RchiOBHm_Chr5g0048911
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000418
Physical Location & Seq
Reverse (-)
46245744 .. 46246618
875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32659

Sequence Viewer

Length: 780 bp
ATGGCAATTCTCTCCAACAAACTCCCAGTCGGGGTCAGGTTCCTTCCCACAGACCACGAACTCCTCGATTACTTTCTCCGCACCAGGATTGCCATGGGTGACCACTTTCACTCCGATTTCGTCGCCGATTGTCCTCATTTTTACGTAGACAATGAGCCCTGGGTTGTCTGGCAAATCCACGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAAGACCATCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCGCCAAGCGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGCCGGCACTTGGAGCGGGACTTCCGATACGAGGGCGGTTGTGATTCTCGTCACAACGAGGCTTGGCTGATGCAAGAGTTTCAGCTCATTGATGATCATTCTGATTTTGTACTGTGCAGTTTGAGAAAGAACCCTAGAAAGGCACCACCAACCCCAACTGCTCAGGGGAGCAATGTTGTTGAAAATACCAGAGTAGTTAATGATAAAAAGAGAAAGAGCATTGTGGATCAACCCAGAAAGCCAAAATCGAAAAAGCAGAAGAAGGAAGGGAGTTGTCATCAGGAAGAAGGCAGCAGTACTCTTCATCCCAATTACGAGTTGCCCTATCCACAAATGGATGATCTAGATTTTTATTTTCCTGAGATTTATCCAGAGCTGTTTGTTGATGATGAGCGTGATTTATTTACTATGGATGAATTACTTGGACAGAGTTGGGAGGAGGGCAACAACTTCAATTTGGTTACAGGAGTACCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

259

Amino Acids

30.28

Weight (kDa)

