RLG00000025427
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000418
Physical Location & Seq
Reverse (-)
45718856 .. 45719717
862 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025427

Sequence Viewer

Length: 828 bp
ATGGAAGGTTTTCCGGTGGGAGTTAGGTTTCATCCTACAGATAACGAACTCGTGAGCTACTACCTCCGCAACAAGGCTACAATGGGCGACGGGTTTCAGTCCCCTTACGTCTCCGATTGTCCCCATTTCTATGGCAAATGGGAGCCTTGGACTGTTTGGGACAAGTACGGAGGCAATTCCCACGTGGAGGACGGAGAGCCTCTCTTCTTCTTCACCAAACGCAAAAAGTTGAACCCTAATGGCACGCGCTTTGATCGGAAGATGGGCACGGGTACCTGGAGCAACCAGTATTTTGTTAAGGTCGTTGAGGAGGGTAAGGTTATTGGACTCAAGAGGGACTTTCGATACGAGGGTGGAAGCTCTTCAGATCAAAACAATGCTTGGTTGATGCATGAGTATGAGTTGAACAAGAATGATGTAACTGTACTCTGCACTTTGAGAAAAAAACCTACAAAACCGCCACCGCGCGGTAGCGAAACTAAGAAGGATAGTGTGGATGAAAATCAGAGAAACAGGAAGTTGGACGAAGTTGTTGATGATCTTGAACAAGATCTAGATGAAAGGAGAAAGCTTATTAGAGATCTAGATCAAAGGAGAAAGGTTCGAGCGAACAGGCCGAAAAAGGGAGAGACTTGTGAGGAACAAGCAGTAGTTGGACGCCATATGATCGATGAGGATTATCGGCCTCAGTTGGTTCCGGATCTCGCCACTGCTGATGATATTGTGTTTACTACATATGACTTCTTTGCATCAACTCCAGATGATCCACTGCACGTTGAATCTAATGAATTTCTAGATCAATTTTATGAGGACAACAACTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

276

Amino Acids

32.17

Weight (kDa)

