FvH4_6g05730
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000418
Physical Location & Seq
Forward (+)
3266680 .. 3267747
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05730.t1

Sequence Viewer

Length: 1068 bp
ATGAACATGGCAGCTCCGGTGATGCAAATCAAGGGCATGAGGTTTCATCCTACAGACGTTGAACTCATTGAATATTTCCTCCACGACAAGGCCGATGCCGATCAAGCAGGCTGTTACTCCAGTTTCATCCATGAATGTAATGATCTTTACGGCGAAAAGGCCATGGAGCCATGGGATATTTGGGACAAGTATGGGGGTTCTACATATGAGGAAGGAGAGCCCCTCTACTTCTACACCAAGCGCATCAAGCTGAACAGTGACGGCAAACGCTTTAATCGGAAGGTAGGCTCCGGTACATGGAGTGGAGAGTACTCGAAAGACGTCGTAGTTTCTTCGCAGAATGGCATAACCAAAATTGGGACAATGAGGAACTTACGCTATGAGATGATCAAGGGATGTGATGCTACTCAAAACGGTGCATGGCTTATGCACGAGTACGAGAGTGCGTTCGACATTGAACATGATTATGTGATTTGCGCTCTGAAAAGGAATCCAAGAAGAGCGCAAGCTAATCAGGAAGATGCTGAAATTACAAAAAAGAATAGTGTCAAAAAAAGAAAGAGCGCGAGTTTTGTTGATCATCAATCCAGAAAGCGGAAAAAGAAACTAAAGGAGGAAGAGATTTATGAGATAATTGATCTTGAACCGTCAAATATGGTAAAGGAAGAAAGGAAGGAAGAGACAGCTTACGACGATCAAGGTCGCAGCAGTTGTACGCAGCTGCCGGAGCAGCAGCCCTACCATCATGATCAGGATAATGTTACTGATTATTTTTCAGGGCGCCTTGGTAATAATTATGATGATGGTATTTGTTTAGACGATCTCATTGGACCAATTAATTCTCCATACTACAAGTCCTTTCAATATGAGAATCAGTTGTATCACGGCGACGACAGCAAGTTCAACTTCATGGATTACACGAATGGAGGGACGTCACAGCTGCCTGAGAATCAGTTATATCACCGCAGCGACGACAGCAAGTTCAACGTCATGGATTACATGAATATTGGAGGGATGTCACAGCTGCCCGATGATCAAGCCACTGTTGATTACCTAGAGAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

356

Amino Acids

41.22

Weight (kDa)

