RchiOBHm_Chr1g0333911

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000418
Physical Location & Seq
Forward (+)
26027932 .. 26028468
537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56268

Sequence Viewer

Length: 537 bp
ATGGCATCGGGTGCTTACCCAGTTGGTTACAGATTTCATCCTACAGACCTGGAATTGGTGGCTTACTACCTCCACAACCGGGTTGCCATGGTTGATCAGTTTCGCTCGAGTCCAATCCTTGATTGCCCTGACTTCTATGGCAAAAATGAGCCCTGGCTGATTTGGGACATGTTCCGTGCCCAATCCAACAACATGAAAGAGGAAGAAACTCTGTATTTCTTTACTCACCGCAAGAAATTGAATCCCAAAGCGAAAAAATTTGATAGAAAAGTGGGATCGGGAACATGGAGTGCCCAATATTCAAAAAATGTTGTTGCTGCTGATGATAGTGTTGTTGGAATTAAGAGAGAATTTCGGTATGAGGGTGGATCTGATCCACATCAAAATGGGGCTTGGTTGATGCAGGAGTACGAGATCACATCTCACAATGATCTCGTACTCTGCACCCTCAGAAAAAACCCCAGAAAACTTCCACCCCAACTTCTCCTGCTCCTCCGAATCAGAGCCACATTATTACTAGCAACAAAAGGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

178

Amino Acids

20.66

Weight (kDa)

9.41

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 138 1.9e-25 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AclWI GGATC 3 cut(s) 283, 368, 376
AcsI RAATTY 2 cut(s) 257, 350
AfaI GTAC 2 cut(s) 410, 438
AfiI CCNNNNNNNGG 2 cut(s) 55, 79
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 241, 303
AjnI CCWGG 2 cut(s) 48, 152
AlwI GGATC 3 cut(s) 283, 368, 376
Ama87I CYCGRG 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 257, 350
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 106
BaeGI GKGCMC 2 cut(s) 181, 295
BanII GRGCYC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 304
BciT130I CCWGG 2 cut(s) 50, 154
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 518
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 3 cut(s) 50, 80, 154
BmeT110I CYCGRG 1 cut(s) 106
BmrFI CCNGG 3 cut(s) 50, 80, 154
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 14, 390
BmuI ACTGGG 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 80
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 87, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 79
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 378
BseBI CCWGG 2 cut(s) 50, 154
BseDI CCNNGG 2 cut(s) 87, 152
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 2 cut(s) 55, 79
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 482
BseSI GKGCMC 2 cut(s) 181, 295
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 55, 79
BsmFI GGGAC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 3 cut(s) 153, 181, 295
Bsp143I GATC 6 cut(s) 94, 275, 368, 373, 414, 430
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 462
BspPI GGATC 3 cut(s) 283, 368, 376
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 87, 152
BssMI GATC 6 cut(s) 94, 275, 368, 373, 414, 430
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 50, 154
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 449
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 6 cut(s) 97, 278, 371, 376, 417, 433
BstMBI GATC 6 cut(s) 94, 275, 368, 373, 414, 430
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 50, 154
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 3 cut(s) 48, 78, 152
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 2 cut(s) 181, 295
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 37
Csp6I GTAC 2 cut(s) 409, 437
CviAII CATG 4 cut(s) 88, 169, 193, 285
CviJI RGCY 5 cut(s) 62, 151, 157, 392, 506
CviKI_1 RGCY 5 cut(s) 62, 151, 157, 392, 506
CviQI GTAC 2 cut(s) 409, 437
DdeI CTNAG 1 cut(s) 449
DpnI GATC 6 cut(s) 96, 277, 370, 375, 416, 432
DpnII GATC 6 cut(s) 94, 275, 368, 373, 414, 430
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 48, 152
EcoT14I CCWWGG 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 4 cut(s) 91, 172, 196, 288
FaiI YATR 6 cut(s) 89, 138, 170, 194, 286, 360
FaqI GGGAC 1 cut(s) 179
FatI CATG 4 cut(s) 87, 168, 192, 284
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 518
GluI GCNGC 1 cut(s) 318
HapII CCGG 1 cut(s) 79
Hin1II CATG 4 cut(s) 91, 172, 196, 288
HinfI GANTC 3 cut(s) 109, 241, 498
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 4 cut(s) 373, 452, 497, 503
Hpy188III TCNNGA 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 403, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 449
Hsp92II CATG 4 cut(s) 91, 172, 196, 288
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 6 cut(s) 94, 275, 368, 373, 414, 430
LmnI GCTCC 1 cut(s) 495
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 14, 390
MaeI CTAG 1 cut(s) 518
MaeIII GTNAC 1 cut(s) 26
MalI GATC 6 cut(s) 96, 277, 370, 375, 416, 432
MboI GATC 6 cut(s) 94, 275, 368, 373, 414, 430
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 3 cut(s) 153, 181, 295
MluCI AATT 5 cut(s) 53, 236, 257, 339, 350
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 2 cut(s) 210, 316
MnlI CCTC 5 cut(s) 80, 193, 355, 458, 503
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 3 cut(s) 50, 80, 154
MvaI CCWGG 2 cut(s) 50, 154
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 87
NdeII GATC 6 cut(s) 94, 275, 368, 373, 414, 430
NlaIII CATG 4 cut(s) 91, 172, 196, 288
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 106
PciI ACATGT 1 cut(s) 168
PfeI GAWTC 2 cut(s) 241, 498
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PscI ACATGT 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 48, 152
PspGI CCWGG 2 cut(s) 48, 152
PspXI VCTCGAGB 1 cut(s) 106
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 2 cut(s) 410, 438
RsaNI GTAC 2 cut(s) 409, 437
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 6 cut(s) 94, 275, 368, 373, 414, 430
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 3 cut(s) 50, 80, 154
SduI GDGCHC 3 cut(s) 153, 181, 295
SetI ASST 3 cut(s) 51, 72, 532
SfaNI GCATC 2 cut(s) 14, 390
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 5 cut(s) 53, 236, 257, 339, 350
SsiI CCGC 1 cut(s) 229
SspI AATATT 1 cut(s) 299
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 3 cut(s) 48, 78, 152
StyI CCWWGG 1 cut(s) 87
TaqI TCGA 1 cut(s) 107
TasI AATT 5 cut(s) 53, 236, 257, 339, 350
TfiI GAWTC 2 cut(s) 241, 498
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 26, 209
TspGWI ACGGA 1 cut(s) 164
XapI RAATTY 2 cut(s) 257, 350
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 106
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.