Rorug03G0211800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000418
Physical Location & Seq
Forward (+)
18985320 .. 18987315
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0211800.1

Sequence Viewer

Length: 1368 bp
ATGGCGACTCCCAATCCCCTCCTCCTCTCTCTCATTTCCCTCTTCTCCCTTTCCCACCTCGCATTCTCATCCAAACTCACACTCCCTCTCACCCTACTCGCCACACACTCCTCCTCCTCAGATCCAATCCAGACCCTCAGCCTCCTCTCCTCCGCCTCACTCTCCCGCGCCCACCACCTCAAACGCCCCAAACACTCCAACTCCTCCACCACCAAAGTCCCTCTCTACCCCCGCAGCTTCGGCGCCTACTCCATTTCCCTCAGCTTCGGCACACCGCCGCAGACCTCCACCTTCGTCATGGACACCGGCAGCAGCCTCGTCTGGTTCCCCTGCACCTCCCGCTATACCTGCTCCAACTGCGTCTTCCCCAACATTGACCCCACCCACATCCCCACCTTCATCCCCAAGCGCTCCTCCACTTCCCGAATCGTCGGCTGCAAAAACCCAAAATGCGCCTGGATTTTCGGCCCCGAAATCAATACCAAATGTCCAAACTCCTCCCAGGCCTGCCCGACGTACCTCATTCAGTACGGCTCCGGCGCCACCGCCGGAGTTTTGCTCTCCGAGTCCCTCGATTTACCCAATAAAACCGTCCCCGATTTCGTCGTCGGCTGCTCTTTCCTCTCGATCCGACAACCCGCCGGAATCGCCGGCTTTGGACGTGGCCCGGAATCCCTCCCCGTCCAAATGGGCCTCTCCAAATTCTCCCACTGCCTAGTCTCCCGCAGATTCGACGACACCCCCGTCAGCAGCGACCTCGTTCTCTACAGCGGCTCCACCTCCGACGACAGTGGTGGCGTCAGCTACACTCCTTTCCAGAAAAACCCCGGCGCCTCCAACTCCGCCTACCGCGAGTACTACTACCTCGCTCTCCGCAAAGTCGTCGTCGGGAAAAAACACGTCAAGATACCGTACAAGTACTTGGTTCCGGGGGCCGACGACAATGGCGGGACCATCGTGGACTCCGGGTCGACGTTCACGTTCATGGAGAGGCCGGTGTTCGAGGCGGTGGCGGAGGCGTTCGCGGCGCAGATGGTGAAGTACACCCGGGCCAAGGACATAGAGAACCGGACCGGGTTGAAGCCGTGCTTTGATATTTCCAAGGAGAAAACGGTGGACTTCCCGGAGCTGGTTTTCCAATTCAAGGGCGGTGCGAAGATGGCATTGCCGTTAAACAATTACTTCGCTCTGGTCACCACCGGCGGCGTTGTGTGCTTGACCATCGTCACGGACGGGGTGGCGGGGCCCAGCGTGGCGAGTAGTGGGCCCGCGATTATTTTGGGGAGTTTCCAGCAGCAGAATTTTTACGTCGAGTACGATTTGGCGCACGATCGGTTCGGGTTTAGGAAACAGAGCTGTAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

455

Amino Acids

49.22

Weight (kDa)

9.13

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 83 - 241 8.9e-29 Xylanase inhibitor N-terminal
Asp PF00026 83 - 448 2.6e-18 Eukaryotic aspartyl protease
TAXi_C PF14541 287 - 449 1.4e-31 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 743
Acc36I ACCTGC 1 cut(s) 356
AccB1I GGYRCC 3 cut(s) 242, 539, 830
AccI GTMKAC 1 cut(s) 971
AccII CGCG 4 cut(s) 168, 852, 1025, 1271
AclWI GGATC 2 cut(s) 116, 622
AcsI RAATTY 2 cut(s) 701, 1300
AcyI GRCGYC 4 cut(s) 243, 540, 798, 831
AfaI GTAC 7 cut(s) 518, 530, 857, 914, 920, 1043, 1316
