Rw5G028760
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000418
Physical Location & Seq
Forward (+)
43670279 .. 43671067
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028760.1

Sequence Viewer

Length: 789 bp
ATGGCAATTCTCTCCAACAAACTCCCAGTCGGGGTCAGGTTCCTTCCCACTGACCAGGAACTGCTCGATTACTATCTCCGCACAAGGATCGCCATGGGTGACCAGTTTCGCACCGATTTCGTCGCCGATTGTCCTCATTTCTACGGAGACAAGGAGCCCTGGGTTGTCTGGCAGATCTACGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAACACTCTCTATTTCTTCACCAATCGGAGAAGGCTGAGTCCCACCGCTAAGAGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGTGCTCAGTATGCGAGAGAAGTTGAGGATGATGGTGTTGTAATTGGGCTCAAGCGGGAGTTTCGATACGAGGGCGGTTGTGACGAGAGTCACAACGACGCGTGGTTGATGCAAGAGTTTCAGCTTGATGATGATTCTGATTTGGTATTGTGCTCTCTGAGAAAGAACCCTAGAAAGGCTCAGGGGAGCAATACCAGGGTAGTTAATGAAAAAAAGAGAAAGAGCATTCCACAACCCAGAAAGCCAAAATCTAAAAAGCAGAAGAAGGGAGGGAGTTGTCATCAGGAAGAAGGGAGCACTACTGTTCATCCCAATTACGAGTTACCCTATCCACAAATGGATGATCTAGATTTTTGTCTTCCTGAGATTTATCCAGATCTGTTTGTTGATGATGAGCGTGATTTAATTAATATGGATGAATTGCTTGGACAAGCCCCAGTTTGGGAGGAGGGCAACAACTTCGATTTGGTTACAGGAGTACCACTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

262

Amino Acids

30.25

Weight (kDa)