5.03

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 147 1.6e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 324, 935
AccB1I GGYRCC 1 cut(s) 780
AccII CGCG 1 cut(s) 566
AciI CCGC 2 cut(s) 595, 964
AcsI RAATTY 1 cut(s) 1060
AcyI GRCGYC 3 cut(s) 321, 781, 932
AfaI GTAC 4 cut(s) 295, 311, 437, 715
AfiI CCNNNNNNNGG 4 cut(s) 88, 297, 357, 594
AgsI TTSAA 7 cut(s) 62, 71, 458, 644, 863, 904, 985
AluBI AGCT 7 cut(s) 14, 250, 509, 686, 721, 940, 1024
AluI AGCT 7 cut(s) 14, 250, 509, 686, 721, 940, 1024
Alw26I GTCTC 1 cut(s) 674
AoxI GGCC 2 cut(s) 90, 159
ApeKI GCWGC 9 cut(s) 11, 705, 718, 721, 730, 733, 940, 966, 1024
ApoI RAATTY 1 cut(s) 1060
AseI ATTAAT 1 cut(s) 837
AspLEI GCGC 5 cut(s) 243, 479, 505, 566, 783
AspS9I GGNCC 1 cut(s) 830
AsuHPI GGTGA 2 cut(s) 31, 953
AvaII GGWCC 1 cut(s) 830
BanI GGYRCC 1 cut(s) 780
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 431
BbvI GCAGC 9 cut(s) 23, 708, 717, 730, 742, 745, 927, 978, 1011
BccI CCATC 2 cut(s) 750, 797
BceAI ACGGC 3 cut(s) 166, 277, 901
BclI TGATCA 4 cut(s) 387, 577, 748, 1033
BcoDI GTCTC 1 cut(s) 674
BfaI CTAG 1 cut(s) 1055
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 784
BisI GCNGC 9 cut(s) 12, 706, 719, 722, 731, 734, 941, 967, 1025
BlsI GCNGC 9 cut(s) 13, 707, 720, 723, 732, 735, 942, 968, 1026
BmcAI AGTACT 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 3 cut(s) 168, 289, 782
BmsI GCATC 5 cut(s) 12, 85, 252, 391, 511
BplI GAGNNNNNCTC 2 cut(s) 207, 239
BpmI CTGGAG 1 cut(s) 103
BsaBI GATNNNNATC 2 cut(s) 26, 99
BsaHI GRCGYC 3 cut(s) 321, 781, 932
BsaJI CCNNGG 3 cut(s) 162, 170, 784
BsaWI WCCGGW 2 cut(s) 16, 290
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 297, 357, 594
Bse1I ACTGG 1 cut(s) 120
Bse8I GATNNNNATC 2 cut(s) 26, 99
BseDI CCNNGG 3 cut(s) 162, 170, 784
BseGI GGATG 4 cut(s) 46, 126, 401, 1020
BseJI GATNNNNATC 2 cut(s) 26, 99
BseLI CCNNNNNNNGG 4 cut(s) 88, 297, 357, 594
BseMII CTCAG 1 cut(s) 936
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 9 cut(s) 23, 708, 717, 730, 742, 745, 927, 978, 1011
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 2 cut(s) 92, 161
BshNI GGYRCC 1 cut(s) 780
BsiSI CCGG 3 cut(s) 17, 291, 725
BslFI GGGAC 3 cut(s) 197, 373, 943
BslI CCNNNNNNNGG 4 cut(s) 88, 297, 357, 594
BsmAI GTCTC 1 cut(s) 674
BsmFI GGGAC 3 cut(s) 197, 373, 943
BsnI GGCC 2 cut(s) 92, 161
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
Bsp19I CCATGG 2 cut(s) 162, 170
BspACI CCGC 2 cut(s) 595, 964
BspANI GGCC 2 cut(s) 92, 161
BspCNI CTCAG 1 cut(s) 937
BspFNI CGCG 1 cut(s) 566
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 3 cut(s) 168, 289, 782
BspQI GCTCTTC 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 780
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 162, 170, 784
BssMI GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
BssNI GRCGYC 3 cut(s) 321, 781, 932
BssSI CACGAG 1 cut(s) 431
BssT1I CCWWGG 3 cut(s) 162, 170, 784
Bst2BI CACGAG 1 cut(s) 431
