Rh6BG161000
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000418
Physical Location & Seq
Reverse (-)
26102794 .. 26104043
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG161000.1

Sequence Viewer

Length: 942 bp
ATGGGTTGTCCGATCGGGTACAGGTTTCATCCCACAGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATCCGGAGTTTTACGGCCAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGAAGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGCAAAGTAGGCTCTGGAACGTGGAGCGGGCAGTTTGCCAGAGAGGTTGTGGCCGCGGATAGAGACACCGGATGTCATATTACTGGGATTAGGAGGGAATTTAGGTACGAGGGTGGGTGTGATCCTGAACAAAACAACTCTTGGTTGATGCAAGAGTTCGAATTGTGTCCCATTGATGCCTTGGTGTTGTGTACCTTGAAGAAGAACCCAAGAAAAGCTGCTCCGACCAATGGTAAGAAGAGGAAGATGATTGTTGATGATAATCAACCGAGAAAAACCAAGGCAGTGAGATCGGGAAAGGCTGAGACTTGTGAGGAACAACAATCCACCATCTGTGTCGATCTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAGTTGTTGCAAGTTGTTGATGAAGAGCTCTATCCCGAGTTATATCTTGATAATGGGCCTCTTTTTTCTATGGAGGAACTTCTTGCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTCATGATCAATTTCAGGATCATTCATATGATGAAGACAATAGCTTCCTGAGTTTCCTATCCACTGAATTTCAACAACAGTTAGGCGAAGACAACAACTACAGCTTTGTATCCAGTGATCTATACTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

313

Amino Acids

35.99

Weight (kDa)