5.32

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 5 - 135 3.1e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AccII CGCG 3 cut(s) 247, 466, 468
AccIII TCCGGA 1 cut(s) 697
AciI CCGC 4 cut(s) 67, 458, 464, 468
AclWI GGATC 2 cut(s) 708, 758
AcsI RAATTY 1 cut(s) 788
AcuI CTGAAG 1 cut(s) 348
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 658
AfaI GTAC 3 cut(s) 167, 274, 426
AfiI CCNNNNNNNGG 4 cut(s) 73, 187, 467, 623
AgsI TTSAA 5 cut(s) 232, 406, 545, 779, 823
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 3 cut(s) 57, 360, 571
AluI AGCT 3 cut(s) 57, 360, 571
Alw26I GTCTC 2 cut(s) 115, 623
AlwI GGATC 2 cut(s) 708, 758
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 2 cut(s) 614, 683
ApoI RAATTY 1 cut(s) 788
Asp700I GAANNNNTTC 2 cut(s) 9, 361
Asp718I GGTACC 1 cut(s) 272
AspLEI GCGC 2 cut(s) 249, 468
AsuHPI GGTGA 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 269
BaeI ACNNNNGTAYC 2 cut(s) 337, 370
BanI GGYRCC 1 cut(s) 272
BauI CACGAG 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 184
BccI CCATC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 115, 623
BfaI CTAG 3 cut(s) 554, 584, 794
BfmI CTRYAG 1 cut(s) 36
BglII AGATCT 2 cut(s) 550, 580
Bme1390I CCNGG 1 cut(s) 277
BmiI GGNNCC 3 cut(s) 144, 274, 696
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 378, 758
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpmI CTGGAG 2 cut(s) 298, 741
BpuEI CTTGAG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 669
BsaAI YACGTR 1 cut(s) 184
BsaBI GATNNNNATC 2 cut(s) 501, 585
BsaHI GRCGYC 1 cut(s) 658
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 2 cut(s) 13, 697
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 187, 467, 623
Bse1I ACTGG 1 cut(s) 286
Bse8I GATNNNNATC 2 cut(s) 501, 585
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 1 cut(s) 277
BseCI ATCGAT 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 31, 502
BseJI GATNNNNATC 2 cut(s) 501, 585
BseLI CCNNNNNNNGG 4 cut(s) 73, 187, 467, 623
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 269
BsgI GTGCAG 2 cut(s) 415, 755
Bsh1236I CGCG 3 cut(s) 247, 466, 468
BshFI GGCC 2 cut(s) 616, 685
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 669
BsiSI CCGG 2 cut(s) 14, 698
BslFI GGGAC 4 cut(s) 85, 105, 173, 350
BslI CCNNNNNNNGG 4 cut(s) 73, 187, 467, 623
BsmAI GTCTC 2 cut(s) 115, 623
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 4 cut(s) 85, 105, 173, 350
BsnI GGCC 2 cut(s) 616, 685
Bsp1286I GDGCHC 1 cut(s) 269
Bsp13I TCCGGA 1 cut(s) 697
BspACI CCGC 4 cut(s) 67, 458, 464, 468
BspANI GGCC 2 cut(s) 616, 685
BspCNI CTCAG 1 cut(s) 700
BspDI ATCGAT 1 cut(s) 669
BspEI TCCGGA 1 cut(s) 697
BspFNI CGCG 3 cut(s) 247, 466, 468
BspLI GGNNCC 3 cut(s) 144, 274, 696
BspPI GGATC 2 cut(s) 708, 758
BspQI GCTCTTC 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 146
BssNI GRCGYC 1 cut(s) 658
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 2 cut(s) 154, 424
Bst6I CTCTTC 2 cut(s) 209, 367
BstACI GRCGYC 1 cut(s) 658
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 480, 687
BstF5I GGATG 2 cut(s) 31, 502
BstFNI CGCG 3 cut(s) 247, 466, 468
BstHHI GCGC 2 cut(s) 249, 468
BstMAI GTCTC 2 cut(s) 115, 623
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 269
BstUI CGCG 3 cut(s) 247, 466, 468
BstX2I RGATCY 3 cut(s) 550, 580, 700
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 3 cut(s) 550, 580, 700
Bsu15I ATCGAT 1 cut(s) 669
BsuRI GGCC 2 cut(s) 616, 685
BsuTUI ATCGAT 1 cut(s) 669
BtsCI GGATG 2 cut(s) 31, 502
BtsI GCAGTG 2 cut(s) 708, 767
BtsIMutI CAGTG 2 cut(s) 708, 767
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 2 cut(s) 249, 468
ClaI ATCGAT 1 cut(s) 669
CseI GACGC 1 cut(s) 666
Csp6I GTAC 3 cut(s) 166, 273, 425
