RLG00000034376
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000418
Physical Location & Seq
Reverse (-)
41665496 .. 41666413
918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034376

Sequence Viewer

Length: 918 bp
ATGGCGACATTAAGATCCTTCAACAATCGATCGTCAACAACCAACGAATCAGGTCTCCCAGTCGGGGTTAGGTTCCGTCCCACAGACCACGAACTCCTCGATTACTATCTCCACACTAGGATTGCCATGGGTGACCACTTTCACTCCGATTTCGTCGCCGATTGTCCTGATTTTTACGGCGACAATGAGCCCTGGGTTGTTTGGCAGATCTACGGCAGCGGTGAGTCCAAGAAAGTGGAGGATGAAAAGACTCTCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCGCCAAGCGATTTGATCGGAAAGTGGGTTCCGGTACTTGGAGCGGTCAGTATTCGAGAGAAGTTGTTGACCAGGAGGATGATGGTGTTGTTATTGGGCTCAAGAGGGAGTTCCGATACGAGGGCGGTTGTGATTCTCGTCAAAACGAGGCTTGGCTGATGCAAGAGTTTCAGCTCCTTGATGATGATTCTGATTTTGTACTGTGCACTTTGAGAAAGAACCCTAGAAAGGCACCACCAACCCCAACTGCTCAGGGGAGCACTGTTGTTGAAAATACCAGAGTTAATGACAAAAAGAGGAGGAGCATTGTGGATCAACCCAGAAAGCCTAAATCGAAAAAGCAGAAAAAGGAAGAGAGTTGTCATCAGGAACAAGAAGGCAGCAGTACTGTTGATCAGATGAAAGTGGAAGAGACCAATTACGAGTTGGATCAAGATCATGGACTGCTGCAACTAGTGTTGCCCTATCCATTTGTTGATGATCAAGATTGTTATTATCCTGAGATTTATCCAGAGCTGTTTGTTGATGATGAGCGTGATTTATTTACCATTGATGAATTACTTGGACAAACCCCAACTTGGCAGGAGGGCAACAACTTCAATTTGATTACAGGAGTACCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

306

Amino Acids

35.4

Weight (kDa)