4.66

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 137 3.6e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AccII CGCG 1 cut(s) 302
AccIII TCCGGA 2 cut(s) 118, 727
AciI CCGC 4 cut(s) 238, 273, 300, 302
AclWI GGATC 5 cut(s) 362, 725, 738, 780, 816
AcoI YGGCCR 2 cut(s) 130, 297
AcsI RAATTY 2 cut(s) 344, 857
AfaI GTAC 3 cut(s) 20, 353, 439
AfiI CCNNNNNNNGG 2 cut(s) 70, 476
AgsI TTSAA 3 cut(s) 223, 445, 863
AjnI CCWGG 2 cut(s) 74, 140
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 4 cut(s) 464, 649, 834, 894
AluI AGCT 4 cut(s) 464, 649, 834, 894
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 5 cut(s) 303, 545, 590, 765, 771
AlwI GGATC 5 cut(s) 362, 725, 738, 780, 816
Ama87I CYCGRG 1 cut(s) 656
Aor13HI TCCGGA 2 cut(s) 118, 727
AoxI GGCC 4 cut(s) 72, 130, 297, 677
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 344, 857
AspS9I GGNCC 2 cut(s) 72, 677
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 405
AvaI CYCGRG 1 cut(s) 656
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BamHI GGATCC 1 cut(s) 730
BanII GRGCYC 1 cut(s) 651
BbsI GAAGAC 2 cut(s) 831, 885
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 451
BccI CCATC 3 cut(s) 73, 176, 584
BceAI ACGGC 1 cut(s) 145
BcgI CGANNNNNNTGC 2 cut(s) 519, 553
BciT130I CCWGG 2 cut(s) 76, 142
BciVI GTATCC 2 cut(s) 126, 910
BclI TGATCA 1 cut(s) 796
BcoDI GTCTC 5 cut(s) 303, 545, 590, 765, 771
BfmI CTRYAG 1 cut(s) 889
BfuI GTATCC 2 cut(s) 126, 910
BglII AGATCT 1 cut(s) 105
BisI GCNGC 2 cut(s) 300, 465
BlsI GCNGC 2 cut(s) 301, 466
Bme1390I CCNGG 2 cut(s) 76, 142
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 2 cut(s) 72, 677
BmiI GGNNCC 2 cut(s) 169, 732
BmrFI CCNGG 2 cut(s) 76, 142
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 2 cut(s) 384, 412
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 2 cut(s) 831, 885
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 590
BsaJI CCNNGG 5 cut(s) 140, 141, 300, 426, 525
BsaWI WCCGGW 3 cut(s) 118, 314, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 476
Bse1I ACTGG 2 cut(s) 334, 903
Bse8I GATNNNNATC 1 cut(s) 507
BseAI TCCGGA 2 cut(s) 118, 727
BseBI CCWGG 2 cut(s) 76, 142
BseDI CCNNGG 5 cut(s) 140, 141, 300, 426, 525
BseGI GGATG 3 cut(s) 28, 84, 323
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 70, 476
BseMII CTCAG 4 cut(s) 540, 776, 782, 830
BseNI ACTGG 2 cut(s) 334, 903
BseXI GCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 302
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 74, 132, 299, 679
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 651
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 3 cut(s) 119, 315, 728
BslFI GGGAC 2 cut(s) 167, 399
BslI CCNNNNNNNGG 2 cut(s) 70, 476
BsmAI GTCTC 5 cut(s) 303, 545, 590, 765, 771
BsmFI GGGAC 2 cut(s) 167, 399
BsnI GGCC 4 cut(s) 74, 132, 299, 679
Bso31I GGTCTC 1 cut(s) 590
BsoBI CYCGRG 1 cut(s) 656
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 651
Bsp13I TCCGGA 2 cut(s) 118, 727
BspACI CCGC 4 cut(s) 238, 273, 300, 302
BspANI GGCC 4 cut(s) 74, 132, 299, 679
BspCNI CTCAG 4 cut(s) 541, 775, 781, 831
BspEI TCCGGA 2 cut(s) 118, 727
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 2 cut(s) 169, 732
BspPI GGATC 5 cut(s) 362, 725, 738, 780, 816
BspQI GCTCTTC 1 cut(s) 639
BspT104I TTCGAA 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 590
BsrBI CCGCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 334, 903
BssECI CCNNGG 5 cut(s) 140, 141, 300, 426, 525
BssT1I CCWWGG 2 cut(s) 426, 525
Bst2UI CCWGG 2 cut(s) 76, 142
Bst4CI ACNGT 2 cut(s) 164, 870
Bst6I CTCTTC 4 cut(s) 479, 588, 639, 741
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 236, 275
BstDEI CTNAG 4 cut(s) 549, 762, 768, 839
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 28, 84, 323
BstFNI CGCG 1 cut(s) 302
BstMAI GTCTC 5 cut(s) 303, 545, 590, 765, 771
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNI CCWGG 2 cut(s) 76, 142
BstSCI CCNGG 2 cut(s) 74, 140
BstSFI CTRYAG 1 cut(s) 889
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 2 cut(s) 831, 885
BstX2I RGATCY 2 cut(s) 105, 730
BstYI RGATCY 2 cut(s) 105, 730
BsuI GTATCC 2 cut(s) 126, 910
BsuRI GGCC 4 cut(s) 74, 132, 299, 679
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 3 cut(s) 28, 84, 323
