RLG00000013991
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000418
Physical Location & Seq
Reverse (-)
45269161 .. 45270120
960 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013991

Sequence Viewer

Length: 846 bp
ATGGGTTGTCCGATCGGGTACAGGTTTCATCCCACTGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATCCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCGCAACGGCAAGCGTTTTGATCGCAAAGTAGGCTCCGGAACGTGGAGCGGCCAGTTTTCCAGACAGGTTGTTGCCGCCGATAGAGAGACCGGATGCCGTATTAATGGGATTAGGAGGGATTTTAGGTACGAGGGCGGATGTATTCCTCACCAAAACAACTCTTGGTTGATGCAAGAGTTCGAATTGTGTCCCACTGATGCCTTGGTGCTGTGCACCTTGAAGAAGAACCCAAGAAAAGCTGCTCAGACCAATGGCAAGAAGAGGAAGATGATCAATTCCGAGAGTCGAGATCCTCAGTTGTTGCAAGTTGTTAATGAAGAGCTCTATCCTGAGTTATATCTTGATAATGGGACTCTGTTTTCTATAGAGGAACTTTTTCCACCAAGTCCTCTAAATGTTCCGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCAAAGACAACAACTTCAGCTTTGTATCCAGTGATCATGATCAATTCTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

282

Amino Acids

32.53

Weight (kDa)