AfeI AGCGCT 1 cut(s) 410
AfiI CCNNNNNNNGG 3 cut(s) 1054, 1129, 1144
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 2 cut(s) 1081, 1144
AhdI GACNNNNNGTC 1 cut(s) 967
AjiI CACGTC 2 cut(s) 662, 901
AjnI CCWGG 2 cut(s) 455, 501
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AluBI AGCT 5 cut(s) 237, 264, 804, 1129, 1356
AluI AGCT 5 cut(s) 237, 264, 804, 1129, 1356
Alw26I GTCTC 1 cut(s) 724
AlwI GGATC 2 cut(s) 116, 622
Ama87I CYCGRG 1 cut(s) 1047
Aor51HI AGCGCT 1 cut(s) 410
AoxI GGCC 9 cut(s) 466, 504, 664, 691, 933, 992, 1050, 1244, 1265
ApaI GGGCCC 2 cut(s) 1248, 1269
ApeKI GCWGC 7 cut(s) 234, 309, 312, 435, 612, 750, 1294
ApoI RAATTY 2 cut(s) 701, 1300
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AspLEI GCGC 8 cut(s) 170, 245, 411, 455, 542, 833, 1030, 1327
AsuC2I CCSGG 8 cut(s) 668, 828, 930, 967, 1048, 1049, 1075, 1124
AsuHPI GGTGA 3 cut(s) 82, 1048, 1186
AvaI CYCGRG 1 cut(s) 1047
AvaII GGWCC 2 cut(s) 951, 1071
BaeGI GKGCMC 2 cut(s) 1248, 1269
BanI GGYRCC 3 cut(s) 242, 539, 830
BanII GRGCYC 2 cut(s) 1248, 1269
BbsI GAAGAC 1 cut(s) 355
BbvCI CCTCAGC 2 cut(s) 137, 260
BbvI GCAGC 7 cut(s) 246, 321, 324, 422, 599, 762, 1306
BccI CCATC 4 cut(s) 962, 1027, 1153, 1229
BceAI ACGGC 3 cut(s) 547, 1069, 1153
BcgI CGANNNNNNTGC 6 cut(s) 298, 332, 739, 773, 865, 899
BciT130I CCWGG 2 cut(s) 457, 503
BcnI CCSGG 8 cut(s) 668, 828, 930, 967, 1048, 1049, 1075, 1124
BcoDI GTCTC 1 cut(s) 724
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 1 cut(s) 766
BfoI RGCGCY 4 cut(s) 246, 412, 543, 834
BfuAI ACCTGC 1 cut(s) 356
BmcAI AGTACT 2 cut(s) 857, 920
Bme18I GGWCC 2 cut(s) 951, 1071
BmeRI GACNNNNNGTC 1 cut(s) 967
BmeT110I CYCGRG 1 cut(s) 1047
BmgBI CACGTC 2 cut(s) 662, 901
BoxI GACNNNNGTC 1 cut(s) 1223
BpiI GAAGAC 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 543, 575
Bpu10I CCTNAGC 2 cut(s) 137, 260
BpuMI CCSGG 8 cut(s) 668, 828, 930, 967, 1048, 1049, 1075, 1124
BsaHI GRCGYC 4 cut(s) 243, 540, 798, 831
BsaJI CCNNGG 6 cut(s) 501, 826, 929, 1047, 1053, 1101
BsaWI WCCGGW 1 cut(s) 1068
BsaXI ACNNNNNCTCC 8 cut(s) 66, 96, 98, 128, 185, 215, 758, 788
Bsc4I CCNNNNNNNGG 3 cut(s) 1054, 1129, 1144
Bse118I RCCGGY 4 cut(s) 305, 650, 994, 1199
Bse3DI GCAATG 1 cut(s) 1163
BseBI CCWGG 2 cut(s) 457, 503
