Rmu_sc0004304.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004304.1
OG0000418
Physical Location & Seq
Reverse (-)
32917 .. 33345
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004304.1_g000006.1.cds

Sequence Viewer

Length: 429 bp
atgcaagagtaccagatcattgatgatgattctgatattgtactatgcgctttgaggaagaaccctaaaaaggcaccacttgctgagaggagcaatgttgttgaaaagaccagagtgaatgacaaaaaaagaaagagcattgtggatcaacctggaaagcctaaagcgaaaaagcagaaaaaggaagagagttatgatcaggaaaaagaaggcagcagcagtgttgatcagatgaaagtggaagagaccaattatgagttggatcaagatcacagactgctgcaagtagtgttgccttatccatttgttgatgatcaagattgttattatcctgagctttatcctaagctgtgtgttgataataaggctgatttctctactattgatgaattacttgcacaaaccccaacttggtatgagggcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.53

Weight (kDa)

4.84

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AclWI GGATC 2 cut(s) 153, 270
AfaI GTAC 2 cut(s) 11, 42
AfiI CCNNNNNNNGG 2 cut(s) 70, 411
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 337, 349
AluI AGCT 2 cut(s) 337, 349
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 2 cut(s) 153, 270
ApeKI GCWGC 3 cut(s) 213, 216, 280
AspLEI GCGC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 73
BbvI GCAGC 3 cut(s) 225, 228, 267
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 3 cut(s) 196, 226, 313
BcoDI GTCTC 1 cut(s) 239
BisI GCNGC 3 cut(s) 214, 217, 281
BlsI GCNGC 3 cut(s) 215, 218, 282
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 153
Bpu10I CCTNAGC 2 cut(s) 333, 345
BsaBI GATNNNNATC 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 411
Bse3DI GCAATG 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 2 cut(s) 70, 411
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 75, 324
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 225, 228, 267
BshNI GGYRCC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 70, 411
BsmAI GTCTC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 239
Bsp143I GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
BspCNI CTCAG 2 cut(s) 76, 325
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 153, 270
BspT107I GGYRCC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
Bst2UI CCWGG 1 cut(s) 153
Bst6I CTCTTC 2 cut(s) 180, 237
BstAPI GCANNNNNTGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 84, 333, 345
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 7 cut(s) 18, 148, 199, 229, 265, 271, 316
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 225, 228, 267
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
CfoI GCGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 10, 41
CviJI RGCY 4 cut(s) 160, 337, 349, 368
CviKI_1 RGCY 4 cut(s) 160, 337, 349, 368
CviQI GTAC 2 cut(s) 10, 41
DdeI CTNAG 3 cut(s) 84, 333, 345
DpnI GATC 7 cut(s) 17, 147, 198, 228, 264, 270, 315
DpnII GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
Eam1104I CTCTTC 2 cut(s) 180, 237
EarI CTCTTC 2 cut(s) 180, 237
Eco31I GGTCTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 151
FaiI YATR 4 cut(s) 46, 195, 255, 417
FbaI TGATCA 3 cut(s) 196, 226, 313
Fnu4HI GCNGC 3 cut(s) 214, 217, 281
Fsp4HI GCNGC 3 cut(s) 214, 217, 281
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 214, 217, 281
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 34, 231
Hpy188III TCNNGA 4 cut(s) 200, 266, 317, 332
HpyAV CCTTC 1 cut(s) 203
HpyCH4V TGCA 3 cut(s) 4, 283, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 84, 333, 345
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 3 cut(s) 196, 226, 313
Kzo9I GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 26, 124, 138, 165, 185, 345
Lsp1109I GCAGC 3 cut(s) 225, 228, 267
MalI GATC 7 cut(s) 17, 147, 198, 228, 264, 270, 315
MboI GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
MboII GAAGA 3 cut(s) 70, 197, 254
MluCI AATT 2 cut(s) 250, 389
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 48, 81, 412
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
NlaIV GGNNCC 1 cut(s) 75
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 215, 218, 282
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 75
RsaI GTAC 2 cut(s) 11, 42
RsaNI GTAC 2 cut(s) 10, 41
SatI GCNGC 3 cut(s) 214, 217, 281
Sau3AI GATC 7 cut(s) 15, 145, 196, 226, 262, 268, 313
ScrFI CCNGG 1 cut(s) 153
SetI ASST 3 cut(s) 154, 339, 351
Sse9I AATT 2 cut(s) 250, 389
StyD4I CCNGG 1 cut(s) 151
TasI AATT 2 cut(s) 250, 389
TatI WGTACW 1 cut(s) 40
TfiI GAWTC 1 cut(s) 29
TscAI CASTG 1 cut(s) 226
TseI GCWGC 3 cut(s) 213, 216, 280
TspDTI ATGAA 2 cut(s) 248, 402
TspRI CASTG 1 cut(s) 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.