Rorug05G0232700
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000418
Physical Location & Seq
Forward (+)
24272219 .. 24272677
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0232700.1

Sequence Viewer

Length: 459 bp
ATGGCAAACTTCCTGAAGCTCACCACCATTCTCTCCCTTATGGTTTTGGCTTTGCTCCTAGCTTCGCAATACCCAATGGCCTTCTCGTCCGAGCTCGAGGACGAAGACGAGGAGGAGTACGTGCTCGATGCTCCGAATCCGAACTTCAGATCCAGAAGCAGGTTCTTGGCCAGCATTATCAAGAAAGGAGCGCATTGCGACCCCATCAAGTACAACATCTGCAATGGGATTTCGGCAAACAATGGAACGAGCATTCTGCACTGCTGTAAGACTCATTGTCGTAACATTCTCGGAGACCGGAATAACTGCGGGAAGTGCGGGCGCAAGTGCAATCAGGGACAGCTTTGCTGCAATGGAAGTTGTACGTATGTTGCTTACAACGCCAATCACTGTGGCAAGTGTGCTAGGAAGTGCTCGGCTGGGGTTAAATGTGAGTCTGGATACTGTGGGTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

152

Amino Acids

16.61

Weight (kDa)

8.46

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 65 - 152 2.1e-20 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AciI CCGC 2 cut(s) 309, 318
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 35, 130
AfaI GTAC 3 cut(s) 119, 212, 364
AfiI CCNNNNNNNGG 1 cut(s) 159
AhdI GACNNNNNGTC 1 cut(s) 276
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 4 cut(s) 19, 62, 94, 343
AluI AGCT 4 cut(s) 19, 62, 94, 343
Alw21I GWGCWC 3 cut(s) 96, 126, 416
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 2 cut(s) 78, 168
ApeKI GCWGC 1 cut(s) 348
AspLEI GCGC 2 cut(s) 193, 324
AsuHPI GGTGA 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 95
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 3 cut(s) 96, 126, 416
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciVI GTATCC 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 59, 405
BfuAI ACCTGC 1 cut(s) 150
BfuI GTATCC 1 cut(s) 434
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
BmeRI GACNNNNNGTC 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 95
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 111
BsaAI YACGTR 2 cut(s) 121, 366
BsaI GGTCTC 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse3DI GCAATG 3 cut(s) 193, 229, 358
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 3 cut(s) 193, 229, 358
BseRI GAGGAG 2 cut(s) 125, 128
BseXI GCAGC 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 2 cut(s) 80, 170
BsiHKAI GWGCWC 3 cut(s) 96, 126, 416
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 2 cut(s) 80, 170
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 3 cut(s) 96, 126, 416
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 2 cut(s) 309, 318
BspANI GGCC 2 cut(s) 80, 170
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 3 cut(s) 193, 229, 358
BssMI GATC 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 392, 446
BstBAI YACGTR 2 cut(s) 121, 366
BstC8I GCNNGC 2 cut(s) 172, 320
BstHHI GCGC 2 cut(s) 193, 324
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 315, 380
BstSNI TACGTA 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 2 cut(s) 80, 170
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 259, 388
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 172, 320
CfoI GCGC 2 cut(s) 193, 324
Csp6I GTAC 3 cut(s) 118, 211, 363
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviJI RGCY 8 cut(s) 19, 50, 62, 80, 94, 170, 343, 419
CviKI_1 RGCY 8 cut(s) 19, 50, 62, 80, 94, 170, 343, 419
CviQI GTAC 3 cut(s) 118, 211, 363
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
DriI GACNNNNNGTC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 168
Eam1105I GACNNNNNGTC 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 94
Eco105I TACGTA 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 2 cut(s) 35, 130
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 96
FaiI YATR 3 cut(s) 41, 369, 453
FaqI GGGAC 1 cut(s) 351
FauI CCCGC 2 cut(s) 302, 311
Fnu4HI GCNGC 1 cut(s) 349
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 2 cut(s) 59, 405
GlaI GCGC 2 cut(s) 192, 323
GluI GCNGC 1 cut(s) 349
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 2 cut(s) 80, 170
HapII CCGG 1 cut(s) 298
HhaI GCGC 2 cut(s) 193, 324
Hin6I GCGC 2 cut(s) 191, 322
HinP1I GCGC 2 cut(s) 191, 322
HinfI GANTC 3 cut(s) 136, 271, 434
HpaII CCGG 1 cut(s) 298
HphI GGTGA 1 cut(s) 13
Hpy188I TCNGA 5 cut(s) 91, 135, 141, 149, 293
Hpy188III TCNNGA 4 cut(s) 13, 153, 181, 438
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 392, 446
HpyCH4IV ACGT 2 cut(s) 120, 365
HpyCH4V TGCA 4 cut(s) 222, 259, 330, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 380
HpySE526I ACGT 2 cut(s) 120, 365
HspAI GCGC 2 cut(s) 191, 322
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 3 cut(s) 60, 136, 188
LpnPI CCDG 8 cut(s) 26, 145, 166, 184, 311, 320, 405, 423
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 59, 405
MaeII ACGT 2 cut(s) 120, 365
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 3 cut(s) 96, 126, 416
MlsI TGGCCA 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 2 cut(s) 265, 443
MnlI CCTC 3 cut(s) 91, 103, 106
Mox20I TGGCCA 1 cut(s) 170
MscI TGGCCA 1 cut(s) 170
MseI TTAA 2 cut(s) 426, 457
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 315, 380
NdeII GATC 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 95
PctI GAATGC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 2 cut(s) 265, 442
PpsI GAGTC 2 cut(s) 265, 442
Ppu21I YACGTR 2 cut(s) 121, 366
Psp124BI GAGCTC 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 419
PspXI VCTCGAGB 1 cut(s) 95
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 3 cut(s) 119, 212, 364
RsaNI GTAC 3 cut(s) 118, 211, 363
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 426, 457
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 1 cut(s) 149
SchI GAGTC 2 cut(s) 265, 443
SduI GDGCHC 3 cut(s) 96, 126, 416
SetI ASST 7 cut(s) 21, 64, 96, 123, 164, 345, 368
SfaNI GCATC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SnaBI TACGTA 1 cut(s) 366
SsiI CCGC 2 cut(s) 309, 318
SspMI CTAG 2 cut(s) 59, 405
SstI GAGCTC 1 cut(s) 96
TaaI ACNGT 2 cut(s) 392, 446
TaiI ACGT 2 cut(s) 123, 368
TaqI TCGA 2 cut(s) 96, 126
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 2 cut(s) 426, 457
Tru9I TTAA 2 cut(s) 426, 457
TscAI CASTG 2 cut(s) 266, 395
TseI GCWGC 1 cut(s) 348
TspRI CASTG 2 cut(s) 266, 395
XhoI CTCGAG 1 cut(s) 95
XspI CTAG 2 cut(s) 59, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.