Bst4CI ACNGT 4 cut(s) 257, 416, 648, 1045
Bst6I CTCTTC 3 cut(s) 493, 612, 672
BstACI GRCGYC 3 cut(s) 321, 781, 932
BstC8I GCNNGC 2 cut(s) 109, 507
BstDEI CTNAG 1 cut(s) 945
BstDSI CCRYGG 2 cut(s) 162, 170
BstF5I GGATG 4 cut(s) 46, 126, 401, 1020
BstFNI CGCG 1 cut(s) 566
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 5 cut(s) 243, 479, 505, 566, 783
BstKTI GATC 9 cut(s) 103, 145, 390, 580, 640, 697, 751, 823, 1036
BstMAI GTCTC 1 cut(s) 674
BstMBI GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
BstMWI GCNNNNNNNGC 6 cut(s) 104, 247, 727, 730, 894, 975
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 9 cut(s) 23, 708, 717, 730, 742, 745, 927, 978, 1011
BsuRI GGCC 2 cut(s) 92, 161
BtgI CCRYGG 2 cut(s) 162, 170
BtsCI GGATG 4 cut(s) 46, 126, 401, 1020
BtsIMutI CAGTG 2 cut(s) 262, 1041
Cac8I GCNNGC 2 cut(s) 109, 507
CciI TCATGA 1 cut(s) 745
CfoI GCGC 5 cut(s) 243, 479, 505, 566, 783
Cfr13I GGNCC 1 cut(s) 830
Csp6I GTAC 4 cut(s) 294, 310, 436, 714
CviQI GTAC 4 cut(s) 294, 310, 436, 714
DdeI CTNAG 1 cut(s) 945
DinI GGCGCC 1 cut(s) 782
DpnI GATC 9 cut(s) 102, 144, 389, 579, 639, 696, 750, 822, 1035
DpnII GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
Eam1104I CTCTTC 3 cut(s) 493, 612, 672
EarI CTCTTC 3 cut(s) 493, 612, 672
Eco130I CCWWGG 3 cut(s) 162, 170, 784
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 830
EcoT14I CCWWGG 3 cut(s) 162, 170, 784
EcoT38I GRGCYC 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 782
EheI GGCGCC 1 cut(s) 782
ErhI CCWWGG 3 cut(s) 162, 170, 784
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 3 cut(s) 197, 373, 943
FauNDI CATATG 1 cut(s) 205
FbaI TGATCA 4 cut(s) 387, 577, 748, 1033
Fnu4HI GCNGC 9 cut(s) 12, 706, 719, 722, 731, 734, 941, 967, 1025
FokI GGATG 4 cut(s) 33, 113, 408, 1027
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 9 cut(s) 12, 706, 719, 722, 731, 734, 941, 967, 1025
FspBI CTAG 1 cut(s) 1055
GlaI GCGC 5 cut(s) 242, 478, 504, 565, 782
GluI GCNGC 9 cut(s) 12, 706, 719, 722, 731, 734, 941, 967, 1025
GsuI CTGGAG 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 2 cut(s) 92, 161
HapII CCGG 3 cut(s) 17, 291, 725
HhaI GCGC 5 cut(s) 243, 479, 505, 566, 783
Hin1I GRCGYC 3 cut(s) 321, 781, 932
Hin6I GCGC 5 cut(s) 241, 477, 503, 564, 781
HinP1I GCGC 5 cut(s) 241, 477, 503, 564, 781
HinfI GANTC 3 cut(s) 490, 871, 949
HpaII CCGG 3 cut(s) 17, 291, 725
HphI GGTGA 2 cut(s) 31, 953
Hpy188I TCNGA 2 cut(s) 279, 483
Hpy188III TCNNGA 5 cut(s) 515, 588, 641, 746, 752
Hpy99I CGWCG 4 cut(s) 326, 695, 893, 974
HpyAV CCTTC 3 cut(s) 206, 274, 667
HpyCH4III ACNGT 4 cut(s) 257, 416, 648, 1045
HpyCH4IV ACGT 4 cut(s) 57, 321, 932, 987
HpyCH4V TGCA 3 cut(s) 25, 419, 430
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 247, 727, 730, 894, 975
HpyF3I CTNAG 1 cut(s) 945
HpySE526I ACGT 4 cut(s) 57, 321, 932, 987
Hsp92I GRCGYC 3 cut(s) 321, 781, 932
HspAI GCGC 5 cut(s) 241, 477, 503, 564, 781
KasI GGCGCC 1 cut(s) 780
Ksp22I TGATCA 4 cut(s) 387, 577, 748, 1033
