Rw1G011300

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000418
Physical Location & Seq
Forward (+)
25463042 .. 25464010
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011300.1

Sequence Viewer

Length: 969 bp
ATGGTTGATCAGTTTCGCTCGAGTCCAATCCTTGATTGCCCTGACTTCTATGGCAAAAATGAGCCCTGGCTCATTTGGGACATGTTCCGTGCCCAATCCAACAATATGAAAGAGGAAGAAACTCTGTATTTCTTTACTCACCGCAAGAAATTGAATCCCAAAGCCAAAAAATTTGATAGAAAAGTGGGATCGGGAACATGGAGTGCCCAATATTCAAAAAATGTTGTTGCTGCTGATGATGACACTGTTGTTGGAATTAAGAGAGAATTTCGGTATGAGGGTGGATCTGATCCACATCAAAATGGGGCTTGGTTGATGCAGGAGTACGAGATCACATCTCACAATGATCTCGTACTCTGCACCCTCAGAAAGAACCCCAGAAAACTTCCACCCCCAACTTCTCCTGCTCCTCTGAATCAGAGCCACATTATTATTAGCAACAAAAGGAAGATGAAATTCAGTGAGGATGAGGAGGATATAAACACAAAGACAGAGACTTTCAAAAGAAAAAAAATGGAACCTCCTAAACAAAAACAACAACTAATGTTGCCCTCTACCTCTTGCTTGTTTGAGCAGCAGTTTGATCAATCTAAAATATTGTTTGATATCGATGACCTCTGTTATATTGATGATCAGCAGGAGAGCAATGATGATCTCATGGCTTCATTTGCTCCATCATTTGTTACTGATGATCAGCTTGAGGTTGTTGAGGTTGAGAAGGAGGGCAGTAATGATGATCTCATGGCCTTAGCTGGTCAACCGTTATCTGCTAGTGATGATCAGATTCAAACTGTTCAGGTCGACGAGACCAATAATTCCATTACTAATTCTCCTAATGATACTTCATATCCGTATTTTGATCCTGAAGTTGAGGCATTCTTTGGCTTGACTACTGATGATATATACGATGATGATGACTGTCAGTTTTCAAGTTCTGAAATACAGGCATTCTTAGCTTGTCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

322

Amino Acids

36.97

Weight (kDa)

