Rmu_sc0000115.1_g000020
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000115.1
OG0000418
Physical Location & Seq
Forward (+)
98116 .. 98553
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000115.1_g000020.1.cds

Sequence Viewer

Length: 438 bp
atggcatcgggtgcttacccagttggttacagatttcgtcctacaaacctggaattggtgacttactatcttcacaacagggttgttctaggtgatcagtttcgctcaagttcaatctttgattgtcctgatttctatggccaaaatgagccctacctcatttgggacatgttccatgcccaatccaacactacgaaggaggaggaagaacctctatatttcttcactcaccgcaagaaattgaatcccaaagcgaaaatttttgataggaaggtgggatcgggaacatggagtgcccagaattccaaaaatgatgttgttgttgatgatagtgttattggaattaagagagaatttcgttatgagggtggatctgattcacatcaaaatggggcgggcttggttgatgcaagagtaccagatcaaatctcacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

145

Amino Acids

16.61

Weight (kDa)

6.06

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 232, 395
AclWI GGATC 2 cut(s) 286, 379
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 3 cut(s) 258, 301, 353
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 55, 163
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 114, 244
AjnI CCWGG 1 cut(s) 48
AlwI GGATC 2 cut(s) 286, 379
AoxI GGCC 1 cut(s) 139
ApoI RAATTY 3 cut(s) 258, 301, 353
AsuHPI GGTGA 3 cut(s) 70, 104, 221
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 141
BanII GRGCYC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 94
BfaI CTAG 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 14, 397
BmuI ACTGGG 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 381
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 163
Bse1I ACTGG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 55, 163
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 298
BshFI GGCC 1 cut(s) 141
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 55, 163
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 153, 298
Bsp143I GATC 4 cut(s) 94, 278, 371, 421
BspACI CCGC 2 cut(s) 232, 395
BspANI GGCC 1 cut(s) 141
BspPI GGATC 2 cut(s) 286, 379
BsrI ACTGG 1 cut(s) 20
BssMI GATC 4 cut(s) 94, 278, 371, 421
Bst2UI CCWGG 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 397
BstKTI GATC 4 cut(s) 97, 281, 374, 424
BstMBI GATC 4 cut(s) 94, 278, 371, 421
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 416
CviAII CATG 3 cut(s) 169, 176, 288
CviJI RGCY 3 cut(s) 141, 151, 399
CviKI_1 RGCY 3 cut(s) 141, 151, 399
CviQI GTAC 1 cut(s) 416
DpnI GATC 4 cut(s) 96, 280, 373, 423
DpnII GATC 4 cut(s) 94, 278, 371, 421
EaeI YGGCCR 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 3 cut(s) 172, 179, 291
FaiI YATR 6 cut(s) 138, 170, 177, 217, 289, 363
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 168, 175, 287
FauI CCCGC 1 cut(s) 388
FbaI TGATCA 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 153
FspBI CTAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 141
Hin1II CATG 3 cut(s) 172, 179, 291
HinfI GANTC 2 cut(s) 244, 377
HphI GGTGA 3 cut(s) 70, 104, 221
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 2 cut(s) 128, 282
HpyAV CCTTC 2 cut(s) 190, 265
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 172, 179, 291
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 278, 371, 421
LpnPI CCDG 7 cut(s) 33, 35, 62, 64, 141, 311, 432
LweI GCATC 2 cut(s) 14, 397
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 26, 58
MalI GATC 4 cut(s) 96, 280, 373, 423
MboI GATC 4 cut(s) 94, 278, 371, 421
MboII GAAGA 3 cut(s) 62, 214, 218
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 2 cut(s) 153, 298
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 6 cut(s) 53, 239, 258, 301, 342, 353
MluNI TGGCCA 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 167, 193, 196, 222, 358
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 94, 278, 371, 421
NlaIII CATG 3 cut(s) 172, 179, 291
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 172
PciI ACATGT 1 cut(s) 168
PfeI GAWTC 2 cut(s) 244, 377
PscI ACATGT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 1 cut(s) 345
Sau3AI GATC 4 cut(s) 94, 278, 371, 421
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 2 cut(s) 153, 298
SetI ASST 5 cut(s) 51, 94, 159, 214, 276
SfaNI GCATC 2 cut(s) 14, 397
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 6 cut(s) 53, 239, 258, 301, 342, 353
SsiI CCGC 2 cut(s) 232, 395
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 48
TasI AATT 6 cut(s) 53, 239, 258, 301, 342, 353
TfiI GAWTC 2 cut(s) 244, 377
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
XapI RAATTY 3 cut(s) 258, 301, 353
XceI RCATGY 1 cut(s) 172
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.