4.95

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 138 1.1e-21 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AccIII TCCGGA 3 cut(s) 118, 263, 628
AciI CCGC 5 cut(s) 229, 276, 303, 363, 750
AclWI GGATC 5 cut(s) 512, 626, 639, 681, 717
AcoI YGGCCR 2 cut(s) 130, 277
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 772
AfaI GTAC 2 cut(s) 20, 356
AfiI CCNNNNNNNGG 2 cut(s) 70, 270
AgsI TTSAA 3 cut(s) 226, 448, 761
AjnI CCWGG 2 cut(s) 74, 143
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 4 cut(s) 467, 550, 732, 792
AluI AGCT 4 cut(s) 467, 550, 732, 792
Alw21I GWGCWC 2 cut(s) 443, 552
Alw26I GTCTC 3 cut(s) 308, 666, 672
Alw44I GTGCAC 1 cut(s) 439
AlwI GGATC 5 cut(s) 512, 626, 639, 681, 717
Aor13HI TCCGGA 3 cut(s) 118, 263, 628
AoxI GGCC 3 cut(s) 72, 130, 277
ApaLI GTGCAC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 755
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 603
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 199, 368
AsuII TTCGAA 1 cut(s) 408
BaeGI GKGCMC 1 cut(s) 443
BamHI GGATCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 729
Bbv12I GWGCWC 2 cut(s) 443, 552
BbvI GCAGC 1 cut(s) 454
BccI CCATC 2 cut(s) 73, 179
BceAI ACGGC 3 cut(s) 145, 250, 309
BciT130I CCWGG 2 cut(s) 76, 145
BciVI GTATCC 2 cut(s) 126, 808
BclI TGATCA 4 cut(s) 498, 697, 805, 811
BcoDI GTCTC 3 cut(s) 308, 666, 672
BfmI CTRYAG 1 cut(s) 591
BfuI GTATCC 2 cut(s) 126, 808
BglII AGATCT 1 cut(s) 105
BisI GCNGC 3 cut(s) 277, 303, 468
BlsI GCNGC 3 cut(s) 278, 304, 469
Bme1390I CCNGG 2 cut(s) 76, 145
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 3 cut(s) 172, 262, 633
BmrFI CCNGG 2 cut(s) 76, 145
BmsI GCATC 3 cut(s) 311, 387, 415
BpiI GAAGAC 1 cut(s) 729
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 810
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 143, 144, 429
BsaWI WCCGGW 4 cut(s) 118, 263, 317, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 270
Bse1I ACTGG 2 cut(s) 280, 801
Bse8I GATNNNNATC 1 cut(s) 810
BseAI TCCGGA 3 cut(s) 118, 263, 628
BseBI CCWGG 2 cut(s) 76, 145
BseDI CCNNGG 3 cut(s) 143, 144, 429
BseGI GGATG 5 cut(s) 28, 84, 187, 326, 371
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 2 cut(s) 70, 270
BseMII CTCAG 5 cut(s) 485, 536, 549, 677, 683
BseNI ACTGG 2 cut(s) 280, 801
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 3 cut(s) 74, 132, 279
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 443, 552
BsiSI CCGG 4 cut(s) 119, 264, 318, 629
BslFI GGGAC 3 cut(s) 170, 402, 592
BslI CCNNNNNNNGG 2 cut(s) 70, 270
BsmAI GTCTC 3 cut(s) 308, 666, 672
BsmFI GGGAC 3 cut(s) 170, 402, 592
BsnI GGCC 3 cut(s) 74, 132, 279
Bso31I GGTCTC 1 cut(s) 308
Bsp119I TTCGAA 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 443, 552
Bsp13I TCCGGA 3 cut(s) 118, 263, 628
BspACI CCGC 5 cut(s) 229, 276, 303, 363, 750
BspANI GGCC 3 cut(s) 74, 132, 279
BspCNI CTCAG 5 cut(s) 484, 535, 550, 676, 682
BspEI TCCGGA 3 cut(s) 118, 263, 628
BspHI TCATGA 2 cut(s) 735, 808
BspLI GGNNCC 3 cut(s) 172, 262, 633
BspPI GGATC 5 cut(s) 512, 626, 639, 681, 717
BspQI GCTCTTC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 276
BsrI ACTGG 2 cut(s) 280, 801
BssECI CCNNGG 3 cut(s) 143, 144, 429
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 76, 145
Bst4CI ACNGT 2 cut(s) 167, 768
Bst6I CTCTTC 3 cut(s) 482, 540, 642
BstBI TTCGAA 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 5 cut(s) 471, 522, 558, 663, 669
BstF5I GGATG 5 cut(s) 28, 84, 187, 326, 371
BstMAI GTCTC 3 cut(s) 308, 666, 672
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 76, 145
BstSCI CCNGG 2 cut(s) 74, 143
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 3 cut(s) 105, 517, 631
BstYI RGATCY 3 cut(s) 105, 517, 631
BsuI GTATCC 2 cut(s) 126, 808
BsuRI GGCC 3 cut(s) 74, 132, 279
BtsCI GGATG 5 cut(s) 28, 84, 187, 326, 371
BtsIMutI CAGTG 3 cut(s) 33, 420, 808
Cac8I GCNNGC 1 cut(s) 239
CciI TCATGA 2 cut(s) 735, 808
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 19, 355
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviAII CATG 3 cut(s) 736, 809, 840
CviJI RGCY 9 cut(s) 74, 132, 193, 261, 279, 467, 550, 732, 792