4.93

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 155 3.8e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccBSI CCGCTC 1 cut(s) 333
AciI CCGC 4 cut(s) 219, 291, 333, 414
AclWI GGATC 3 cut(s) 9, 609, 726
AfaI GTAC 4 cut(s) 325, 489, 676, 906
AfiI CCNNNNNNNGG 5 cut(s) 64, 327, 409, 517, 867
AgsI TTSAA 3 cut(s) 22, 560, 889
AhlI ACTAGT 1 cut(s) 742
AjnI CCWGG 2 cut(s) 191, 360
AloI GAACNNNNNNTCC 2 cut(s) 301, 333
AluBI AGCT 2 cut(s) 463, 805
AluI AGCT 2 cut(s) 463, 805
Alw21I GWGCWC 2 cut(s) 497, 551
Alw26I GTCTC 2 cut(s) 59, 695
Alw44I GTGCAC 1 cut(s) 493
AlwI GGATC 3 cut(s) 9, 609, 726
ApaLI GTGCAC 1 cut(s) 493
ApeKI GCWGC 3 cut(s) 216, 669, 736
AsuHPI GGTGA 3 cut(s) 143, 233, 256
BaeGI GKGCMC 1 cut(s) 497
BaeI ACNNNNGTAYC 1 cut(s) 888
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 2 cut(s) 192, 390
Bbv12I GWGCWC 2 cut(s) 497, 551
BbvI GCAGC 3 cut(s) 228, 681, 723
BccI CCATC 2 cut(s) 276, 365
BceAI ACGGC 2 cut(s) 193, 229
BciT130I CCWGG 2 cut(s) 193, 362
BclI TGATCA 2 cut(s) 682, 769
BcoDI GTCTC 2 cut(s) 59, 695
BcuI ACTAGT 1 cut(s) 742
BfaI CTAG 3 cut(s) 117, 513, 743
BglII AGATCT 1 cut(s) 207
BisI GCNGC 3 cut(s) 217, 670, 737
BlsI GCNGC 3 cut(s) 218, 671, 738
BmcAI AGTACT 1 cut(s) 676
Bme1390I CCNGG 2 cut(s) 193, 362
BmiI GGNNCC 3 cut(s) 74, 319, 522
BmrFI CCNGG 2 cut(s) 193, 362
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 438
BmuI ACTGGG 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 374
Bsa29I ATCGAT 1 cut(s) 28
BsaBI GATNNNNATC 2 cut(s) 105, 723
BsaI GGTCTC 2 cut(s) 59, 695
BsaJI CCNNGG 3 cut(s) 126, 191, 192
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 327, 409, 517, 867
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 2 cut(s) 105, 723
BseBI CCWGG 2 cut(s) 193, 362
BseCI ATCGAT 1 cut(s) 28
BseDI CCNNGG 3 cut(s) 126, 191, 192
BseGI GGATG 2 cut(s) 247, 373
BseJI GATNNNNATC 2 cut(s) 105, 723
BseLI CCNNNNNNNGG 5 cut(s) 64, 327, 409, 517, 867
BseMII CTCAG 3 cut(s) 272, 554, 780
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 3 cut(s) 86, 601, 604
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 3 cut(s) 228, 681, 723
Bsh1285I CGRYCG 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 520
BshVI ATCGAT 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 497, 551
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 2 cut(s) 63, 270
BslI CCNNNNNNNGG 5 cut(s) 64, 327, 409, 517, 867
BsmAI GTCTC 2 cut(s) 59, 695
BsmFI GGGAC 2 cut(s) 63, 270
Bso31I GGTCTC 2 cut(s) 59, 695
Bsp1286I GDGCHC 4 cut(s) 192, 390, 497, 551
Bsp143I GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 4 cut(s) 219, 291, 333, 414
BspCNI CTCAG 3 cut(s) 273, 553, 781
BspDI ATCGAT 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 74, 319, 522
BspPI GGATC 3 cut(s) 9, 609, 726
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 2 cut(s) 59, 695
BsrBI CCGCTC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 126, 191, 192
BssMI GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 193, 362
Bst4CI ACNGT 3 cut(s) 492, 553, 679
Bst6I CTCTTC 2 cut(s) 636, 693
BstDEI CTNAG 3 cut(s) 281, 540, 789
BstDSI CCRYGG 1 cut(s) 126
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 2 cut(s) 247, 373
BstKTI GATC 9 cut(s) 17, 32, 210, 307, 604, 685, 721, 727, 772
BstMAI GTCTC 2 cut(s) 59, 695
BstMBI GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
BstMCI CGRYCG 1 cut(s) 32
BstNI CCWGG 2 cut(s) 193, 362
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 191, 360
BstSLI GKGCMC 1 cut(s) 497
BstV1I GCAGC 3 cut(s) 228, 681, 723
BstX2I RGATCY 2 cut(s) 14, 207
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 2 cut(s) 14, 207
Bsu15I ATCGAT 1 cut(s) 28
BsuTUI ATCGAT 1 cut(s) 28
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 2 cut(s) 247, 373
BtsIMutI CAGTG 1 cut(s) 549
ClaI ATCGAT 1 cut(s) 28
Csp6I GTAC 4 cut(s) 324, 488, 675, 905
CviAII CATG 2 cut(s) 127, 728
CviJI RGCY 8 cut(s) 190, 280, 388, 440, 445, 463, 616, 805
CviKI_1 RGCY 8 cut(s) 190, 280, 388, 440, 445, 463, 616, 805
CviQI GTAC 4 cut(s) 324, 488, 675, 905
DdeI CTNAG 3 cut(s) 281, 540, 789