Kzo9I GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 4 cut(s) 19, 166, 293, 727
Lsp1109I GCAGC 9 cut(s) 23, 708, 717, 730, 742, 745, 927, 978, 1011
LweI GCATC 5 cut(s) 12, 85, 252, 391, 511
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 4 cut(s) 57, 321, 932, 987
MaeIII GTNAC 5 cut(s) 113, 257, 760, 933, 1017
MalI GATC 9 cut(s) 102, 144, 389, 579, 639, 696, 750, 822, 1035
MboI GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
MboII GAAGA 6 cut(s) 324, 510, 530, 629, 677, 689
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 7 cut(s) 354, 528, 633, 793, 834, 838, 1060
Mly113I GGCGCC 1 cut(s) 781
MnlI CCTC 8 cut(s) 33, 89, 202, 233, 360, 607, 920, 1004
MseI TTAA 2 cut(s) 273, 837
MslI CAYNNNNRTG 1 cut(s) 465
MspA1I CMGCKG 3 cut(s) 721, 940, 1024
MspI CCGG 3 cut(s) 17, 291, 725
MvnI CGCG 1 cut(s) 566
MwoI GCNNNNNNNGC 6 cut(s) 104, 247, 727, 730, 894, 975
NarI GGCGCC 1 cut(s) 781
NcoI CCATGG 2 cut(s) 162, 170
NdeI CATATG 1 cut(s) 205
NdeII GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
NlaIV GGNNCC 3 cut(s) 168, 289, 782
NmuCI GTSAC 3 cut(s) 257, 933, 1017
PagI TCATGA 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 3 cut(s) 490, 871, 949
PkrI GCNGC 9 cut(s) 13, 707, 720, 723, 732, 735, 942, 968, 1026
PluTI GGCGCC 1 cut(s) 784
PshBI ATTAAT 1 cut(s) 837
PspN4I GGNNCC 3 cut(s) 168, 289, 782
PspPI GGNCC 1 cut(s) 830
PvuII CAGCTG 3 cut(s) 721, 940, 1024
RsaI GTAC 4 cut(s) 295, 311, 437, 715
RsaNI GTAC 4 cut(s) 294, 310, 436, 714
RseI CAYNNNNRTG 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 273, 837
SatI GCNGC 9 cut(s) 12, 706, 719, 722, 731, 734, 941, 967, 1025
Sau3AI GATC 9 cut(s) 100, 142, 387, 577, 637, 694, 748, 820, 1033
Sau96I GGNCC 1 cut(s) 830
ScaI AGTACT 1 cut(s) 311
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 5 cut(s) 12, 85, 252, 391, 511
SfcI CTRYAG 1 cut(s) 51
SfoI GGCGCC 1 cut(s) 782
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 7 cut(s) 354, 528, 633, 793, 834, 838, 1060
SsiI CCGC 2 cut(s) 595, 964
SspDI GGCGCC 1 cut(s) 780
SspI AATATT 2 cut(s) 74, 1006
SspMI CTAG 1 cut(s) 1055
StyI CCWWGG 3 cut(s) 162, 170, 784
TaaI ACNGT 4 cut(s) 257, 416, 648, 1045
TaiI ACGT 4 cut(s) 60, 324, 935, 990
TaqI TCGA 2 cut(s) 314, 450
TasI AATT 7 cut(s) 354, 528, 633, 793, 834, 838, 1060
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 3 cut(s) 490, 871, 949
Tru1I TTAA 2 cut(s) 273, 837
Tru9I TTAA 2 cut(s) 273, 837
TscAI CASTG 2 cut(s) 262, 1048
TseFI GTSAC 3 cut(s) 257, 933, 1017
TseI GCWGC 9 cut(s) 11, 705, 718, 721, 730, 733, 940, 966, 1024
Tsp45I GTSAC 3 cut(s) 257, 933, 1017
TspDTI ATGAA 6 cut(s) 17, 35, 115, 147, 898, 1016
TspRI CASTG 2 cut(s) 262, 1048
VpaK11BI GGWCC 1 cut(s) 830
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 1 cut(s) 1060
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XspI CTAG 1 cut(s) 1055
ZraI GACGTC 2 cut(s) 322, 933
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.