RLG00000029394
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000418
Physical Location & Seq
Forward (+)
37985515 .. 37986022
508 bp
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UTR
Exon/CDS
Intron
RLM00000029394

Sequence Viewer

Length: 351 bp
ATGGCATCGGGTGCTTACCCAATTGGTTACAGATTTCATCCTACAGACCTGGAATTGGTGGCTTACTACCTCCACAACCGGGTTGCCATGGTTGATCAGTTTCGCTCGAGTCCAATCCTTGATTGCCCTAATTTCTATGGCAAAAATGAGCACTGGCTCATTGGGGACATGTTCCATGCCCAATCCAACAATATGAAAGAGGAAGAAACTTTGTATTTCTTGACTCACCGCAAGAAATTGAATCCCAAAGATTACCAGATCACATCTCACAGTATTGATCTCGTACTCTGCACCCTCAAGAAAAACCCCAGAAAACTTCCACCCCCAACTTGTCCTGCTCCTCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

117

Amino Acids

13.46

Weight (kDa)

8.44

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 84 1.2e-09 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 229
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 55, 79
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 1 cut(s) 48
Alw21I GWGCWC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 50, 80
BmeT110I CYCGRG 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 50, 80
BmsI GCATC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 79
Bse1I ACTGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 55, 79
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 55, 79
BsmFI GGGAC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 94, 258, 277
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 94, 258, 277
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 97, 261, 280
BstMBI GATC 3 cut(s) 94, 258, 277
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 48, 78
BstSFI CTRYAG 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 151
Csp6I GTAC 1 cut(s) 284
CviAII CATG 3 cut(s) 88, 169, 176
CviJI RGCY 2 cut(s) 62, 157
CviKI_1 RGCY 2 cut(s) 62, 157
CviQI GTAC 1 cut(s) 284
DpnI GATC 3 cut(s) 96, 260, 279
DpnII GATC 3 cut(s) 94, 258, 277
Eco130I CCWWGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 91, 172, 179
FaiI YATR 5 cut(s) 89, 138, 170, 177, 194
FaqI GGGAC 1 cut(s) 179
FatI CATG 3 cut(s) 87, 168, 175
FbaI TGATCA 1 cut(s) 94
FokI GGATG 1 cut(s) 24
HapII CCGG 1 cut(s) 79
Hin1II CATG 3 cut(s) 91, 172, 179
HinfI GANTC 3 cut(s) 109, 223, 241
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 220, 298
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 3 cut(s) 91, 172, 179
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 94, 258, 277
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 6 cut(s) 35, 62, 92, 139, 269, 322
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 26
MalI GATC 3 cut(s) 96, 260, 279
MboI GATC 3 cut(s) 94, 258, 277
MboII GAAGA 1 cut(s) 215
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 5 cut(s) 21, 53, 130, 236, 346
MlyI GAGTC 2 cut(s) 118, 217
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 80, 193, 305, 351
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 50, 80
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 87
NdeII GATC 3 cut(s) 94, 258, 277
NlaIII CATG 3 cut(s) 91, 172, 179
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 106
PciI ACATGT 1 cut(s) 168
PfeI GAWTC 1 cut(s) 241
PleI GAGTC 2 cut(s) 117, 217
PpsI GAGTC 2 cut(s) 117, 217
PscI ACATGT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 106
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 94, 258, 277
SchI GAGTC 2 cut(s) 118, 217
ScrFI CCNGG 2 cut(s) 50, 80
SduI GDGCHC 1 cut(s) 153
SetI ASST 2 cut(s) 51, 72
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 2 cut(s) 106, 296
SmoI CTYRAG 2 cut(s) 106, 296
Sse9I AATT 5 cut(s) 21, 53, 130, 236, 346
SsiI CCGC 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 48, 78
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 107
TasI AATT 5 cut(s) 21, 53, 130, 236, 346
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 26, 209
TspRI CASTG 1 cut(s) 158
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.