BseDI CCNNGG 6 cut(s) 501, 826, 929, 1047, 1053, 1101
BseGI GGATG 3 cut(s) 68, 387, 399
BseLI CCNNNNNNNGG 3 cut(s) 1054, 1129, 1144
BseMI GCAATG 1 cut(s) 1163
BseMII CTCAG 3 cut(s) 132, 151, 274
BseSI GKGCMC 2 cut(s) 1248, 1269
BseXI GCAGC 7 cut(s) 246, 321, 324, 422, 599, 762, 1306
BseYI CCCAGC 1 cut(s) 1247
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 4 cut(s) 168, 852, 1025, 1271
Bsh1285I CGRYCG 1 cut(s) 1333
BshFI GGCC 9 cut(s) 468, 506, 666, 693, 935, 994, 1052, 1246, 1267
BshNI GGYRCC 3 cut(s) 242, 539, 830
BsiEI CGRYCG 1 cut(s) 1333
BsiHKCI CYCGRG 1 cut(s) 1047
BslFI GGGAC 4 cut(s) 203, 553, 578, 964
BslI CCNNNNNNNGG 3 cut(s) 1054, 1129, 1144
BsmAI GTCTC 1 cut(s) 724
BsmFI GGGAC 4 cut(s) 203, 553, 578, 964
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 9 cut(s) 468, 506, 666, 693, 935, 994, 1052, 1246, 1267
BsoBI CYCGRG 1 cut(s) 1047
Bsp120I GGGCCC 2 cut(s) 1244, 1265
Bsp1286I GDGCHC 2 cut(s) 1248, 1269
Bsp143I GATC 3 cut(s) 121, 627, 1330
BspANI GGCC 9 cut(s) 468, 506, 666, 693, 935, 994, 1052, 1246, 1267
BspCNI CTCAG 3 cut(s) 131, 150, 273
BspFNI CGCG 4 cut(s) 168, 852, 1025, 1271
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 2 cut(s) 116, 622
BspT107I GGYRCC 3 cut(s) 242, 539, 830
BsrDI GCAATG 1 cut(s) 1163
BsrFI RCCGGY 4 cut(s) 305, 650, 994, 1199
BssAI RCCGGY 4 cut(s) 305, 650, 994, 1199
BssECI CCNNGG 6 cut(s) 501, 826, 929, 1047, 1053, 1101
BssMI GATC 3 cut(s) 121, 627, 1330
BssNI GRCGYC 4 cut(s) 243, 540, 798, 831
BssT1I CCWWGG 2 cut(s) 1053, 1101
Bst2UI CCWGG 2 cut(s) 457, 503
Bst4CI ACNGT 4 cut(s) 592, 791, 912, 1114
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 4 cut(s) 243, 540, 798, 831
BstC8I GCNNGC 3 cut(s) 508, 652, 1269
BstDEI CTNAG 3 cut(s) 118, 137, 260
BstEII GGTNACC 1 cut(s) 1192
BstF5I GGATG 3 cut(s) 68, 387, 399
BstFNI CGCG 4 cut(s) 168, 852, 1025, 1271
BstH2I RGCGCY 4 cut(s) 246, 412, 543, 834
BstHHI GCGC 8 cut(s) 170, 245, 411, 455, 542, 833, 1030, 1327
BstKTI GATC 3 cut(s) 124, 630, 1333
BstMAI GTCTC 1 cut(s) 724
BstMBI GATC 3 cut(s) 121, 627, 1330
BstMCI CGRYCG 1 cut(s) 1333
BstMWI GCNNNNNNNGC 8 cut(s) 240, 339, 348, 357, 647, 1025, 1160, 1212
BstNI CCWGG 2 cut(s) 457, 503
BstPAI GACNNNNGTC 1 cut(s) 1223