CviAII CATG 1 cut(s) 392
CviJI RGCY 8 cut(s) 57, 77, 145, 199, 360, 571, 616, 685
CviKI_1 RGCY 8 cut(s) 57, 77, 145, 199, 360, 571, 616, 685
CviQI GTAC 3 cut(s) 166, 273, 425
DdeI CTNAG 2 cut(s) 480, 687
Eam1104I CTCTTC 2 cut(s) 209, 367
EarI CTCTTC 2 cut(s) 209, 367
Eco130I CCWWGG 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 395
FaiI YATR 8 cut(s) 132, 393, 399, 663, 665, 736, 738, 807
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 4 cut(s) 85, 105, 173, 350
FatI CATG 1 cut(s) 391
FauNDI CATATG 2 cut(s) 663, 736
FokI GGATG 2 cut(s) 18, 509
FspBI CTAG 3 cut(s) 554, 584, 794
GlaI GCGC 2 cut(s) 248, 467
GsuI CTGGAG 2 cut(s) 298, 741
HaeIII GGCC 2 cut(s) 616, 685
HapII CCGG 2 cut(s) 14, 698
HgaI GACGC 1 cut(s) 666
HhaI GCGC 2 cut(s) 249, 468
Hin1I GRCGYC 1 cut(s) 658
Hin1II CATG 1 cut(s) 395
Hin6I GCGC 2 cut(s) 247, 466
HinP1I GCGC 2 cut(s) 247, 466
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 2 cut(s) 327, 779
HpaII CCGG 2 cut(s) 14, 698
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 729
Hpy188I TCNGA 4 cut(s) 115, 258, 367, 507
Hpy188III TCNNGA 8 cut(s) 52, 331, 542, 554, 584, 698, 758, 794
Hpy8I GTNNAC 1 cut(s) 729
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 154, 424
HpyCH4IV ACGT 3 cut(s) 108, 183, 774
HpyCH4V TGCA 4 cut(s) 391, 432, 749, 772
HpyF3I CTNAG 2 cut(s) 480, 687
HpySE526I ACGT 3 cut(s) 108, 183, 774
Hsp92I GRCGYC 1 cut(s) 658
Hsp92II CATG 1 cut(s) 395
HspAI GCGC 2 cut(s) 247, 466
Kpn2I TCCGGA 1 cut(s) 697
KpnI GGTACC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 142, 279
LpnPI CCDG 8 cut(s) 27, 262, 289, 299, 499, 598, 711, 771
LweI GCATC 2 cut(s) 378, 758
MaeI CTAG 3 cut(s) 554, 584, 794
MaeII ACGT 3 cut(s) 108, 183, 774
MaeIII GTNAC 1 cut(s) 418
MboII GAAGA 5 cut(s) 196, 199, 202, 271, 354
MflI RGATCY 3 cut(s) 550, 580, 700
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 3 cut(s) 175, 788, 800
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 2 cut(s) 501, 634
Mph1103I ATGCAT 1 cut(s) 393
MroI TCCGGA 1 cut(s) 697
MroXI GAANNNNTTC 2 cut(s) 9, 361
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 2 cut(s) 129, 396
MspI CCGG 2 cut(s) 14, 698
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MvnI CGCG 3 cut(s) 247, 466, 468
NdeI CATATG 2 cut(s) 663, 736
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 3 cut(s) 144, 274, 696
NsiI ATGCAT 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 367
PdmI GAANNNNTTC 2 cut(s) 9, 361
PfeI GAWTC 1 cut(s) 779
PleI GAGTC 1 cut(s) 321
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 275
PspCI CACGTG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 144, 274, 696
PsuI RGATCY 3 cut(s) 550, 580, 700
RsaI GTAC 3 cut(s) 167, 274, 426
RsaNI GTAC 3 cut(s) 166, 273, 425
RseI CAYNNNNRTG 2 cut(s) 129, 396
SapI GCTCTTC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 297
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 269
SfaNI GCATC 2 cut(s) 378, 758
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 129, 396
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 3 cut(s) 175, 788, 800
SsiI CCGC 4 cut(s) 67, 458, 464, 468
SspMI CTAG 3 cut(s) 554, 584, 794
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 154, 424
TaiI ACGT 3 cut(s) 111, 186, 777
TaqI TCGA 3 cut(s) 343, 604, 669
TasI AATT 3 cut(s) 175, 788, 800
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 779
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 715, 774
TspDTI ATGAA 4 cut(s) 20, 513, 573, 801
TspGWI ACGGA 2 cut(s) 183, 207
TspRI CASTG 2 cut(s) 715, 774
XapI RAATTY 1 cut(s) 788
XbaI TCTAGA 3 cut(s) 553, 583, 793
XmnI GAANNNNTTC 2 cut(s) 9, 361
XspI CTAG 3 cut(s) 554, 584, 794
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.