247, 370
NlaIII CATG 2 cut(s) 273, 404
NsiI ATGCAT 1 cut(s) 402
PasI CCCWGGG 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 303
Psp6I CCWGG 4 cut(s) 74, 143, 303, 332
PspGI CCWGG 4 cut(s) 74, 143, 303, 332
PspPI GGNCC 2 cut(s) 72, 301
RsaI GTAC 3 cut(s) 20, 407, 418
RsaNI GTAC 3 cut(s) 19, 406, 417
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 532
Sau3AI GATC 2 cut(s) 247, 370
Sau96I GGNCC 2 cut(s) 72, 301
ScrFI CCNGG 4 cut(s) 76, 145, 305, 334
SduI GDGCHC 1 cut(s) 443
SetI ASST 7 cut(s) 20, 26, 108, 297, 446, 469, 531
SfaNI GCATC 1 cut(s) 387
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 2 cut(s) 89, 347
SsiI CCGC 1 cut(s) 241
SspMI CTAG 2 cut(s) 174, 468
StyD4I CCNGG 4 cut(s) 74, 143, 303, 332
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 531
TaqI TCGA 2 cut(s) 98, 287
TasI AATT 2 cut(s) 89, 347
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TscAI CASTG 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 17, 54
TspRI CASTG 1 cut(s) 427
VneI GTGCAC 1 cut(s) 439
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XspI CTAG 2 cut(s) 174, 468
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.