BstPI GGTNACC 1 cut(s) 1192
BstSFI CTRYAG 1 cut(s) 766
BstSLI GKGCMC 2 cut(s) 1248, 1269
BstUI CGCG 4 cut(s) 168, 852, 1025, 1271
BstV1I GCAGC 7 cut(s) 246, 321, 324, 422, 599, 762, 1306
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 9 cut(s) 468, 506, 666, 693, 935, 994, 1052, 1246, 1267
BtrI CACGTC 2 cut(s) 662, 901
BtsCI GGATG 3 cut(s) 68, 387, 399
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 709, 796
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 3 cut(s) 508, 652, 1269
CfoI GCGC 8 cut(s) 170, 245, 411, 455, 542, 833, 1030, 1327
Cfr10I RCCGGY 4 cut(s) 305, 650, 994, 1199
Cfr9I CCCGGG 1 cut(s) 1047
CpoI CGGWCCG 1 cut(s) 1071
CseI GACGC 2 cut(s) 349, 787
Csp6I GTAC 7 cut(s) 517, 529, 856, 913, 919, 1042, 1315
CspI CGGWCCG 1 cut(s) 1071
CviAII CATG 2 cut(s) 298, 985
CviQI GTAC 7 cut(s) 517, 529, 856, 913, 919, 1042, 1315
DdeI CTNAG 3 cut(s) 118, 137, 260
DinI GGCGCC 3 cut(s) 244, 541, 832
DpnI GATC 3 cut(s) 123, 629, 1332
DpnII GATC 3 cut(s) 121, 627, 1330
DrdI GACNNNNNNGTC 1 cut(s) 743
DriI GACNNNNNGTC 1 cut(s) 967
DseDI GACNNNNNNGTC 1 cut(s) 743
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 967
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 3 cut(s) 142, 832, 1028
Eco130I CCWWGG 2 cut(s) 1053, 1101
Eco147I AGGCCT 1 cut(s) 506
Eco24I GRGCYC 2 cut(s) 1248, 1269
Eco47I GGWCC 2 cut(s) 951, 1071
Eco47III AGCGCT 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 1047
Eco91I GGTNACC 1 cut(s) 1192
EcoO109I RGGNCCY 1 cut(s) 1244
EcoO65I GGTNACC 1 cut(s) 1192
EcoRII CCWGG 2 cut(s) 455, 501
EcoT14I CCWWGG 2 cut(s) 1053, 1101
EcoT38I GRGCYC 2 cut(s) 1248, 1269
EgeI GGCGCC 3 cut(s) 244, 541, 832
EheI GGCGCC 3 cut(s) 244, 541, 832
ErhI CCWWGG 2 cut(s) 1053, 1101
FaeI CATG 2 cut(s) 301, 988
FaiI YATR 4 cut(s) 299, 345, 986, 1061
FalI AAGNNNNNCTT 2 cut(s) 1073, 1105
FaqI GGGAC 4 cut(s) 203, 553, 578, 964
FatI CATG 2 cut(s) 297, 984
FauI CCCGC 8 cut(s) 173, 239, 347, 646, 731, 941, 1234, 1276
FblI GTMKAC 1 cut(s) 971
FokI GGATG 3 cut(s) 55, 374, 386
FriOI GRGCYC 2 cut(s) 1248, 1269
FspBI CTAG 1 cut(s) 716
GlaI GCGC 8 cut(s) 169, 244, 410, 454, 541, 832, 1029, 1326
GsaI CCCAGC 1 cut(s) 1251
HaeII RGCGCY 4 cut(s) 246, 412, 543, 834
HaeIII GGCC 9 cut(s) 468, 506, 666, 693, 935, 994, 1052, 1246, 1267