5.12

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 141 1.4e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 398
AciI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
AclWI GGATC 1 cut(s) 95
AfaI GTAC 1 cut(s) 777
AfiI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 738, 739
AflIII ACRYGT 1 cut(s) 396
AjnI CCWGG 3 cut(s) 54, 158, 491
AloI GAACNNNNNNTCC 2 cut(s) 268, 300
AluBI AGCT 1 cut(s) 421
AluI AGCT 1 cut(s) 421
Alw21I GWGCWC 3 cut(s) 304, 452, 596
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 61
ArsI GACNNNNNNTTYG 2 cut(s) 12, 44
AseI ATTAAT 1 cut(s) 705
AsuHPI GGTGA 3 cut(s) 110, 200, 223
BaeI ACNNNNGTAYC 1 cut(s) 759
BanII GRGCYC 2 cut(s) 159, 348
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 3 cut(s) 304, 452, 596
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 6 cut(s) 70, 100, 104, 134, 739, 773
BciT130I CCWGG 3 cut(s) 56, 160, 493
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 2 cut(s) 468, 644
BglII AGATCT 2 cut(s) 174, 673
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 3 cut(s) 56, 160, 493
BmiI GGNNCC 3 cut(s) 41, 156, 286
BmrFI CCNGG 3 cut(s) 56, 160, 493
BmrI ACTGGG 2 cut(s) 20, 728
BmsI GCATC 1 cut(s) 396
BmuI ACTGGG 2 cut(s) 20, 728
BoxI GACNNNNGTC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 647
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 4 cut(s) 93, 158, 159, 492
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 294, 472, 738, 739
Bse1I ACTGG 3 cut(s) 26, 103, 734
Bse8I GATNNNNATC 1 cut(s) 72
BseBI CCWGG 3 cut(s) 56, 160, 493
BseDI CCNNGG 4 cut(s) 93, 158, 159, 492
BseGI GGATG 5 cut(s) 214, 331, 604, 643, 718
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 738, 739
BseMII CTCAG 5 cut(s) 239, 317, 446, 491, 651
BseNI ACTGG 3 cut(s) 26, 103, 734
BseRI GAGGAG 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 398
BsiHKAI GWGCWC 3 cut(s) 304, 452, 596
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 5 cut(s) 31, 294, 472, 738, 739
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 237
BsmI GAATGC 1 cut(s) 522
Bsp1286I GDGCHC 5 cut(s) 159, 304, 348, 452, 596
Bsp143I GATC 5 cut(s) 87, 174, 271, 640, 673
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
BspCNI CTCAG 5 cut(s) 240, 316, 447, 490, 652
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 41, 156, 286
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 3 cut(s) 26, 103, 734
BssECI CCNNGG 4 cut(s) 93, 158, 159, 492
BssMI GATC 5 cut(s) 87, 174, 271, 640, 673
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 3 cut(s) 56, 160, 493
Bst4CI ACNGT 1 cut(s) 601
BstDEI CTNAG 6 cut(s) 248, 261, 303, 455, 477, 660
BstDSI CCRYGG 1 cut(s) 93
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 5 cut(s) 214, 331, 604, 643, 718
BstFNI CGCG 1 cut(s) 398
BstKTI GATC 5 cut(s) 90, 177, 274, 643, 676
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 5 cut(s) 87, 174, 271, 640, 673
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 3 cut(s) 56, 160, 493
BstPAI GACNNNNGTC 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 3 cut(s) 54, 158, 491
BstUI CGCG 1 cut(s) 398
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 2 cut(s) 174, 673
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 2 cut(s) 174, 673
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 5 cut(s) 214, 331, 604, 643, 718
BtsIMutI CAGTG 1 cut(s) 48
CaiI CAGNNNCTG 1 cut(s) 61
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 776
CviAII CATG 1 cut(s) 94
CviJI RGCY 7 cut(s) 157, 247, 346, 421, 476, 541, 731
CviKI_1 RGCY 7 cut(s) 157, 247, 346, 421, 476, 541, 731
CviQI GTAC 1 cut(s) 776
DdeI CTNAG 6 cut(s) 248, 261, 303, 455, 477, 660
DpnI GATC 5 cut(s) 89, 176, 273, 642, 675
DpnII GATC 5 cut(s) 87, 174, 271, 640, 673
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 159, 348
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 3 cut(s) 54, 158, 491
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 159, 348
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 95, 309, 710
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 5 cut(s) 221, 338, 591, 650, 725
FriOI GRGCYC 2 cut(s) 159, 348
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 2 cut(s) 468, 644
GluI GCNGC 1 cut(s) 184
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 404
Hin1II CATG 1 cut(s) 97
HinfI GANTC 4 cut(s) 191, 250, 385, 431
HpaII CCGG 1 cut(s) 288
HphI GGTGA 3 cut(s) 110, 200, 223
Hpy188I TCNGA 4 cut(s) 240, 276, 436, 456
Hpy188III TCNNGA 4 cut(s) 581, 644, 659, 671
Hpy99I CGWCG 2 cut(s) 125, 398
HpyAV CCTTC 4 cut(s) 53, 237, 556, 581
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4V TGCA 1 cut(s) 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 6 cut(s) 248, 261, 303, 455, 477, 660
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 5 cut(s) 87, 174, 271, 640, 673
LmnI GCTCC 3 cut(s) 154, 483, 591
LweI GCATC 1 cut(s) 396
MaeI CTAG 2 cut(s) 468, 644
MaeIII GTNAC 5 cut(s) 98, 377, 386, 618, 766
MalI GATC 5 cut(s) 89, 176, 273, 642, 675
MboI GATC 5 cut(s) 87, 174, 271, 640, 673
MboII GAAGA 4 cut(s) 220, 571, 596, 647
MflI RGATCY 2 cut(s) 174, 673
MhlI GDGCHC 5 cut(s) 159, 304, 348, 452, 596
MluCI AATT 5 cut(s) 6, 339, 610, 702, 716
MluI ACGCGT 1 cut(s) 396
MlyI GAGTC 3 cut(s) 200, 259, 394
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 7 cut(s) 144, 199, 316, 361, 560, 736, 739
MseI TTAA 3 cut(s) 501, 701, 705
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 3 cut(s) 56, 160, 493
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 3 cut(s) 56, 160, 493
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 308
NcoI CCATGG 1 cut(s) 93
NdeII GATC 5 cut(s) 87, 174, 271, 640, 673
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 41, 156, 286
NmuCI GTSAC 3 cut(s) 98, 377, 386
PacI TTAATTAA 1 cut(s) 705
PasI CCCWGGG 1 cut(s) 159
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 3 cut(s) 199, 258, 393
PpsI GAGTC 3 cut(s) 199, 258, 393
PshAI GACNNNNGTC 1 cut(s) 384
PshBI ATTAAT 1 cut(s) 705
Psp6I CCWGG 3 cut(s) 54, 158, 491
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 54, 158, 491
PspN4I GGNNCC 3 cut(s) 41, 156, 286
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 2 cut(s) 174, 673
RsaI GTAC 1 cut(s) 777
RsaNI GTAC 1 cut(s) 776
SaqAI TTAA 3 cut(s) 501, 701, 705
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 5 cut(s) 87, 174, 271, 640, 673
SchI GAGTC 3 cut(s) 200, 259, 394
ScrFI CCNGG 3 cut(s) 56, 160, 493
SduI GDGCHC 5 cut(s) 159, 304, 348, 452, 596
SetI ASST 2 cut(s) 41, 423
SfaNI GCATC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 5 cut(s) 6, 339, 610, 702, 716
SsiI CCGC 6 cut(s) 79, 183, 186, 258, 352, 372
SspMI CTAG 2 cut(s) 468, 644
StyD4I CCNGG 3 cut(s) 54, 158, 491
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 601
TaqI TCGA 3 cut(s) 66, 361, 759
TasI AATT 5 cut(s) 6, 339, 610, 702, 716
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 501, 701, 705
Tru9I TTAA 3 cut(s) 501, 701, 705
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 3 cut(s) 98, 377, 386
Tsp45I GTSAC 3 cut(s) 98, 377, 386
TspDTI ATGAA 4 cut(s) 225, 519, 593, 729
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 55
VspI ATTAAT 1 cut(s) 705
XbaI TCTAGA 1 cut(s) 643
XspI CTAG 2 cut(s) 468, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.