4.46

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 110 3.6e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 801
AciI CCGC 1 cut(s) 142
AclWI GGATC 4 cut(s) 196, 284, 292, 854
AcsI RAATTY 3 cut(s) 170, 266, 455
AcuI CTGAAG 1 cut(s) 885
AfaI GTAC 2 cut(s) 326, 354
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 5 cut(s) 154, 216, 502, 788, 930
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 3 cut(s) 697, 752, 956
AluI AGCT 3 cut(s) 697, 752, 956
Alw26I GTCTC 2 cut(s) 488, 800
AlwI GGATC 4 cut(s) 196, 284, 292, 854
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 1 cut(s) 744
ApeKI GCWGC 2 cut(s) 230, 574
ApoI RAATTY 3 cut(s) 170, 266, 455
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 19
BaeGI GKGCMC 2 cut(s) 94, 208
BanII GRGCYC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 217, 586
BccI CCATC 1 cut(s) 682
BciT130I CCWGG 1 cut(s) 67
BclI TGATCA 5 cut(s) 7, 583, 631, 691, 778
BcoDI GTCTC 2 cut(s) 488, 800
BfaI CTAG 1 cut(s) 771
BisI GCNGC 2 cut(s) 231, 575
BlsI GCNGC 2 cut(s) 232, 576
Bme1390I CCNGG 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 748
BpuEI CTTGAG 1 cut(s) 719
Bsa29I ATCGAT 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 814, 844
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 1 cut(s) 67
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 472
BseJI GATNNNNATC 1 cut(s) 294
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 1 cut(s) 379
BseRI GAGGAG 2 cut(s) 399, 485
BseSI GKGCMC 2 cut(s) 94, 208
BseXI GCAGC 2 cut(s) 217, 586
BsgI GTGCAG 1 cut(s) 343
BshFI GGCC 1 cut(s) 746
BshVI ATCGAT 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 488, 800
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 2 cut(s) 875, 947
BsnI GGCC 1 cut(s) 746
Bso31I GGTCTC 1 cut(s) 800
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 3 cut(s) 66, 94, 208
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 746
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 519
BspPI GGATC 4 cut(s) 196, 284, 292, 854
BspTNI GGTCTC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 652
BssECI CCNNGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 4 cut(s) 247, 762, 793, 920
BstDEI CTNAG 3 cut(s) 365, 748, 952
BstF5I GGATG 1 cut(s) 472
BstMAI GTCTC 2 cut(s) 488, 800
BstMWI GCNNNNNNNGC 2 cut(s) 668, 953
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 65
BstSLI GKGCMC 2 cut(s) 94, 208
BstV1I GCAGC 2 cut(s) 217, 586
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 609
BsuRI GGCC 1 cut(s) 746
BsuTUI ATCGAT 1 cut(s) 609
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 2 cut(s) 243, 466
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 2 cut(s) 325, 353
CviAII CATG 4 cut(s) 82, 198, 658, 742
CviQI GTAC 2 cut(s) 325, 353
DdeI CTNAG 3 cut(s) 365, 748, 952
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 800
Eco32I GATATC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 885
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 65
EcoRV GATATC 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 4 cut(s) 85, 201, 661, 745
FaqI GGGAC 1 cut(s) 92
FatI CATG 4 cut(s) 81, 197, 657, 741
FbaI TGATCA 5 cut(s) 7, 583, 631, 691, 778
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 2 cut(s) 231, 575
FokI GGATG 1 cut(s) 479
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 231, 575
FspBI CTAG 1 cut(s) 771
GluI GCNGC 2 cut(s) 231, 575
HaeIII GGCC 1 cut(s) 746
Hin1II CATG 4 cut(s) 85, 201, 661, 745
HincII GTYRAC 2 cut(s) 758, 802
HindII GTYRAC 2 cut(s) 758, 802
HinfI GANTC 4 cut(s) 22, 154, 415, 784
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 758, 802
Hpy188I TCNGA 6 cut(s) 289, 368, 414, 420, 783, 937
Hpy188III TCNNGA 3 cut(s) 192, 863, 962
Hpy8I GTNNAC 2 cut(s) 758, 802
Hpy99I CGWCG 1 cut(s) 806
HpyAV CCTTC 1 cut(s) 712
HpyCH4III ACNGT 4 cut(s) 247, 762, 793, 920
HpyCH4V TGCA 2 cut(s) 319, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 953
HpyF3I CTNAG 3 cut(s) 365, 748, 952
Hsp92II CATG 4 cut(s) 85, 201, 661, 745
Ksp22I TGATCA 5 cut(s) 7, 583, 631, 691, 778
LmnI GCTCC 2 cut(s) 412, 676
Lsp1109I GCAGC 2 cut(s) 217, 586
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 771
MaeIII GTNAC 1 cut(s) 682
MboII GAAGA 2 cut(s) 128, 460
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 3 cut(s) 66, 94, 208
MluCI AATT 7 cut(s) 149, 170, 255, 266, 455, 814, 826
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 123, 232
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 67
Mva1269I GAATGC 2 cut(s) 875, 947
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 668, 953
NlaIII CATG 4 cut(s) 85, 201, 661, 745
NlaIV GGNNCC 1 cut(s) 519
NspI RCATGY 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 19
PciI ACATGT 1 cut(s) 81
PctI GAATGC 2 cut(s) 875, 947
PfeI GAWTC 3 cut(s) 154, 415, 784
PkrI GCNGC 2 cut(s) 232, 576
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PscI ACATGT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 519
PspXI VCTCGAGB 1 cut(s) 19
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 2 cut(s) 326, 354
RsaNI GTAC 2 cut(s) 325, 353
RseI CAYNNNNRTG 1 cut(s) 300
SalI GTCGAC 1 cut(s) 800
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 231, 575
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 3 cut(s) 66, 94, 208
SetI ASST 9 cut(s) 523, 560, 618, 699, 705, 714, 754, 801, 958
SfaNI GCATC 1 cut(s) 306
Sfr274I CTCGAG 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 19, 698
SmoI CTYRAG 2 cut(s) 19, 698
Sse9I AATT 7 cut(s) 149, 170, 255, 266, 455, 814, 826
SsiI CCGC 1 cut(s) 142
SspI AATATT 2 cut(s) 212, 597
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 4 cut(s) 247, 762, 793, 920
TaqI TCGA 3 cut(s) 20, 609, 801
TasI AATT 7 cut(s) 149, 170, 255, 266, 455, 814, 826
TfiI GAWTC 3 cut(s) 154, 415, 784
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 2 cut(s) 250, 466
TseI GCWGC 2 cut(s) 230, 574
TspDTI ATGAA 4 cut(s) 122, 467, 654, 834
TspGWI ACGGA 2 cut(s) 77, 840
TspRI CASTG 2 cut(s) 250, 466
XapI RAATTY 3 cut(s) 170, 266, 455
XceI RCATGY 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.