HgaI GACGC 2 cut(s) 349, 787
HhaI GCGC 8 cut(s) 170, 245, 411, 455, 542, 833, 1030, 1327
Hin1I GRCGYC 4 cut(s) 243, 540, 798, 831
Hin1II CATG 2 cut(s) 301, 988
Hin6I GCGC 8 cut(s) 168, 243, 409, 453, 540, 831, 1028, 1325
HinP1I GCGC 8 cut(s) 168, 243, 409, 453, 540, 831, 1028, 1325
HincII GTYRAC 1 cut(s) 972
HindII GTYRAC 1 cut(s) 972
HinfI GANTC 7 cut(s) 7, 426, 566, 645, 671, 729, 962
HphI GGTGA 3 cut(s) 82, 1048, 1186
Hpy166II GTNNAC 5 cut(s) 961, 972, 978, 1044, 1117
Hpy188I TCNGA 4 cut(s) 121, 565, 632, 784
Hpy188III TCNNGA 6 cut(s) 130, 423, 625, 817, 889, 904
Hpy8I GTNNAC 5 cut(s) 961, 972, 978, 1044, 1117
HpyAV CCTTC 2 cut(s) 301, 406
HpyCH4III ACNGT 4 cut(s) 592, 791, 912, 1114
HpyCH4IV ACGT 6 cut(s) 515, 661, 900, 974, 980, 1308
HpyCH4V TGCA 2 cut(s) 333, 438
HpyF10VI GCNNNNNNNGC 8 cut(s) 240, 339, 348, 357, 647, 1025, 1160, 1212
HpyF3I CTNAG 3 cut(s) 118, 137, 260
HpySE526I ACGT 6 cut(s) 515, 661, 900, 974, 980, 1308
Hsp92I GRCGYC 4 cut(s) 243, 540, 798, 831
Hsp92II CATG 2 cut(s) 301, 988
HspAI GCGC 8 cut(s) 168, 243, 409, 453, 540, 831, 1028, 1325
KasI GGCGCC 3 cut(s) 242, 539, 830
KroI GCCGGC 1 cut(s) 650
KroNI GCCGGC 1 cut(s) 652
Kzo9I GATC 3 cut(s) 121, 627, 1330
LmnI GCTCC 5 cut(s) 356, 416, 539, 779, 1126
Lsp1109I GCAGC 7 cut(s) 246, 321, 324, 422, 599, 762, 1306
MaeI CTAG 1 cut(s) 716
MaeII ACGT 6 cut(s) 515, 661, 900, 974, 980, 1308
MaeIII GTNAC 2 cut(s) 1192, 1225
MalI GATC 3 cut(s) 123, 629, 1332
MboI GATC 3 cut(s) 121, 627, 1330
MboII GAAGA 3 cut(s) 34, 355, 1168
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 1248, 1269
MluCI AATT 4 cut(s) 701, 1139, 1177, 1300
Mly113I GGCGCC 3 cut(s) 243, 540, 831
MlyI GAGTC 2 cut(s) 575, 956
MmeI TCCRAC 5 cut(s) 222, 378, 655, 807, 861
MroNI GCCGGC 1 cut(s) 650
MseI TTAA 1 cut(s) 1172
MslI CAYNNNNRTG 1 cut(s) 983
MspA1I CMGCKG 1 cut(s) 771
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 2 cut(s) 457, 503
MvnI CGCG 4 cut(s) 168, 852, 1025, 1271
MwoI GCNNNNNNNGC 8 cut(s) 240, 339, 348, 357, 647, 1025, 1160, 1212
NaeI GCCGGC 1 cut(s) 652
NarI GGCGCC 3 cut(s) 243, 540, 831
NciI CCSGG 8 cut(s) 668, 828, 930, 967, 1048, 1049, 1075, 1124
NdeII GATC 3 cut(s) 121, 627, 1330
NgoMIV GCCGGC 1 cut(s) 650