DpnI GATC 9 cut(s) 16, 31, 209, 306, 603, 684, 720, 726, 771
DpnII GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
Eam1104I CTCTTC 2 cut(s) 636, 693
EarI CTCTTC 2 cut(s) 636, 693
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 2 cut(s) 192, 390
Eco31I GGTCTC 2 cut(s) 59, 695
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 191, 360
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 2 cut(s) 192, 390
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 130, 731
FaiI YATR 2 cut(s) 128, 729
FaqI GGGAC 2 cut(s) 63, 270
FatI CATG 2 cut(s) 126, 727
FbaI TGATCA 2 cut(s) 682, 769
Fnu4HI GCNGC 3 cut(s) 217, 670, 737
FokI GGATG 2 cut(s) 254, 380
FriOI GRGCYC 2 cut(s) 192, 390
Fsp4HI GCNGC 3 cut(s) 217, 670, 737
FspBI CTAG 3 cut(s) 117, 513, 743
GluI GCNGC 3 cut(s) 217, 670, 737
HapII CCGG 1 cut(s) 321
Hin1II CATG 2 cut(s) 130, 731
HincII GTYRAC 2 cut(s) 36, 358
HindII GTYRAC 2 cut(s) 36, 358
HinfI GANTC 6 cut(s) 47, 224, 250, 283, 422, 476
HpaII CCGG 1 cut(s) 321
HphI GGTGA 3 cut(s) 143, 233, 256
Hpy166II GTNNAC 3 cut(s) 36, 358, 495
Hpy188I TCNGA 6 cut(s) 148, 273, 309, 404, 481, 687
Hpy188III TCNNGA 8 cut(s) 167, 345, 391, 656, 722, 773, 788, 800
Hpy8I GTNNAC 3 cut(s) 36, 358, 495
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 3 cut(s) 28, 270, 659
HpyCH4III ACNGT 3 cut(s) 492, 553, 679
HpyCH4V TGCA 3 cut(s) 451, 495, 739
HpyF3I CTNAG 3 cut(s) 281, 540, 789
Hsp92II CATG 2 cut(s) 130, 731
Ksp22I TGATCA 2 cut(s) 682, 769
Kzo9I GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
LmnI GCTCC 4 cut(s) 330, 468, 546, 591
Lsp1109I GCAGC 3 cut(s) 228, 681, 723
LweI GCATC 1 cut(s) 438
MaeI CTAG 3 cut(s) 117, 513, 743
MaeIII GTNAC 1 cut(s) 131
MalI GATC 9 cut(s) 16, 31, 209, 306, 603, 684, 720, 726, 771
MbiI CCGCTC 1 cut(s) 333
MboI GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
MboII GAAGA 3 cut(s) 253, 653, 710
MflI RGATCY 2 cut(s) 14, 207
MhlI GDGCHC 4 cut(s) 192, 390, 497, 551
MluCI AATT 3 cut(s) 706, 845, 889
MlyI GAGTC 3 cut(s) 233, 244, 292
MmeI TCCRAC 1 cut(s) 696
MnlI CCTC 9 cut(s) 107, 232, 358, 387, 403, 430, 579, 582, 868
MseI TTAA 2 cut(s) 11, 573
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 193, 362
MvaI CCWGG 2 cut(s) 193, 362
NcoI CCATGG 1 cut(s) 126
NdeII GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
NlaIII CATG 2 cut(s) 130, 731
NlaIV GGNNCC 3 cut(s) 74, 319, 522
NmuCI GTSAC 1 cut(s) 131
PasI CCCWGGG 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 3 cut(s) 47, 422, 476
PkrI GCNGC 3 cut(s) 218, 671, 738
Ple19I CGATCG 1 cut(s) 32
PleI GAGTC 3 cut(s) 232, 244, 291
PpsI GAGTC 3 cut(s) 232, 244, 291
Psp6I CCWGG 2 cut(s) 191, 360
PspEI GGTNACC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 191, 360
PspN4I GGNNCC 3 cut(s) 74, 319, 522
PsuI RGATCY 2 cut(s) 14, 207
PvuI CGATCG 1 cut(s) 32
RsaI GTAC 4 cut(s) 325, 489, 676, 906
RsaNI GTAC 4 cut(s) 324, 488, 675, 905
SaqAI TTAA 2 cut(s) 11, 573
SatI GCNGC 3 cut(s) 217, 670, 737
Sau3AI GATC 9 cut(s) 14, 29, 207, 304, 601, 682, 718, 724, 769
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 3 cut(s) 233, 244, 292
ScrFI CCNGG 2 cut(s) 193, 362
SduI GDGCHC 4 cut(s) 192, 390, 497, 551
SetI ASST 4 cut(s) 55, 74, 465, 807
SfaNI GCATC 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SpeI ACTAGT 1 cut(s) 742
Sse9I AATT 3 cut(s) 706, 845, 889
SsiI CCGC 4 cut(s) 219, 291, 333, 414
SspMI CTAG 3 cut(s) 117, 513, 743
StyD4I CCNGG 2 cut(s) 191, 360
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 492, 553, 679
TaqI TCGA 4 cut(s) 28, 99, 344, 623
TasI AATT 3 cut(s) 706, 845, 889
TatI WGTACW 2 cut(s) 487, 674
TfiI GAWTC 3 cut(s) 47, 422, 476
Tru1I TTAA 2 cut(s) 11, 573
Tru9I TTAA 2 cut(s) 11, 573
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 3 cut(s) 216, 669, 736
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 258, 704, 858
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 1 cut(s) 556
VneI GTGCAC 1 cut(s) 493
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 712
XspI CTAG 3 cut(s) 117, 513, 743
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.