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 537, 852, 910
Cac8I GCNNGC 2 cut(s) 236, 275
CciI TCATGA 1 cut(s) 793
Cfr13I GGNCC 2 cut(s) 72, 677
Cfr42I CCGCGG 1 cut(s) 303
Csp6I GTAC 3 cut(s) 19, 352, 438
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviAII CATG 2 cut(s) 794, 936
CviQI GTAC 3 cut(s) 19, 352, 438
DdeI CTNAG 4 cut(s) 549, 762, 768, 839
EaeI YGGCCR 2 cut(s) 130, 297
Eam1104I CTCTTC 4 cut(s) 479, 588, 639, 741
EarI CTCTTC 4 cut(s) 479, 588, 639, 741
Ecl136II GAGCTC 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 426, 525
Eco24I GRGCYC 1 cut(s) 651
Eco31I GGTCTC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 649
Eco88I CYCGRG 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 74, 140
EcoT14I CCWWGG 2 cut(s) 426, 525
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 2 cut(s) 426, 525
FaeI CATG 2 cut(s) 797, 939
FaqI GGGAC 2 cut(s) 167, 399
FatI CATG 2 cut(s) 793, 935
FauI CCCGC 1 cut(s) 266
FauNDI CATATG 2 cut(s) 781, 817
FbaI TGATCA 1 cut(s) 796
Fnu4HI GCNGC 2 cut(s) 300, 465
FokI GGATG 3 cut(s) 15, 91, 330
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 2 cut(s) 300, 465
GluI GCNGC 2 cut(s) 300, 465
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 4 cut(s) 74, 132, 299, 679
HapII CCGG 3 cut(s) 119, 315, 728
Hin1II CATG 2 cut(s) 797, 939
HinfI GANTC 3 cut(s) 610, 749, 758
HpaII CCGG 3 cut(s) 119, 315, 728
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 4 cut(s) 12, 112, 471, 607
Hpy8I GTNNAC 1 cut(s) 438
HpyCH4III ACNGT 2 cut(s) 164, 870
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 397, 631, 707, 924
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 4 cut(s) 549, 762, 768, 839
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 2 cut(s) 797, 939
Kpn2I TCCGGA 2 cut(s) 118, 727
Ksp22I TGATCA 1 cut(s) 796
KspI CCGCGG 1 cut(s) 303
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 270, 472
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 384, 412
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 273
MflI RGATCY 2 cut(s) 105, 730
MhlI GDGCHC 1 cut(s) 651
MluCI AATT 5 cut(s) 344, 407, 601, 800, 857
MlyI GAGTC 3 cut(s) 619, 758, 767
MmeI TCCRAC 1 cut(s) 494
MroI TCCGGA 2 cut(s) 118, 727
MseI TTAA 1 cut(s) 932
MslI CAYNNNNRTG 2 cut(s) 99, 816
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 119, 315, 728
MspR9I CCNGG 2 cut(s) 76, 142
MvaI CCWGG 2 cut(s) 76, 142
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeI CATATG 2 cut(s) 781, 817
NlaIII CATG 2 cut(s) 797, 939
NlaIV GGNNCC 2 cut(s) 169, 732
NspV TTCGAA 1 cut(s) 405
PagI TCATGA 1 cut(s) 793
PasI CCCWGGG 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 639
PkrI GCNGC 2 cut(s) 301, 466
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 3 cut(s) 618, 757, 766
PpsI GAGTC 3 cut(s) 618, 757, 766
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 74, 140
PspGI CCWGG 2 cut(s) 74, 140
PspN4I GGNNCC 2 cut(s) 169, 732
PspPI GGNCC 2 cut(s) 72, 677
PsuI RGATCY 2 cut(s) 105, 730
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 3 cut(s) 20, 353, 439
RsaNI GTAC 3 cut(s) 19, 352, 438
RseI CAYNNNNRTG 2 cut(s) 99, 816
SacI GAGCTC 1 cut(s) 651
SacII CCGCGG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 1 cut(s) 932
SatI GCNGC 2 cut(s) 300, 465
Sau96I GGNCC 2 cut(s) 72, 677
SchI GAGTC 3 cut(s) 619, 758, 767
ScrFI CCNGG 2 cut(s) 76, 142
SduI GDGCHC 1 cut(s) 651
SetI ASST 9 cut(s) 26, 269, 294, 353, 443, 466, 651, 836, 896
SfaNI GCATC 2 cut(s) 384, 412
SfcI CTRYAG 1 cut(s) 889
Sfr303I CCGCGG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 405
SgrBI CCGCGG 1 cut(s) 303
SmiMI CAYNNNNRTG 2 cut(s) 99, 816
Sse9I AATT 5 cut(s) 344, 407, 601, 800, 857
SsiI CCGC 4 cut(s) 238, 273, 300, 302
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 2 cut(s) 74, 140
StyI CCWWGG 2 cut(s) 426, 525
TaaI ACNGT 2 cut(s) 164, 870
TaiI ACGT 1 cut(s) 269
TaqI TCGA 5 cut(s) 98, 405, 585, 613, 752
TasI AATT 5 cut(s) 344, 407, 601, 800, 857
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 932
Tru9I TTAA 1 cut(s) 932
TscAI CASTG 3 cut(s) 537, 859, 910
TseI GCWGC 1 cut(s) 464
TspDTI ATGAA 5 cut(s) 17, 54, 657, 804, 837
TspRI CASTG 3 cut(s) 537, 859, 910
XapI RAATTY 2 cut(s) 344, 857
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.