NlaIII CATG 2 cut(s) 301, 988
NmuCI GTSAC 2 cut(s) 1192, 1225
PceI AGGCCT 1 cut(s) 506
PcsI WCGNNNNNNNCGW 3 cut(s) 741, 977, 1314
PctI GAATGC 1 cut(s) 62
PdiI GCCGGC 1 cut(s) 652
PfeI GAWTC 4 cut(s) 426, 645, 671, 729
PfoI TCCNGGA 1 cut(s) 1122
Ple19I CGATCG 1 cut(s) 1333
PleI GAGTC 2 cut(s) 574, 956
PluTI GGCGCC 3 cut(s) 246, 543, 834
PpsI GAGTC 2 cut(s) 574, 956
PshAI GACNNNNGTC 1 cut(s) 1223
Psp6I CCWGG 2 cut(s) 455, 501
PspEI GGTNACC 1 cut(s) 1192
PspFI CCCAGC 1 cut(s) 1247
PspGI CCWGG 2 cut(s) 455, 501
PspOMI GGGCCC 2 cut(s) 1244, 1265
PsuI RGATCY 1 cut(s) 121
PvuI CGATCG 1 cut(s) 1333
RsaI GTAC 7 cut(s) 518, 530, 857, 914, 920, 1043, 1316
RsaNI GTAC 7 cut(s) 517, 529, 856, 913, 919, 1042, 1315
RseI CAYNNNNRTG 1 cut(s) 983
Rsr2I CGGWCCG 1 cut(s) 1071
RsrII CGGWCCG 1 cut(s) 1071
SalI GTCGAC 1 cut(s) 970
SaqAI TTAA 1 cut(s) 1172
Sau3AI GATC 3 cut(s) 121, 627, 1330
ScaI AGTACT 2 cut(s) 857, 920
SchI GAGTC 2 cut(s) 575, 956
SduI GDGCHC 2 cut(s) 1248, 1269
SfcI CTRYAG 1 cut(s) 766
SfoI GGCGCC 3 cut(s) 244, 541, 832
SgrAI CRCCGGYG 1 cut(s) 1199
SinI GGWCC 2 cut(s) 951, 1071
SmaI CCCGGG 1 cut(s) 1049
SmiMI CAYNNNNRTG 1 cut(s) 983
Sse9I AATT 4 cut(s) 701, 1139, 1177, 1300
SseBI AGGCCT 1 cut(s) 506
SspDI GGCGCC 3 cut(s) 242, 539, 830
SspMI CTAG 1 cut(s) 716
StuI AGGCCT 1 cut(s) 506
StyI CCWWGG 2 cut(s) 1053, 1101
TaaI ACNGT 4 cut(s) 592, 791, 912, 1114
TaiI ACGT 6 cut(s) 518, 664, 903, 977, 983, 1311
TaqI TCGA 6 cut(s) 573, 626, 732, 971, 1002, 1311
TasI AATT 4 cut(s) 701, 1139, 1177, 1300
TatI WGTACW 3 cut(s) 855, 918, 1041
TauI GCSGC 4 cut(s) 280, 774, 1028, 1206
TfiI GAWTC 4 cut(s) 426, 645, 671, 729
Tru1I TTAA 1 cut(s) 1172
Tru9I TTAA 1 cut(s) 1172
TscAI CASTG 2 cut(s) 716, 796
TseFI GTSAC 2 cut(s) 1192, 1225
TseI GCWGC 7 cut(s) 234, 309, 312, 435, 612, 750, 1294
Tsp45I GTSAC 2 cut(s) 1192, 1225
TspDTI ATGAA 2 cut(s) 388, 973
TspGWI ACGGA 1 cut(s) 1244
TspMI CCCGGG 1 cut(s) 1047
TspRI CASTG 2 cut(s) 716, 796
VpaK11BI GGWCC 2 cut(s) 951, 1071
XapI RAATTY 2 cut(s) 701, 1300
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 453
XmaI CCCGGG 1 cut(s) 1047
XmiI GTMKAC 1 cut(s) 971
XspI CTAG 1 cut(s) 716
ZrmI AGTACT 2 cut(s) 857, 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.