CviKI_1 RGCY 9 cut(s) 74, 132, 193, 261, 279, 467, 550, 732, 792
CviQI GTAC 2 cut(s) 19, 355
DdeI CTNAG 5 cut(s) 471, 522, 558, 663, 669
EaeI YGGCCR 2 cut(s) 130, 277
Eam1104I CTCTTC 3 cut(s) 482, 540, 642
EarI CTCTTC 3 cut(s) 482, 540, 642
EciI GGCGGA 1 cut(s) 378
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 74, 143
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 3 cut(s) 739, 812, 843
FaiI YATR 9 cut(s) 565, 593, 682, 684, 718, 720, 737, 810, 841
FaqI GGGAC 3 cut(s) 170, 402, 592
FatI CATG 3 cut(s) 735, 808, 839
FauNDI CATATG 2 cut(s) 682, 718
FbaI TGATCA 4 cut(s) 498, 697, 805, 811
Fnu4HI GCNGC 3 cut(s) 277, 303, 468
FokI GGATG 5 cut(s) 15, 91, 194, 333, 378
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 277, 303, 468
GluI GCNGC 3 cut(s) 277, 303, 468
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 3 cut(s) 74, 132, 279
HapII CCGG 4 cut(s) 119, 264, 318, 629
Hin1II CATG 3 cut(s) 739, 812, 843
HinfI GANTC 4 cut(s) 511, 580, 650, 659
HpaII CCGG 4 cut(s) 119, 264, 318, 629
HphI GGTGA 2 cut(s) 199, 368
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 4 cut(s) 12, 112, 474, 508
Hpy8I GTNNAC 1 cut(s) 441
HpyCH4III ACNGT 2 cut(s) 167, 768
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 400, 441, 532, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 5 cut(s) 471, 522, 558, 663, 669
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 3 cut(s) 739, 812, 843
Kpn2I TCCGGA 3 cut(s) 118, 263, 628
Ksp22I TGATCA 4 cut(s) 498, 697, 805, 811
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 266, 273
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 3 cut(s) 311, 387, 415
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 276
MflI RGATCY 3 cut(s) 105, 517, 631
MhlI GDGCHC 2 cut(s) 443, 552
MluCI AATT 5 cut(s) 410, 502, 701, 755, 815
MlyI GAGTC 4 cut(s) 520, 574, 659, 668
MnlI CCTC 9 cut(s) 204, 336, 352, 384, 483, 531, 589, 627, 645
MroI TCCGGA 3 cut(s) 118, 263, 628
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 3 cut(s) 330, 540, 836
MslI CAYNNNNRTG 2 cut(s) 99, 717
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 4 cut(s) 119, 264, 318, 629
MspR9I CCNGG 2 cut(s) 76, 145
MvaI CCWGG 2 cut(s) 76, 145
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeI CATATG 2 cut(s) 682, 718
NlaIII CATG 3 cut(s) 739, 812, 843
NlaIV GGNNCC 3 cut(s) 172, 262, 633
NspV TTCGAA 1 cut(s) 408
PagI TCATGA 2 cut(s) 735, 808
PasI CCCWGGG 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 603
PkrI GCNGC 3 cut(s) 278, 304, 469
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 4 cut(s) 519, 574, 658, 667
PpsI GAGTC 4 cut(s) 519, 574, 658, 667
PshBI ATTAAT 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 74, 143
PspGI CCWGG 2 cut(s) 74, 143
PspN4I GGNNCC 3 cut(s) 172, 262, 633
PspPI GGNCC 1 cut(s) 72
PsuI RGATCY 3 cut(s) 105, 517, 631
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 2 cut(s) 20, 356
RsaNI GTAC 2 cut(s) 19, 355
RseI CAYNNNNRTG 2 cut(s) 99, 717
SacI GAGCTC 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 3 cut(s) 330, 540, 836
SatI GCNGC 3 cut(s) 277, 303, 468
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 4 cut(s) 520, 574, 659, 668
ScrFI CCNGG 2 cut(s) 76, 145
SduI GDGCHC 2 cut(s) 443, 552
SetI ASST 9 cut(s) 26, 272, 297, 356, 446, 469, 552, 734, 794
SfaNI GCATC 3 cut(s) 311, 387, 415
SfcI CTRYAG 1 cut(s) 591
SfuI TTCGAA 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 99, 717
Sse9I AATT 5 cut(s) 410, 502, 701, 755, 815
SsiI CCGC 5 cut(s) 229, 276, 303, 363, 750
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 2 cut(s) 74, 143
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 167, 768
TaiI ACGT 1 cut(s) 272
TaqI TCGA 4 cut(s) 98, 408, 514, 653
TasI AATT 5 cut(s) 410, 502, 701, 755, 815
TauI GCSGC 2 cut(s) 279, 305
Tru1I TTAA 3 cut(s) 330, 540, 836
Tru9I TTAA 3 cut(s) 330, 540, 836
TscAI CASTG 3 cut(s) 40, 427, 808
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 6 cut(s) 17, 54, 558, 705, 724, 735
TspRI CASTG 3 cut(s) 40, 427, 808
VneI GTGCAC 1 cut(s) 439
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.