5.89

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 102 3.8e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 147
AciI CCGC 6 cut(s) 79, 183, 186, 258, 313, 333
AclWI GGATC 1 cut(s) 531
AfaI GTAC 3 cut(s) 408, 595, 768
AfiI CCNNNNNNNGG 5 cut(s) 31, 294, 307, 328, 436
AgsI TTSAA 2 cut(s) 479, 751
AjnI CCWGG 2 cut(s) 83, 158
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 2 cut(s) 382, 673
AluI AGCT 2 cut(s) 382, 673
AlwI GGATC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 588
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AsuHPI GGTGA 3 cut(s) 110, 200, 223
BaeI ACNNNNGTAYC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 600
BccI CCATC 2 cut(s) 227, 243
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 85, 160
BclI TGATCA 1 cut(s) 391
BfaI CTAG 2 cut(s) 432, 641
BisI GCNGC 2 cut(s) 184, 589
BlsI GCNGC 2 cut(s) 185, 590
BmcAI AGTACT 1 cut(s) 595
Bme1390I CCNGG 2 cut(s) 85, 160
BmiI GGNNCC 4 cut(s) 41, 286, 299, 441
BmrFI CCNGG 2 cut(s) 85, 160
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 459
BsaAI YACGTR 1 cut(s) 145
BsaJI CCNNGG 4 cut(s) 93, 158, 159, 178
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 294, 307, 328, 436
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 2 cut(s) 85, 160
BseDI CCNNGG 4 cut(s) 93, 158, 159, 178
BseGI GGATG 4 cut(s) 214, 601, 640, 715
BseLI CCNNNNNNNGG 5 cut(s) 31, 294, 307, 328, 436
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 3 cut(s) 239, 473, 648
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 2 cut(s) 53, 749
BseXI GCAGC 1 cut(s) 600
BsgI GTGCAG 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 439
BsiSI CCGG 2 cut(s) 288, 301
BslFI GGGAC 2 cut(s) 237, 329
BslI CCNNNNNNNGG 5 cut(s) 31, 294, 307, 328, 436
BsmFI GGGAC 2 cut(s) 237, 329
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 4 cut(s) 271, 391, 523, 637
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 79, 183, 186, 258, 313, 333
BspCNI CTCAG 3 cut(s) 240, 472, 649
BspLI GGNNCC 4 cut(s) 41, 286, 299, 441
BspPI GGATC 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 439
BsrBI CCGCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 475
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 93, 158, 159, 178
BssMI GATC 4 cut(s) 271, 391, 523, 637
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 2 cut(s) 85, 160
Bst4CI ACNGT 1 cut(s) 411
Bst6I CTCTTC 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 3 cut(s) 248, 459, 657
BstDSI CCRYGG 2 cut(s) 93, 178
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 4 cut(s) 214, 601, 640, 715
BstKTI GATC 4 cut(s) 274, 394, 526, 640
BstMBI GATC 4 cut(s) 271, 391, 523, 637
BstMWI GCNNNNNNNGC 2 cut(s) 297, 310
BstNI CCWGG 2 cut(s) 85, 160
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 83, 158
BstSNI TACGTA 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 202
BtgI CCRYGG 2 cut(s) 93, 178
BtsCI GGATG 4 cut(s) 214, 601, 640, 715
Cac8I GCNNGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 300
Csp6I GTAC 3 cut(s) 407, 594, 767
CviAII CATG 1 cut(s) 94
CviJI RGCY 8 cut(s) 157, 247, 300, 359, 364, 382, 538, 673
CviKI_1 RGCY 8 cut(s) 157, 247, 300, 359, 364, 382, 538, 673
CviQI GTAC 3 cut(s) 407, 594, 767
DdeI CTNAG 3 cut(s) 248, 459, 657
DpnI GATC 4 cut(s) 273, 393, 525, 639
DpnII GATC 4 cut(s) 271, 391, 523, 637
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco105I TACGTA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 83, 158
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 707
FaqI GGGAC 2 cut(s) 237, 329
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 306
FbaI TGATCA 1 cut(s) 391
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 184, 589
FokI GGATG 4 cut(s) 221, 588, 647, 722
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 184, 589
FspBI CTAG 2 cut(s) 432, 641
GluI GCNGC 2 cut(s) 184, 589
HapII CCGG 2 cut(s) 288, 301
Hin1II CATG 1 cut(s) 97
HinfI GANTC 3 cut(s) 191, 250, 341
HpaII CCGG 2 cut(s) 288, 301
HphI GGTGA 3 cut(s) 110, 200, 223
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 5 cut(s) 115, 240, 276, 323, 400
Hpy188III TCNNGA 4 cut(s) 578, 641, 656, 668
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 53, 237, 553, 557, 578
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 370, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 310
HpyF3I CTNAG 3 cut(s) 248, 459, 657
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 97
KroI GCCGGC 1 cut(s) 300
KroNI GCCGGC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 4 cut(s) 271, 391, 523, 637
LmnI GCTCC 3 cut(s) 297, 310, 465
Lsp1109I GCAGC 1 cut(s) 600
LweI GCATC 1 cut(s) 357
MaeI CTAG 2 cut(s) 432, 641
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 98, 347, 757
MalI GATC 4 cut(s) 273, 393, 525, 639
MbiI CCGCTC 1 cut(s) 313
MboI GATC 4 cut(s) 271, 391, 523, 637
MboII GAAGA 4 cut(s) 220, 568, 590, 593
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 4 cut(s) 6, 607, 713, 751
MlyI GAGTC 2 cut(s) 200, 259
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 7 cut(s) 74, 144, 199, 322, 349, 727, 730
MroNI GCCGGC 1 cut(s) 300
MseI TTAA 1 cut(s) 495
MspI CCGG 2 cut(s) 288, 301
MspR9I CCNGG 2 cut(s) 85, 160
MvaI CCWGG 2 cut(s) 85, 160
MwoI GCNNNNNNNGC 2 cut(s) 297, 310
NaeI GCCGGC 1 cut(s) 302
NcoI CCATGG 1 cut(s) 93
NdeII GATC 4 cut(s) 271, 391, 523, 637
NgoMIV GCCGGC 1 cut(s) 300
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 4 cut(s) 41, 286, 299, 441
NmuCI GTSAC 2 cut(s) 98, 347
PasI CCCWGGG 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 185, 590
PleI GAGTC 2 cut(s) 199, 258
PpsI GAGTC 2 cut(s) 199, 258
Ppu21I YACGTR 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 83, 158
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 2 cut(s) 83, 158
PspN4I GGNNCC 4 cut(s) 41, 286, 299, 441
RsaI GTAC 3 cut(s) 408, 595, 768
RsaNI GTAC 3 cut(s) 407, 594, 767
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 2 cut(s) 184, 589
Sau3AI GATC 4 cut(s) 271, 391, 523, 637
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 2 cut(s) 200, 259
ScrFI CCNGG 2 cut(s) 85, 160
SduI GDGCHC 1 cut(s) 159
SetI ASST 4 cut(s) 41, 147, 384, 675
SfaNI GCATC 1 cut(s) 357
SnaBI TACGTA 1 cut(s) 145
Sse9I AATT 4 cut(s) 6, 607, 713, 751
SsiI CCGC 6 cut(s) 79, 183, 186, 258, 313, 333
SspMI CTAG 2 cut(s) 432, 641
StyD4I CCNGG 2 cut(s) 83, 158
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 66, 545
TasI AATT 4 cut(s) 6, 607, 713, 751
TatI WGTACW 2 cut(s) 406, 593
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TseFI GTSAC 2 cut(s) 98, 347
TseI GCWGC 1 cut(s) 588
Tsp45I GTSAC 2 cut(s) 98, 347
TspDTI ATGAA 3 cut(s) 225, 590, 726
XbaI TCTAGA 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 2 cut(s) 432, 641
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.